Wall clock time and date at job start Sat Apr 11 2020 05:52:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.52999 * 109.47145 * 2 1 4 4 C 1.52998 * 109.47480 * 179.97438 * 3 2 1 5 5 H 1.09001 * 109.46968 * 54.99721 * 4 3 2 6 6 C 1.53003 * 109.46916 * 295.00048 * 4 3 2 7 7 C 1.50696 * 109.47643 * 174.99677 * 4 3 2 8 8 O 1.21280 * 119.99607 * 0.02562 * 7 4 3 9 9 N 1.34776 * 120.00417 * 179.97438 * 7 4 3 10 10 C 1.46498 * 119.99972 * 180.02562 * 9 7 4 11 11 H 1.08998 * 109.67351 * 325.31104 * 10 9 7 12 12 C 1.50459 * 109.57279 * 85.63290 * 10 9 7 13 13 C 1.54302 * 113.02854 * 211.95883 * 12 10 9 14 14 C 1.54069 * 112.29109 * 318.30418 * 13 12 10 15 15 N 1.44268 * 111.98150 * 318.91758 * 14 13 12 16 16 C 1.46898 * 110.99849 * 219.31088 * 15 14 13 17 17 C 1.50702 * 109.46832 * 302.86340 * 16 15 14 18 18 O 1.21294 * 119.99966 * 354.61325 * 17 16 15 19 19 N 1.34782 * 119.99748 * 174.33874 * 17 16 15 20 20 C 1.37101 * 119.99397 * 180.27453 * 19 17 16 21 21 H 1.07998 * 120.00688 * 0.02562 * 20 19 17 22 22 C 1.38952 * 119.99380 * 179.97438 * 20 19 17 23 23 N 1.31404 * 120.00302 * 0.02562 * 22 20 19 24 24 Si 1.86799 * 119.99676 * 180.02562 * 22 20 19 25 25 H 1.48501 * 109.47558 * 90.00140 * 24 22 20 26 26 H 1.48508 * 109.47122 * 210.00004 * 24 22 20 27 27 H 1.48500 * 109.47578 * 329.99846 * 24 22 20 28 28 C 1.47797 * 109.46984 * 96.43333 * 15 14 13 29 29 C 1.45866 * 112.91779 * 276.74301 * 28 15 14 30 30 H 1.09004 * 109.47094 * 60.00416 * 1 2 3 31 31 H 1.08998 * 109.47357 * 179.97438 * 1 2 3 32 32 H 1.09000 * 109.47820 * 300.00253 * 1 2 3 33 33 H 1.08993 * 109.47184 * 239.99813 * 2 1 3 34 34 H 1.09004 * 109.47094 * 119.99584 * 2 1 3 35 35 H 1.09000 * 109.47614 * 59.99905 * 3 2 1 36 36 H 1.09004 * 109.47288 * 299.99934 * 3 2 1 37 37 H 1.09001 * 109.47035 * 299.99632 * 6 4 3 38 38 H 1.08997 * 109.47193 * 59.99666 * 6 4 3 39 39 H 1.09000 * 109.46908 * 179.97438 * 6 4 3 40 40 H 0.97005 * 119.99529 * 0.02562 * 9 7 4 41 41 H 1.08993 * 108.77524 * 332.87404 * 12 10 9 42 42 H 1.09003 * 108.77012 * 91.04842 * 12 10 9 43 43 H 1.08998 * 108.91495 * 79.02999 * 13 12 10 44 44 H 1.08996 * 108.91678 * 197.66722 * 13 12 10 45 45 H 1.08999 * 108.97965 * 198.26744 * 14 13 12 46 46 H 1.08997 * 108.97892 * 79.55708 * 14 13 12 47 47 H 1.08999 * 109.47485 * 182.86065 * 16 15 14 48 48 H 1.09001 * 109.47482 * 62.85946 * 16 15 14 49 49 H 0.97000 * 120.00207 * 0.27514 * 19 17 16 50 50 H 0.97004 * 120.00400 * 180.02562 * 23 22 20 51 51 H 1.09002 * 108.79248 * 37.62708 * 28 15 14 52 52 H 1.09002 * 108.79530 * 155.85154 * 28 15 14 53 53 H 1.08999 * 109.05121 * 181.86435 * 29 28 15 54 54 H 1.08993 * 109.05631 * 300.84723 * 29 28 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5699 1.4426 0.0006 5 1 3.9336 0.8530 -0.8409 6 6 4.0794 0.8331 1.3083 7 6 4.0724 2.8579 -0.1233 8 8 3.2843 3.7762 -0.2037 9 7 5.3974 3.1033 -0.1437 10 6 5.8857 4.4793 -0.2636 11 1 5.2128 5.0533 -0.9006 12 6 5.9509 5.1117 1.1001 13 6 5.6782 6.6302 1.0750 14 6 6.3709 7.3288 -0.1106 15 7 7.7047 6.8248 -0.3300 16 6 8.6264 7.9120 -0.6855 17 6 8.1117 8.6272 -1.9081 18 8 7.1332 8.2077 -2.4891 19 7 8.7355 9.7363 -2.3526 20 6 8.2639 10.3901 -3.4615 21 1 7.3923 10.0168 -3.9787 22 6 8.9067 11.5337 -3.9194 23 7 9.9668 11.9883 -3.2900 24 14 8.2637 12.4250 -5.4299 25 1 7.2716 13.4493 -5.0155 26 1 9.3928 13.0855 -6.1330 27 1 7.6156 11.4489 -6.3423 28 6 7.6732 5.7907 -1.3855 29 6 7.3027 4.4738 -0.8796 30 1 -0.3633 0.5138 -0.8901 31 1 -0.3634 -1.0276 -0.0005 32 1 -0.3635 0.5138 0.8899 33 1 1.8933 -0.5138 -0.8899 34 1 1.8933 -0.5138 0.8901 35 1 1.6767 1.9564 0.8899 36 1 1.6766 1.9564 -0.8900 37 1 3.7157 1.4227 2.1499 38 1 3.7160 -0.1906 1.3979 39 1 5.1694 0.8328 1.3086 40 1 6.0277 2.3688 -0.0790 41 1 5.2130 4.6334 1.7442 42 1 6.9425 4.9403 1.5192 43 1 4.6031 6.7949 1.0032 44 1 6.0414 7.0699 2.0039 45 1 6.4247 8.3987 0.0906 46 1 5.7788 7.1686 -1.0116 47 1 9.6129 7.4983 -0.8949 48 1 8.6961 8.6153 0.1443 49 1 9.5181 10.0718 -1.8879 50 1 10.4153 12.7868 -3.6094 51 1 6.9538 6.0891 -2.1480 52 1 8.6603 5.7261 -1.8434 53 1 7.3314 3.7565 -1.6998 54 1 8.0201 4.1708 -0.1169 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001717193383.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:52:05 Heat of formation + Delta-G solvation = -116.229248 kcal Electronic energy + Delta-G solvation = -30485.872371 eV Core-core repulsion = 26455.588696 eV Total energy + Delta-G solvation = -4030.283675 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 339.231 amu Computer time = 1.23 seconds Orbital eigenvalues (eV) -41.48883 -40.76155 -39.09554 -37.02187 -36.42089 -35.71639 -33.84556 -33.37391 -33.27302 -32.25376 -29.30594 -27.49784 -27.05837 -26.10668 -25.33979 -24.39361 -22.11297 -21.98101 -21.24130 -20.66045 -20.54904 -19.77375 -17.98896 -17.76244 -17.59411 -16.79350 -16.63645 -16.52552 -16.29431 -15.81805 -15.69253 -15.56214 -15.43358 -14.97808 -14.85733 -14.71320 -14.22963 -14.05007 -13.88702 -13.65754 -13.47807 -13.40881 -13.12180 -13.06399 -12.76947 -12.75667 -12.64739 -12.46949 -12.33930 -12.16012 -12.12508 -11.92175 -11.85256 -11.82105 -11.70791 -11.63615 -11.40501 -11.40235 -11.25237 -10.87571 -10.63974 -10.04389 -10.02160 -9.16556 -8.49050 -5.98534 1.33094 1.37535 1.49630 1.69746 2.00901 2.21967 2.26258 2.94482 3.17373 3.24474 3.63493 3.72300 3.82517 3.95169 3.98607 4.08554 4.20487 4.31263 4.35713 4.36808 4.38938 4.42484 4.43374 4.46809 4.53660 4.64122 4.67032 4.78543 4.82018 4.90266 4.92066 4.94080 4.98664 5.03346 5.05154 5.13435 5.15212 5.19631 5.25364 5.26404 5.31072 5.35379 5.38407 5.41693 5.45735 5.51423 5.61748 5.89645 6.03615 6.11102 6.56695 6.64293 7.09441 7.35129 7.53121 8.08508 8.66606 Molecular weight = 339.23amu Principal moments of inertia in cm(-1) A = 0.020629 B = 0.002025 C = 0.001925 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1356.956230 B =13822.114037 C =14541.354049 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C -0.119 4.119 3 C -0.101 4.101 4 C -0.104 4.104 5 H 0.119 0.881 6 C -0.140 4.140 7 C 0.507 3.493 8 O -0.591 6.591 9 N -0.710 5.710 10 C 0.150 3.850 11 H 0.043 0.957 12 C -0.104 4.104 13 C -0.099 4.099 14 C 0.064 3.936 15 N -0.485 5.485 16 C 0.050 3.950 17 C 0.406 3.594 18 O -0.627 6.627 19 N -0.570 5.570 20 C -0.334 4.334 21 H 0.074 0.926 22 C -0.011 4.011 23 N -0.916 5.916 24 Si 0.989 3.011 25 H -0.273 1.273 26 H -0.268 1.268 27 H -0.276 1.276 28 C 0.051 3.949 29 C -0.104 4.104 30 H 0.045 0.955 31 H 0.066 0.934 32 H 0.049 0.951 33 H 0.071 0.929 34 H 0.080 0.920 35 H 0.051 0.949 36 H 0.044 0.956 37 H 0.048 0.952 38 H 0.089 0.911 39 H 0.077 0.923 40 H 0.416 0.584 41 H 0.052 0.948 42 H 0.085 0.915 43 H 0.044 0.956 44 H 0.076 0.924 45 H 0.041 0.959 46 H 0.022 0.978 47 H 0.117 0.883 48 H 0.109 0.891 49 H 0.397 0.603 50 H 0.278 0.722 51 H 0.024 0.976 52 H 0.070 0.930 53 H 0.084 0.916 54 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.700 -25.415 11.786 28.588 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C -0.156 4.156 3 C -0.139 4.139 4 C -0.125 4.125 5 H 0.136 0.864 6 C -0.197 4.197 7 C 0.295 3.705 8 O -0.471 6.471 9 N -0.362 5.362 10 C 0.045 3.955 11 H 0.061 0.939 12 C -0.142 4.142 13 C -0.138 4.138 14 C -0.065 4.065 15 N -0.207 5.207 16 C -0.082 4.082 17 C 0.193 3.807 18 O -0.515 6.515 19 N -0.207 5.207 20 C -0.464 4.464 21 H 0.092 0.908 22 C -0.211 4.211 23 N -0.557 5.557 24 Si 0.813 3.187 25 H -0.198 1.198 26 H -0.193 1.193 27 H -0.201 1.201 28 C -0.077 4.077 29 C -0.142 4.142 30 H 0.064 0.936 31 H 0.085 0.915 32 H 0.068 0.932 33 H 0.090 0.910 34 H 0.099 0.901 35 H 0.070 0.930 36 H 0.063 0.937 37 H 0.067 0.933 38 H 0.108 0.892 39 H 0.096 0.904 40 H 0.254 0.746 41 H 0.070 0.930 42 H 0.104 0.896 43 H 0.063 0.937 44 H 0.095 0.905 45 H 0.060 0.940 46 H 0.040 0.960 47 H 0.135 0.865 48 H 0.127 0.873 49 H 0.231 0.769 50 H 0.088 0.912 51 H 0.043 0.957 52 H 0.089 0.911 53 H 0.102 0.898 54 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges -6.581 -25.102 11.764 28.493 hybrid contribution -0.159 1.656 -1.626 2.326 sum -6.741 -23.447 10.137 26.419 Atomic orbital electron populations 1.21793 0.96046 1.02084 1.01417 1.21568 0.95821 0.94986 1.03212 1.21403 0.93076 0.97814 1.01575 1.21384 0.97179 0.91216 1.02681 0.86357 1.21835 1.02153 1.01902 0.93859 1.21446 0.82232 0.92370 0.74484 1.90707 1.56654 1.48425 1.51327 1.46004 1.06999 1.09096 1.74101 1.20567 0.95303 0.82598 0.97033 0.93875 1.21480 1.02606 0.94084 0.96071 1.21832 0.98292 0.95731 0.97939 1.21760 0.89959 0.97386 0.97430 1.62214 1.07758 1.10175 1.40531 1.22358 0.98013 0.93806 0.94039 1.22197 0.86001 0.83138 0.89412 1.90502 1.30140 1.68564 1.62274 1.42085 1.28218 1.23923 1.26444 1.19611 1.12655 1.08150 1.05979 0.90767 1.25991 0.95965 0.97353 1.01777 1.69657 1.19899 1.24461 1.41695 0.84987 0.78025 0.78044 0.77626 1.19824 1.19258 1.20075 1.20964 1.01478 0.92458 0.92793 1.20764 0.94892 0.96381 1.02131 0.93612 0.91495 0.93153 0.91023 0.90140 0.93040 0.93673 0.93307 0.89232 0.90440 0.74626 0.92973 0.89594 0.93731 0.90521 0.94044 0.95963 0.86490 0.87279 0.76925 0.91246 0.95744 0.91107 0.89757 0.88288 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.88 9.91 71.98 0.71 -1.17 16 2 C -0.12 -1.32 5.69 30.59 0.17 -1.14 16 3 C -0.10 -1.72 4.03 30.59 0.12 -1.60 16 4 C -0.10 -1.48 2.72 -11.54 -0.03 -1.51 16 5 H 0.12 1.18 8.14 -2.39 -0.02 1.16 16 6 C -0.14 -1.25 8.84 71.98 0.64 -0.61 16 7 C 0.51 11.76 6.98 87.66 0.61 12.37 16 8 O -0.59 -20.37 15.58 -3.03 -0.05 -20.42 16 9 N -0.71 -13.44 4.88 -444.02 -2.17 -15.61 16 10 C 0.15 3.77 2.13 44.68 0.10 3.86 16 11 H 0.04 1.51 6.59 -2.39 -0.02 1.50 16 12 C -0.10 -2.53 5.13 30.21 0.15 -2.37 16 13 C -0.10 -2.86 6.15 31.40 0.19 -2.67 16 14 C 0.06 2.27 3.88 87.16 0.34 2.61 16 15 N -0.49 -15.24 4.45 -916.41 -4.08 -19.32 16 16 C 0.05 1.66 5.55 85.56 0.47 2.14 16 17 C 0.41 18.89 6.99 87.66 0.61 19.50 16 18 O -0.63 -33.80 11.98 -3.07 -0.04 -33.84 16 19 N -0.57 -29.09 5.29 -306.97 -1.62 -30.71 16 20 C -0.33 -19.10 9.68 84.04 0.81 -18.28 16 21 H 0.07 4.57 7.16 -2.91 -0.02 4.55 16 22 C -0.01 -0.57 5.50 84.93 0.47 -0.11 16 23 N -0.92 -49.47 13.05 21.66 0.28 -49.19 16 24 Si 0.99 43.55 29.55 68.60 2.03 45.58 16 25 H -0.27 -11.74 7.11 99.48 0.71 -11.03 16 26 H -0.27 -11.08 7.11 99.48 0.71 -10.38 16 27 H -0.28 -12.29 7.11 99.48 0.71 -11.59 16 28 C 0.05 1.57 4.15 83.94 0.35 1.92 16 29 C -0.10 -2.27 5.02 28.92 0.15 -2.13 16 30 H 0.04 0.63 8.14 -2.39 -0.02 0.61 16 31 H 0.07 0.62 8.14 -2.39 -0.02 0.60 16 32 H 0.05 0.64 8.14 -2.39 -0.02 0.62 16 33 H 0.07 0.67 8.14 -2.39 -0.02 0.65 16 34 H 0.08 0.65 6.56 -2.39 -0.02 0.63 16 35 H 0.05 1.04 8.14 -2.39 -0.02 1.02 16 36 H 0.04 0.99 7.96 -2.38 -0.02 0.97 16 37 H 0.05 0.58 8.14 -2.39 -0.02 0.56 16 38 H 0.09 0.48 6.56 -2.39 -0.02 0.46 16 39 H 0.08 0.44 7.56 -2.39 -0.02 0.42 16 40 H 0.42 4.55 8.03 -92.70 -0.74 3.81 16 41 H 0.05 1.29 7.81 -2.39 -0.02 1.27 16 42 H 0.09 1.80 7.38 -2.39 -0.02 1.78 16 43 H 0.04 1.39 8.14 -2.39 -0.02 1.37 16 44 H 0.08 1.94 8.14 -2.39 -0.02 1.92 16 45 H 0.04 1.58 7.32 -2.39 -0.02 1.57 16 46 H 0.02 0.96 5.57 -2.39 -0.01 0.95 16 47 H 0.12 3.34 7.92 -2.39 -0.02 3.32 16 48 H 0.11 3.29 8.11 -2.39 -0.02 3.27 16 49 H 0.40 19.21 7.90 -92.71 -0.73 18.47 16 50 H 0.28 14.06 8.31 -92.71 -0.77 13.29 16 51 H 0.02 0.98 5.72 -2.39 -0.01 0.97 16 52 H 0.07 2.09 7.66 -2.39 -0.02 2.07 16 53 H 0.08 1.59 8.14 -2.39 -0.02 1.57 16 54 H 0.10 1.69 7.58 -2.39 -0.02 1.67 16 Total: -1.00 -74.29 411.58 -0.35 -74.64 By element: Atomic # 1 Polarization: 38.64 SS G_CDS: -0.58 Total: 38.06 kcal Atomic # 6 Polarization: 4.94 SS G_CDS: 5.87 Total: 10.81 kcal Atomic # 7 Polarization: -107.24 SS G_CDS: -7.58 Total: -114.83 kcal Atomic # 8 Polarization: -54.17 SS G_CDS: -0.08 Total: -54.26 kcal Atomic # 14 Polarization: 43.55 SS G_CDS: 2.03 Total: 45.58 kcal Total: -74.29 -0.35 -74.64 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001717193383.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -41.588 kcal (2) G-P(sol) polarization free energy of solvation -74.290 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -115.877 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.352 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.642 kcal (6) G-S(sol) free energy of system = (1) + (5) -116.229 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.23 seconds