Wall clock time and date at job start Sat Apr 11 2020 05:52:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53001 * 109.46964 * 2 1 4 4 C 1.52997 * 109.47049 * 179.97438 * 3 2 1 5 5 H 1.09001 * 109.46832 * 55.00084 * 4 3 2 6 6 C 1.52997 * 109.47232 * 294.99885 * 4 3 2 7 7 C 1.50706 * 109.47238 * 174.99770 * 4 3 2 8 8 O 1.21279 * 119.99507 * 0.02562 * 7 4 3 9 9 N 1.34774 * 120.00020 * 180.02562 * 7 4 3 10 10 C 1.46496 * 119.99544 * 180.02562 * 9 7 4 11 11 H 1.08993 * 109.57654 * 34.99929 * 10 9 7 12 12 C 1.54525 * 109.57263 * 274.74565 * 10 9 7 13 13 C 1.45878 * 111.66912 * 162.96040 * 12 10 9 14 14 C 1.53981 * 112.67073 * 61.50470 * 13 12 10 15 15 N 1.44303 * 108.31087 * 278.59094 * 14 13 12 16 16 C 1.46895 * 111.00173 * 221.34694 * 15 14 13 17 17 C 1.50701 * 109.47095 * 293.95455 * 16 15 14 18 18 O 1.21289 * 119.99748 * 359.97438 * 17 16 15 19 19 N 1.34773 * 119.99731 * 180.02562 * 17 16 15 20 20 C 1.37099 * 119.99906 * 180.02562 * 19 17 16 21 21 H 1.08006 * 119.99974 * 359.97438 * 20 19 17 22 22 C 1.38945 * 120.00435 * 179.97438 * 20 19 17 23 23 N 1.31414 * 119.99713 * 359.97438 * 22 20 19 24 24 Si 1.86796 * 120.00277 * 179.97438 * 22 20 19 25 25 H 1.48506 * 109.47427 * 90.00060 * 24 22 20 26 26 H 1.48501 * 109.47446 * 209.99654 * 24 22 20 27 27 H 1.48503 * 109.47553 * 330.00021 * 24 22 20 28 28 C 1.47942 * 113.64313 * 95.39167 * 15 14 13 29 29 C 1.50541 * 109.56982 * 155.24953 * 10 9 7 30 30 H 1.09002 * 109.46615 * 60.00388 * 1 2 3 31 31 H 1.09001 * 109.46969 * 179.97438 * 1 2 3 32 32 H 1.08998 * 109.47254 * 300.00142 * 1 2 3 33 33 H 1.08998 * 109.47254 * 239.99857 * 2 1 3 34 34 H 1.08998 * 109.46957 * 119.99959 * 2 1 3 35 35 H 1.08998 * 109.47252 * 59.99856 * 3 2 1 36 36 H 1.08998 * 109.47250 * 299.99780 * 3 2 1 37 37 H 1.09000 * 109.47140 * 179.97438 * 6 4 3 38 38 H 1.08992 * 109.47280 * 299.99702 * 6 4 3 39 39 H 1.09002 * 109.46777 * 60.00422 * 6 4 3 40 40 H 0.96994 * 119.99756 * 0.02562 * 9 7 4 41 41 H 1.08992 * 109.04473 * 283.52640 * 12 10 9 42 42 H 1.09004 * 109.04029 * 42.47857 * 12 10 9 43 43 H 1.09008 * 108.83918 * 182.32277 * 13 12 10 44 44 H 1.08993 * 108.84628 * 300.78274 * 13 12 10 45 45 H 1.09001 * 109.69554 * 38.29438 * 14 13 12 46 46 H 1.08997 * 109.69663 * 158.88903 * 14 13 12 47 47 H 1.09000 * 109.46976 * 53.95460 * 16 15 14 48 48 H 1.09005 * 109.47020 * 173.95256 * 16 15 14 49 49 H 0.96999 * 120.00692 * 359.97438 * 19 17 16 50 50 H 0.97002 * 119.99891 * 180.02562 * 23 22 20 51 51 H 1.09003 * 108.70707 * 79.13589 * 28 15 14 52 52 H 1.08997 * 108.71216 * 197.14594 * 28 15 14 53 53 H 1.08996 * 108.79148 * 332.45175 * 29 10 9 54 54 H 1.09000 * 108.79080 * 90.67103 * 29 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4425 0.0006 5 1 3.9336 0.8530 -0.8410 6 6 4.0794 0.8332 1.3083 7 6 4.0724 2.8580 -0.1232 8 8 3.2842 3.7763 -0.2036 9 7 5.3974 3.1033 -0.1447 10 6 5.8857 4.4793 -0.2646 11 1 5.2143 5.1527 0.2681 12 6 5.9445 4.8796 -1.7559 13 6 6.0328 6.3262 -1.9222 14 6 7.3034 6.9202 -1.2870 15 7 7.0695 7.0829 0.1277 16 6 7.6177 8.3580 0.6087 17 6 9.1202 8.3339 0.4942 18 8 9.6792 7.3510 0.0555 19 7 9.8426 9.4042 0.8803 20 6 11.2094 9.3825 0.7756 21 1 11.7072 8.5076 0.3842 22 6 11.9543 10.4860 1.1731 23 7 11.3485 11.5508 1.6489 24 14 13.8166 10.4562 1.0312 25 1 14.2200 10.9752 -0.3004 26 1 14.4078 11.3080 2.0942 27 1 14.3027 9.0616 1.1868 28 6 7.5622 5.9521 0.9444 29 6 7.2683 4.5767 0.3229 30 1 -0.3632 0.5138 -0.8901 31 1 -0.3633 -1.0277 -0.0005 32 1 -0.3634 0.5138 0.8899 33 1 1.8934 -0.5138 -0.8899 34 1 1.8933 -0.5138 0.8900 35 1 1.6766 1.9564 0.8899 36 1 1.6767 1.9563 -0.8900 37 1 5.1694 0.8328 1.3085 38 1 3.7158 1.4227 2.1498 39 1 3.7161 -0.1906 1.3978 40 1 6.0277 2.3688 -0.0808 41 1 6.8173 4.4151 -2.2147 42 1 5.0458 4.5194 -2.2565 43 1 6.0298 6.5589 -2.9872 44 1 5.1607 6.7876 -1.4591 45 1 8.1437 6.2441 -1.4450 46 1 7.5208 7.8888 -1.7371 47 1 7.2204 9.1747 0.0060 48 1 7.3350 8.5049 1.6512 49 1 9.3955 10.1901 1.2315 50 1 11.8685 12.3213 1.9260 51 1 8.6397 6.0563 1.0718 52 1 7.0906 5.9981 1.9260 53 1 7.3775 3.8124 1.0923 54 1 7.9983 4.3864 -0.4638 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001717193385.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:52:24 Heat of formation + Delta-G solvation = -115.129761 kcal Electronic energy + Delta-G solvation = -30370.837686 eV Core-core repulsion = 26340.601689 eV Total energy + Delta-G solvation = -4030.235998 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 339.231 amu Computer time = 1.25 seconds Orbital eigenvalues (eV) -41.41813 -40.70429 -39.10596 -36.98998 -36.40841 -35.69984 -34.21032 -33.33370 -33.12252 -32.04353 -29.23742 -27.48470 -26.93310 -26.37478 -25.22486 -24.37981 -22.03482 -21.57924 -21.47544 -20.81233 -20.46018 -19.79000 -17.94054 -17.81351 -17.51574 -16.95878 -16.63810 -16.55820 -16.20058 -15.85933 -15.67184 -15.48837 -15.24305 -14.91025 -14.77214 -14.73967 -14.25416 -14.06588 -13.93025 -13.83266 -13.49390 -13.41550 -13.11488 -13.04032 -12.72347 -12.66896 -12.46617 -12.44285 -12.31498 -12.14927 -12.10682 -11.97528 -11.83414 -11.78353 -11.67898 -11.66103 -11.53982 -11.38382 -11.34774 -10.79304 -10.61262 -10.02616 -9.96543 -8.97867 -8.46712 -5.97030 1.35181 1.39662 1.51893 1.72191 2.01423 2.24158 2.27764 2.97641 3.19149 3.25907 3.70076 3.73129 3.83648 3.90023 4.00664 4.12816 4.17523 4.23782 4.33324 4.37860 4.40249 4.41584 4.44731 4.49692 4.58258 4.66023 4.67788 4.80400 4.82876 4.89176 4.93486 4.96829 4.98555 5.02696 5.06071 5.13480 5.16125 5.17599 5.24915 5.26999 5.32305 5.33939 5.39106 5.46614 5.48346 5.53344 5.64190 5.91761 6.08132 6.29954 6.57331 6.64829 7.10197 7.35424 7.54431 8.08153 8.68477 Molecular weight = 339.23amu Principal moments of inertia in cm(-1) A = 0.031560 B = 0.001867 C = 0.001838 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 886.973668 B =14991.054499 C =15229.302866 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C -0.120 4.120 3 C -0.099 4.099 4 C -0.104 4.104 5 H 0.118 0.882 6 C -0.143 4.143 7 C 0.510 3.490 8 O -0.584 6.584 9 N -0.715 5.715 10 C 0.160 3.840 11 H 0.073 0.927 12 C -0.113 4.113 13 C -0.104 4.104 14 C 0.070 3.930 15 N -0.515 5.515 16 C 0.052 3.948 17 C 0.409 3.591 18 O -0.621 6.621 19 N -0.570 5.570 20 C -0.333 4.333 21 H 0.079 0.921 22 C -0.012 4.012 23 N -0.919 5.919 24 Si 0.992 3.008 25 H -0.272 1.272 26 H -0.271 1.271 27 H -0.273 1.273 28 C 0.049 3.951 29 C -0.112 4.112 30 H 0.048 0.952 31 H 0.064 0.936 32 H 0.049 0.951 33 H 0.071 0.929 34 H 0.076 0.924 35 H 0.051 0.949 36 H 0.050 0.950 37 H 0.072 0.928 38 H 0.047 0.953 39 H 0.088 0.912 40 H 0.412 0.588 41 H 0.064 0.936 42 H 0.056 0.944 43 H 0.071 0.929 44 H 0.062 0.938 45 H 0.037 0.963 46 H 0.051 0.949 47 H 0.107 0.893 48 H 0.106 0.894 49 H 0.395 0.605 50 H 0.277 0.723 51 H 0.045 0.955 52 H 0.068 0.932 53 H 0.091 0.909 54 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.279 -21.656 -2.486 27.206 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C -0.157 4.157 3 C -0.137 4.137 4 C -0.126 4.126 5 H 0.136 0.864 6 C -0.200 4.200 7 C 0.298 3.702 8 O -0.464 6.464 9 N -0.366 5.366 10 C 0.056 3.944 11 H 0.091 0.909 12 C -0.151 4.151 13 C -0.142 4.142 14 C -0.058 4.058 15 N -0.238 5.238 16 C -0.080 4.080 17 C 0.196 3.804 18 O -0.509 6.509 19 N -0.207 5.207 20 C -0.463 4.463 21 H 0.097 0.903 22 C -0.212 4.212 23 N -0.560 5.560 24 Si 0.816 3.184 25 H -0.197 1.197 26 H -0.196 1.196 27 H -0.198 1.198 28 C -0.078 4.078 29 C -0.150 4.150 30 H 0.067 0.933 31 H 0.083 0.917 32 H 0.068 0.932 33 H 0.090 0.910 34 H 0.095 0.905 35 H 0.070 0.930 36 H 0.069 0.931 37 H 0.091 0.909 38 H 0.067 0.933 39 H 0.107 0.893 40 H 0.249 0.751 41 H 0.082 0.918 42 H 0.075 0.925 43 H 0.090 0.910 44 H 0.081 0.919 45 H 0.056 0.944 46 H 0.070 0.930 47 H 0.125 0.875 48 H 0.124 0.876 49 H 0.229 0.771 50 H 0.087 0.913 51 H 0.063 0.937 52 H 0.086 0.914 53 H 0.109 0.891 54 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -16.882 -21.474 -2.698 27.448 hybrid contribution 1.988 0.810 0.066 2.148 sum -14.893 -20.664 -2.632 25.607 Atomic orbital electron populations 1.21787 0.95946 1.02028 1.01515 1.21574 0.95898 0.95169 1.03073 1.21390 0.92809 0.97694 1.01800 1.21384 0.97366 0.91470 1.02330 0.86374 1.21841 1.01940 1.01956 0.94257 1.21334 0.82083 0.92277 0.74467 1.90691 1.56409 1.48102 1.51201 1.46128 1.07162 1.09189 1.74153 1.20493 0.95056 0.83087 0.95812 0.90893 1.20819 1.01550 0.96721 0.96039 1.20365 0.97771 0.95755 1.00346 1.21698 0.96466 0.99933 0.87735 1.61373 1.57193 1.01400 1.03789 1.22193 0.87953 0.94083 1.03722 1.22060 0.91760 0.83704 0.82849 1.90437 1.73864 1.34436 1.52115 1.42118 1.06683 1.15798 1.56101 1.19658 0.83019 1.01941 1.41703 0.90320 1.26035 1.04842 0.94380 0.95983 1.69677 1.38256 1.05324 1.42711 0.84946 0.76977 0.78213 0.78299 1.19739 1.19610 1.19786 1.22452 0.99574 0.89536 0.96250 1.21467 0.95658 0.96612 1.01240 0.93320 0.91675 0.93190 0.91008 0.90514 0.93048 0.93108 0.90875 0.93336 0.89327 0.75108 0.91773 0.92525 0.91019 0.91905 0.94436 0.93041 0.87464 0.87604 0.77084 0.91317 0.93655 0.91397 0.89070 0.92025 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.70 9.91 71.98 0.71 -0.98 16 2 C -0.12 -1.23 5.69 30.60 0.17 -1.05 16 3 C -0.10 -1.54 4.03 30.59 0.12 -1.42 16 4 C -0.10 -1.40 2.72 -11.54 -0.03 -1.44 16 5 H 0.12 1.08 8.14 -2.39 -0.02 1.06 16 6 C -0.14 -1.36 8.84 71.98 0.64 -0.73 16 7 C 0.51 11.00 7.07 87.66 0.62 11.62 16 8 O -0.58 -18.26 15.59 -3.02 -0.05 -18.31 16 9 N -0.71 -13.25 4.88 -443.87 -2.17 -15.41 16 10 C 0.16 3.86 2.15 44.71 0.10 3.96 16 11 H 0.07 2.21 7.24 -2.39 -0.02 2.19 16 12 C -0.11 -2.75 4.96 28.93 0.14 -2.61 16 13 C -0.10 -2.77 5.38 28.74 0.15 -2.61 16 14 C 0.07 2.28 4.21 87.12 0.37 2.65 16 15 N -0.52 -16.78 4.18 -901.14 -3.76 -20.55 16 16 C 0.05 1.82 5.63 85.56 0.48 2.30 16 17 C 0.41 18.78 7.05 87.66 0.62 19.39 16 18 O -0.62 -31.94 12.12 -3.06 -0.04 -31.97 16 19 N -0.57 -28.85 5.29 -306.99 -1.62 -30.47 16 20 C -0.33 -18.68 9.68 84.04 0.81 -17.86 16 21 H 0.08 4.68 7.16 -2.91 -0.02 4.66 16 22 C -0.01 -0.66 5.50 84.92 0.47 -0.19 16 23 N -0.92 -49.46 13.05 21.66 0.28 -49.18 16 24 Si 0.99 42.65 29.55 68.60 2.03 44.68 16 25 H -0.27 -11.38 7.11 99.48 0.71 -10.67 16 26 H -0.27 -11.08 7.11 99.48 0.71 -10.37 16 27 H -0.27 -11.76 7.11 99.48 0.71 -11.05 16 28 C 0.05 1.57 5.08 86.36 0.44 2.01 16 29 C -0.11 -2.75 4.86 30.06 0.15 -2.61 16 30 H 0.05 0.58 8.14 -2.39 -0.02 0.56 16 31 H 0.06 0.56 8.14 -2.39 -0.02 0.54 16 32 H 0.05 0.59 8.14 -2.39 -0.02 0.57 16 33 H 0.07 0.60 8.14 -2.39 -0.02 0.58 16 34 H 0.08 0.61 6.56 -2.39 -0.02 0.59 16 35 H 0.05 0.97 8.14 -2.39 -0.02 0.95 16 36 H 0.05 0.98 7.96 -2.39 -0.02 0.97 16 37 H 0.07 0.52 7.57 -2.39 -0.02 0.50 16 38 H 0.05 0.61 8.14 -2.39 -0.02 0.59 16 39 H 0.09 0.53 6.56 -2.39 -0.02 0.52 16 40 H 0.41 5.00 7.95 -92.71 -0.74 4.26 16 41 H 0.06 1.47 7.60 -2.39 -0.02 1.45 16 42 H 0.06 1.42 8.07 -2.39 -0.02 1.40 16 43 H 0.07 1.71 8.14 -2.38 -0.02 1.69 16 44 H 0.06 1.79 8.08 -2.39 -0.02 1.77 16 45 H 0.04 1.36 6.13 -2.39 -0.01 1.35 16 46 H 0.05 1.76 7.43 -2.39 -0.02 1.74 16 47 H 0.11 3.39 7.91 -2.39 -0.02 3.37 16 48 H 0.11 3.33 8.14 -2.38 -0.02 3.31 16 49 H 0.40 19.23 7.90 -92.71 -0.73 18.50 16 50 H 0.28 14.01 8.31 -92.71 -0.77 13.24 16 51 H 0.05 1.79 5.28 -2.39 -0.01 1.78 16 52 H 0.07 2.01 8.14 -2.39 -0.02 1.99 16 53 H 0.09 1.82 7.90 -2.39 -0.02 1.80 16 54 H 0.06 1.61 6.67 -2.39 -0.02 1.59 16 Total: -1.00 -69.40 412.44 0.06 -69.34 By element: Atomic # 1 Polarization: 42.02 SS G_CDS: -0.58 Total: 41.45 kcal Atomic # 6 Polarization: 4.47 SS G_CDS: 5.96 Total: 10.43 kcal Atomic # 7 Polarization: -108.34 SS G_CDS: -7.27 Total: -115.61 kcal Atomic # 8 Polarization: -50.20 SS G_CDS: -0.08 Total: -50.28 kcal Atomic # 14 Polarization: 42.65 SS G_CDS: 2.03 Total: 44.68 kcal Total: -69.40 0.06 -69.34 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001717193385.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -45.791 kcal (2) G-P(sol) polarization free energy of solvation -69.396 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -115.187 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.058 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.339 kcal (6) G-S(sol) free energy of system = (1) + (5) -115.130 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.25 seconds