Wall clock time and date at job start Sat Apr 11 2020 05:51:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53001 * 109.47355 * 2 1 4 4 C 1.52996 * 109.47103 * 180.02562 * 3 2 1 5 5 H 1.09003 * 109.47585 * 54.99698 * 4 3 2 6 6 C 1.53002 * 109.47113 * 294.99618 * 4 3 2 7 7 C 1.50703 * 109.47222 * 174.99549 * 4 3 2 8 8 O 1.21283 * 119.99362 * 31.42826 * 7 4 3 9 9 N 1.34779 * 120.00210 * 211.42244 * 7 4 3 10 10 C 1.47017 * 125.64664 * 184.85531 * 9 7 4 11 11 C 1.54319 * 107.27446 * 180.97173 * 10 9 7 12 12 C 1.55157 * 102.86191 * 22.52867 * 11 10 9 13 13 H 1.08996 * 111.03574 * 82.39549 * 12 11 10 14 14 C 1.53001 * 111.00362 * 206.22992 * 12 11 10 15 15 C 1.52998 * 109.46992 * 287.19811 * 14 12 11 16 16 N 1.46899 * 109.46854 * 180.02562 * 15 14 12 17 17 C 1.46908 * 110.99896 * 179.97438 * 16 15 14 18 18 C 1.50693 * 109.47242 * 179.97438 * 17 16 15 19 19 O 1.21297 * 120.00324 * 0.02562 * 18 17 16 20 20 N 1.34774 * 120.00074 * 179.97438 * 18 17 16 21 21 C 1.37105 * 120.00017 * 180.02562 * 20 18 17 22 22 H 1.08001 * 119.99891 * 359.97438 * 21 20 18 23 23 C 1.38952 * 119.99811 * 180.02562 * 21 20 18 24 24 N 1.31404 * 120.00136 * 359.97438 * 23 21 20 25 25 Si 1.86796 * 119.99725 * 180.02562 * 23 21 20 26 26 H 1.48500 * 109.47456 * 59.99802 * 25 23 21 27 27 H 1.48508 * 109.47118 * 179.97438 * 25 23 21 28 28 H 1.48501 * 109.47127 * 299.99750 * 25 23 21 29 29 C 1.47423 * 125.64506 * 5.17177 * 9 7 4 30 30 H 1.09002 * 109.46833 * 60.00236 * 1 2 3 31 31 H 1.08997 * 109.47130 * 180.02562 * 1 2 3 32 32 H 1.09003 * 109.47372 * 300.00806 * 1 2 3 33 33 H 1.09002 * 109.46833 * 119.99764 * 2 1 3 34 34 H 1.08995 * 109.46921 * 239.99652 * 2 1 3 35 35 H 1.09002 * 109.46957 * 299.99688 * 3 2 1 36 36 H 1.08995 * 109.47389 * 59.99939 * 3 2 1 37 37 H 1.09005 * 109.46895 * 305.34361 * 6 4 3 38 38 H 1.09000 * 109.46989 * 65.33760 * 6 4 3 39 39 H 1.08998 * 109.47251 * 185.34483 * 6 4 3 40 40 H 1.08998 * 109.88563 * 300.52005 * 10 9 7 41 41 H 1.09005 * 109.88313 * 61.68660 * 10 9 7 42 42 H 1.09009 * 110.92353 * 264.11634 * 11 10 9 43 43 H 1.08994 * 110.58954 * 140.79202 * 11 10 9 44 44 H 1.09008 * 109.46989 * 47.19682 * 14 12 11 45 45 H 1.08998 * 109.47182 * 167.19478 * 14 12 11 46 46 H 1.09000 * 109.46909 * 299.99498 * 15 14 12 47 47 H 1.08998 * 109.47429 * 59.99818 * 15 14 12 48 48 H 1.00897 * 111.00111 * 303.94752 * 16 15 14 49 49 H 1.09000 * 109.47052 * 299.99991 * 17 16 15 50 50 H 1.09003 * 109.46609 * 59.99700 * 17 16 15 51 51 H 0.97001 * 120.00072 * 0.02562 * 20 18 17 52 52 H 0.97004 * 120.00140 * 179.97438 * 24 23 21 53 53 H 1.09004 * 110.36517 * 274.66525 * 29 9 7 54 54 H 1.08994 * 110.37219 * 36.99380 * 29 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 3.5700 1.4424 -0.0006 5 1 3.9331 0.8530 -0.8427 6 6 4.0806 0.8327 1.3065 7 6 4.0724 2.8578 -0.1246 8 8 3.4297 3.7727 0.3455 9 7 5.2359 3.1070 -0.7577 10 6 5.8901 4.4194 -0.8629 11 6 7.1764 4.2249 -1.6929 12 6 6.8785 2.9296 -2.4934 13 1 6.2851 3.1463 -3.3816 14 6 8.1736 2.2051 -2.8659 15 6 8.8920 2.9810 -3.9716 16 7 10.1351 2.2850 -4.3297 17 6 10.8532 3.0028 -5.3916 18 6 12.1203 2.2611 -5.7310 19 8 12.3978 1.2352 -5.1464 20 7 12.9447 2.7371 -6.6850 21 6 14.0973 2.0620 -6.9943 22 1 14.3447 1.1490 -6.4731 23 6 14.9476 2.5530 -7.9775 24 7 14.6468 3.6642 -8.6112 25 14 16.5175 1.6329 -8.3993 26 1 16.1789 0.2651 -8.8682 27 1 17.2432 2.3582 -9.4729 28 1 17.3783 1.5435 -7.1925 29 6 6.0598 2.1099 -1.4650 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3633 -1.0276 0.0005 32 1 -0.3634 0.5140 0.8899 33 1 1.8933 -0.5138 0.8900 34 1 1.8933 -0.5139 -0.8899 35 1 1.6768 1.9563 -0.8900 36 1 1.6768 1.9564 0.8899 37 1 3.6415 1.3639 2.1510 38 1 3.7974 -0.2189 1.3518 39 1 5.1664 0.9187 1.3478 40 1 5.2270 5.1252 -1.3631 41 1 6.1448 4.7874 0.1311 42 1 8.0414 4.0869 -1.0439 43 1 7.3291 5.0681 -2.3665 44 1 8.8186 2.1401 -1.9896 45 1 7.9393 1.2011 -3.2199 46 1 8.2471 3.0459 -4.8479 47 1 9.1263 3.9850 -3.6176 48 1 10.7227 2.1546 -3.5200 49 1 10.2214 3.0679 -6.2774 50 1 11.1013 4.0069 -5.0476 51 1 12.7227 3.5573 -7.1529 52 1 15.2405 4.0072 -9.2973 53 1 6.7262 1.6040 -0.7662 54 1 5.4245 1.3865 -1.9760 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001717077466.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:51:42 Heat of formation + Delta-G solvation = -123.642345 kcal Electronic energy + Delta-G solvation = -28696.335630 eV Core-core repulsion = 24665.730499 eV Total energy + Delta-G solvation = -4030.605131 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 339.231 amu Computer time = 1.23 seconds Orbital eigenvalues (eV) -41.35247 -40.13769 -39.13874 -37.06291 -36.82471 -35.86604 -33.96866 -33.24431 -32.89515 -30.92867 -29.55813 -27.61046 -27.54763 -25.85620 -25.27323 -23.35467 -23.07313 -21.73813 -21.29583 -20.85541 -19.91182 -19.84843 -18.29558 -17.81119 -17.24358 -17.01131 -16.67319 -16.44875 -16.26218 -15.96084 -15.52905 -15.32495 -15.22371 -14.89623 -14.85726 -14.41220 -14.23042 -14.16066 -13.81383 -13.78788 -13.53279 -13.42211 -13.25623 -13.14448 -12.99059 -12.95130 -12.80073 -12.70008 -12.42138 -12.17859 -12.15519 -12.11039 -11.93130 -11.86649 -11.69366 -11.60490 -11.49078 -11.44655 -11.38103 -10.73967 -10.32440 -10.00335 -9.71490 -9.26310 -8.45376 -5.94231 1.41116 1.43139 1.53913 1.54790 1.94517 2.07116 2.30555 2.94661 3.22147 3.36760 3.48872 3.63313 3.72899 3.81684 3.89941 3.96521 4.19601 4.28052 4.29994 4.33483 4.34827 4.38048 4.42567 4.44899 4.53438 4.57589 4.60193 4.68680 4.73466 4.77760 4.80344 4.84140 4.87034 4.89205 4.93430 4.98192 5.00860 5.10512 5.15384 5.18996 5.26150 5.33312 5.36135 5.40432 5.41905 5.45594 5.48572 5.92643 6.15153 6.46346 6.47957 6.61630 7.09067 7.13850 7.57912 8.13167 8.71711 Molecular weight = 339.23amu Principal moments of inertia in cm(-1) A = 0.025886 B = 0.001412 C = 0.001375 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1081.389545 B =19828.810371 C =20358.047541 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C -0.120 4.120 3 C -0.100 4.100 4 C -0.102 4.102 5 H 0.112 0.888 6 C -0.137 4.137 7 C 0.524 3.476 8 O -0.590 6.590 9 N -0.619 5.619 10 C 0.102 3.898 11 C -0.121 4.121 12 C -0.089 4.089 13 H 0.091 0.909 14 C -0.096 4.096 15 C 0.061 3.939 16 N -0.686 5.686 17 C 0.065 3.935 18 C 0.436 3.564 19 O -0.624 6.624 20 N -0.573 5.573 21 C -0.336 4.336 22 H 0.079 0.921 23 C -0.012 4.012 24 N -0.920 5.920 25 Si 0.992 3.008 26 H -0.272 1.272 27 H -0.271 1.271 28 H -0.271 1.271 29 C 0.101 3.899 30 H 0.050 0.950 31 H 0.064 0.936 32 H 0.050 0.950 33 H 0.075 0.925 34 H 0.072 0.928 35 H 0.052 0.948 36 H 0.055 0.945 37 H 0.049 0.951 38 H 0.092 0.908 39 H 0.061 0.939 40 H 0.057 0.943 41 H 0.058 0.942 42 H 0.084 0.916 43 H 0.092 0.908 44 H 0.069 0.931 45 H 0.075 0.925 46 H 0.075 0.925 47 H 0.040 0.960 48 H 0.344 0.656 49 H 0.102 0.898 50 H 0.065 0.935 51 H 0.396 0.604 52 H 0.277 0.723 53 H 0.084 0.916 54 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.084 -2.070 15.855 28.909 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.157 4.157 3 C -0.138 4.138 4 C -0.123 4.123 5 H 0.130 0.870 6 C -0.194 4.194 7 C 0.314 3.686 8 O -0.471 6.471 9 N -0.352 5.352 10 C -0.021 4.021 11 C -0.159 4.159 12 C -0.109 4.109 13 H 0.109 0.891 14 C -0.134 4.134 15 C -0.068 4.068 16 N -0.318 5.318 17 C -0.067 4.067 18 C 0.224 3.776 19 O -0.510 6.510 20 N -0.211 5.211 21 C -0.466 4.466 22 H 0.097 0.903 23 C -0.211 4.211 24 N -0.561 5.561 25 Si 0.816 3.184 26 H -0.197 1.197 27 H -0.195 1.195 28 H -0.197 1.197 29 C -0.021 4.021 30 H 0.069 0.931 31 H 0.083 0.917 32 H 0.069 0.931 33 H 0.093 0.907 34 H 0.091 0.909 35 H 0.070 0.930 36 H 0.074 0.926 37 H 0.068 0.932 38 H 0.111 0.889 39 H 0.080 0.920 40 H 0.076 0.924 41 H 0.077 0.923 42 H 0.103 0.897 43 H 0.110 0.890 44 H 0.088 0.912 45 H 0.094 0.906 46 H 0.093 0.907 47 H 0.058 0.942 48 H 0.162 0.838 49 H 0.120 0.880 50 H 0.083 0.917 51 H 0.230 0.770 52 H 0.087 0.913 53 H 0.102 0.898 54 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges -24.516 -2.593 15.938 29.356 hybrid contribution 1.093 1.240 -0.111 1.657 sum -23.423 -1.353 15.827 28.301 Atomic orbital electron populations 1.21783 0.95738 1.02109 1.01595 1.21560 0.96031 0.94998 1.03137 1.21445 0.92317 0.98139 1.01890 1.21386 0.97520 0.91178 1.02255 0.87021 1.21740 1.01224 1.02149 0.94308 1.21059 0.78952 0.92233 0.76326 1.90667 1.57475 1.48495 1.50465 1.48690 1.21961 1.11023 1.53542 1.21987 0.94411 0.85385 1.00294 1.22755 0.95841 0.98854 0.98473 1.22264 0.96121 0.94663 0.97808 0.89090 1.21367 0.94643 0.99487 0.97917 1.22054 0.90424 0.95454 0.98866 1.60075 1.07857 1.50929 1.12942 1.21519 0.92451 0.95075 0.97656 1.20946 0.86973 0.87225 0.82482 1.90486 1.77064 1.27760 1.55703 1.41940 1.20020 1.24915 1.34194 1.19651 0.99074 1.08116 1.19744 0.90281 1.26022 1.02356 0.97101 0.95658 1.69662 1.39692 1.21354 1.25399 0.85000 0.77241 0.78074 0.78094 1.19740 1.19536 1.19656 1.22603 0.93796 0.91329 0.94373 0.93116 0.91722 0.93124 0.90673 0.90907 0.92955 0.92637 0.93201 0.88935 0.92014 0.92411 0.92308 0.89749 0.88987 0.91222 0.90641 0.90659 0.94199 0.83759 0.87959 0.91688 0.76985 0.91310 0.89779 0.88723 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.50 9.91 71.98 0.71 -0.78 16 2 C -0.12 -1.12 5.69 30.60 0.17 -0.94 16 3 C -0.10 -1.40 4.21 30.59 0.13 -1.27 16 4 C -0.10 -1.35 2.38 -11.54 -0.03 -1.37 16 5 H 0.11 0.99 6.46 -2.39 -0.02 0.98 16 6 C -0.14 -1.47 8.80 71.98 0.63 -0.84 16 7 C 0.52 10.66 6.88 87.66 0.60 11.27 16 8 O -0.59 -17.26 16.64 -3.04 -0.05 -17.31 16 9 N -0.62 -10.24 3.33 -811.80 -2.70 -12.94 16 10 C 0.10 1.65 6.87 86.73 0.60 2.24 16 11 C -0.12 -1.41 5.91 31.78 0.19 -1.23 16 12 C -0.09 -1.00 3.00 -9.40 -0.03 -1.03 16 13 H 0.09 1.03 8.14 -2.39 -0.02 1.01 16 14 C -0.10 -1.35 4.98 30.59 0.15 -1.20 16 15 C 0.06 1.14 5.59 86.30 0.48 1.62 16 16 N -0.69 -19.69 6.13 -517.93 -3.17 -22.86 16 17 C 0.07 2.13 6.17 85.55 0.53 2.66 16 18 C 0.44 20.35 7.82 87.66 0.69 21.03 16 19 O -0.62 -34.00 15.78 -3.08 -0.05 -34.04 16 20 N -0.57 -29.06 5.29 -306.98 -1.62 -30.68 16 21 C -0.34 -18.95 9.68 84.04 0.81 -18.14 16 22 H 0.08 4.74 7.16 -2.91 -0.02 4.72 16 23 C -0.01 -0.61 5.50 84.93 0.47 -0.14 16 24 N -0.92 -49.19 13.05 21.66 0.28 -48.91 16 25 Si 0.99 42.44 29.55 68.60 2.03 44.46 16 26 H -0.27 -11.52 7.11 99.48 0.71 -10.82 16 27 H -0.27 -10.91 7.11 99.48 0.71 -10.20 16 28 H -0.27 -11.44 7.11 99.48 0.71 -10.73 16 29 C 0.10 1.09 6.05 86.86 0.53 1.62 16 30 H 0.05 0.52 8.14 -2.39 -0.02 0.50 16 31 H 0.06 0.50 8.14 -2.39 -0.02 0.48 16 32 H 0.05 0.52 8.14 -2.39 -0.02 0.51 16 33 H 0.07 0.57 6.69 -2.39 -0.02 0.56 16 34 H 0.07 0.56 8.14 -2.39 -0.02 0.54 16 35 H 0.05 0.84 8.14 -2.39 -0.02 0.83 16 36 H 0.05 0.98 8.02 -2.39 -0.02 0.96 16 37 H 0.05 0.68 8.14 -2.38 -0.02 0.66 16 38 H 0.09 0.61 6.83 -2.39 -0.02 0.60 16 39 H 0.06 0.64 8.14 -2.39 -0.02 0.62 16 40 H 0.06 1.04 8.14 -2.39 -0.02 1.02 16 41 H 0.06 1.03 8.14 -2.38 -0.02 1.01 16 42 H 0.08 0.94 7.92 -2.38 -0.02 0.92 16 43 H 0.09 0.96 8.14 -2.39 -0.02 0.94 16 44 H 0.07 0.97 7.97 -2.38 -0.02 0.96 16 45 H 0.07 1.16 8.14 -2.39 -0.02 1.14 16 46 H 0.07 1.36 8.14 -2.39 -0.02 1.34 16 47 H 0.04 0.67 7.75 -2.39 -0.02 0.65 16 48 H 0.34 10.38 8.43 -89.70 -0.76 9.62 16 49 H 0.10 3.02 8.14 -2.39 -0.02 3.00 16 50 H 0.07 1.85 8.14 -2.39 -0.02 1.83 16 51 H 0.40 19.03 7.90 -92.71 -0.73 18.30 16 52 H 0.28 13.92 8.31 -92.71 -0.77 13.15 16 53 H 0.08 0.79 8.04 -2.38 -0.02 0.77 16 54 H 0.09 0.76 6.87 -2.39 -0.02 0.74 16 Total: -1.00 -72.96 430.97 0.74 -72.22 By element: Atomic # 1 Polarization: 37.19 SS G_CDS: -0.61 Total: 36.58 kcal Atomic # 6 Polarization: 6.86 SS G_CDS: 6.63 Total: 13.49 kcal Atomic # 7 Polarization: -108.18 SS G_CDS: -7.21 Total: -115.40 kcal Atomic # 8 Polarization: -51.26 SS G_CDS: -0.10 Total: -51.36 kcal Atomic # 14 Polarization: 42.44 SS G_CDS: 2.03 Total: 44.46 kcal Total: -72.96 0.74 -72.22 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001717077466.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -51.423 kcal (2) G-P(sol) polarization free energy of solvation -72.959 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -124.382 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.739 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.219 kcal (6) G-S(sol) free energy of system = (1) + (5) -123.642 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.23 seconds