Wall clock time and date at job start Sat Apr 11 2020 05:52:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52999 * 109.46495 * 2 1 4 4 C 1.53002 * 109.46849 * 180.02562 * 3 2 1 5 5 C 1.50700 * 109.47338 * 179.97438 * 4 3 2 6 6 O 1.21283 * 119.99941 * 359.97438 * 5 4 3 7 7 N 1.34773 * 120.00560 * 180.02562 * 5 4 3 8 8 C 1.46497 * 120.00528 * 180.02562 * 7 5 4 9 9 H 1.09000 * 109.52290 * 325.12334 * 8 7 5 10 10 C 1.53118 * 109.52650 * 85.31365 * 8 7 5 11 11 C 1.53037 * 109.28027 * 177.56523 * 10 8 7 12 12 N 1.46856 * 109.51769 * 300.81633 * 11 10 8 13 13 C 1.46903 * 110.99562 * 185.84152 * 12 11 10 14 14 C 1.50698 * 109.46940 * 169.43522 * 13 12 11 15 15 O 1.21298 * 120.00138 * 353.78059 * 14 13 12 16 16 N 1.34773 * 120.00341 * 173.77949 * 14 13 12 17 17 C 1.37098 * 120.00430 * 180.02562 * 16 14 13 18 18 H 1.08000 * 119.99713 * 359.97438 * 17 16 14 19 19 C 1.38943 * 120.00212 * 180.02562 * 17 16 14 20 20 N 1.31409 * 120.00284 * 179.97438 * 19 17 16 21 21 Si 1.86810 * 120.00008 * 359.97438 * 19 17 16 22 22 H 1.48498 * 109.46860 * 90.00291 * 21 19 17 23 23 H 1.48497 * 109.46897 * 210.00486 * 21 19 17 24 24 H 1.48496 * 109.47037 * 330.00432 * 21 19 17 25 25 C 1.46847 * 111.19505 * 61.74577 * 12 11 10 26 26 C 1.53036 * 109.52453 * 298.25250 * 25 12 11 27 27 C 1.53004 * 109.50418 * 299.24250 * 26 25 12 28 28 C 1.52999 * 109.53697 * 179.14283 * 26 25 12 29 29 H 1.09008 * 109.46926 * 179.97438 * 1 2 3 30 30 H 1.08994 * 109.47774 * 299.99959 * 1 2 3 31 31 H 1.08999 * 109.47531 * 60.00458 * 1 2 3 32 32 H 1.08995 * 109.47293 * 240.00260 * 2 1 3 33 33 H 1.08995 * 109.46875 * 119.99252 * 2 1 3 34 34 H 1.08997 * 109.47647 * 60.00089 * 3 2 1 35 35 H 1.09008 * 109.47178 * 299.99433 * 3 2 1 36 36 H 1.08996 * 109.47461 * 59.99392 * 4 3 2 37 37 H 1.08999 * 109.47297 * 299.99615 * 4 3 2 38 38 H 0.97000 * 119.99548 * 359.97438 * 7 5 4 39 39 H 1.09001 * 109.50207 * 297.50185 * 10 8 7 40 40 H 1.08998 * 109.50661 * 57.61879 * 10 8 7 41 41 H 1.08994 * 109.46212 * 180.80750 * 11 10 8 42 42 H 1.08996 * 109.46131 * 60.83010 * 11 10 8 43 43 H 1.08998 * 109.46905 * 289.43195 * 13 12 11 44 44 H 1.08992 * 109.47009 * 49.43504 * 13 12 11 45 45 H 0.97002 * 119.99924 * 359.97438 * 16 14 13 46 46 H 0.97005 * 120.00257 * 179.97438 * 20 19 17 47 47 H 1.09002 * 109.45707 * 178.24312 * 25 12 11 48 48 H 1.08997 * 109.46588 * 58.27405 * 25 12 11 49 49 H 1.09002 * 109.46889 * 179.80110 * 27 26 25 50 50 H 1.09000 * 109.46991 * 299.80323 * 27 26 25 51 51 H 1.09001 * 109.46984 * 59.80276 * 27 26 25 52 52 H 1.09001 * 109.46867 * 300.18052 * 28 26 25 53 53 H 1.09000 * 109.47133 * 60.18023 * 28 26 25 54 54 H 1.09000 * 109.47201 * 180.17628 * 28 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0398 1.4425 0.0000 4 6 3.5698 1.4426 -0.0006 5 6 4.0721 2.8635 -0.0013 6 8 3.2840 3.7853 -0.0017 7 7 5.3972 3.1099 -0.0024 8 6 5.8854 4.4911 -0.0025 9 1 5.2117 5.1156 -0.5891 10 6 5.9462 5.0125 1.4359 11 6 6.5140 6.4336 1.4347 12 7 7.8572 6.4248 0.8411 13 6 8.4890 7.7467 0.9488 14 6 9.9442 7.6401 0.5720 15 8 10.4366 6.5529 0.3554 16 7 10.6986 8.7527 0.4756 17 6 12.0224 8.6558 0.1323 18 1 12.4607 7.6878 -0.0605 19 6 12.8002 9.8029 0.0335 20 7 14.0692 9.7100 -0.2950 21 14 12.0422 11.4772 0.3678 22 1 12.1832 11.8055 1.8091 23 1 12.7382 12.5068 -0.4450 24 1 10.6025 11.4501 0.0049 25 6 7.8176 5.9726 -0.5554 26 6 7.2886 4.5378 -0.6136 27 6 8.2209 3.6172 0.1766 28 6 7.2270 4.0738 -2.0703 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3634 0.5138 0.8899 31 1 -0.3634 0.5137 -0.8900 32 1 1.8933 -0.5138 -0.8900 33 1 1.8933 -0.5137 0.8900 34 1 1.6765 1.9564 0.8899 35 1 1.6765 1.9564 -0.8901 36 1 3.9329 0.9289 -0.8907 37 1 3.9336 0.9288 0.8891 38 1 6.0275 2.3726 -0.0025 39 1 4.9431 5.0218 1.8622 40 1 6.5892 4.3642 2.0312 41 1 6.5720 6.8024 2.4587 42 1 5.8631 7.0842 0.8507 43 1 7.9896 8.4439 0.2760 44 1 8.4045 8.1072 1.9739 45 1 10.3048 9.6222 0.6485 46 1 14.6122 10.5108 -0.3644 47 1 8.8223 6.0066 -0.9768 48 1 7.1606 6.6255 -1.1301 49 1 7.8417 2.5960 0.1378 50 1 9.2195 3.6509 -0.2588 51 1 8.2654 3.9490 1.2140 52 1 6.5639 4.7309 -2.6331 53 1 8.2261 4.1072 -2.5048 54 1 6.8472 3.0530 -2.1107 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001717305976.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:52:45 Heat of formation + Delta-G solvation = -110.999931 kcal Electronic energy + Delta-G solvation = -30622.259183 eV Core-core repulsion = 26592.202268 eV Total energy + Delta-G solvation = -4030.056915 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 339.231 amu Computer time = 1.24 seconds Orbital eigenvalues (eV) -41.64003 -40.46054 -39.51761 -36.67790 -36.13241 -35.80876 -34.37000 -33.70714 -32.64971 -31.19695 -28.98059 -28.19100 -27.56406 -26.49127 -25.35780 -23.88229 -22.44688 -21.95218 -21.24234 -21.15550 -20.16614 -19.66873 -17.96945 -17.72945 -17.29915 -16.87783 -16.80947 -16.43441 -16.20036 -15.70275 -15.56724 -15.38736 -15.12430 -14.91691 -14.77882 -14.59651 -14.49655 -14.17961 -14.09428 -13.85411 -13.62473 -13.30927 -13.19972 -12.99034 -12.89087 -12.86220 -12.57825 -12.47717 -12.39933 -12.21672 -12.15736 -12.04918 -11.98166 -11.83987 -11.74688 -11.51114 -11.46174 -11.41900 -11.28853 -10.76533 -10.30993 -10.20155 -9.97379 -9.18327 -8.39425 -5.99150 1.30316 1.35401 1.43768 1.72432 1.99968 2.23443 2.24698 2.61269 3.16505 3.21589 3.54453 3.79450 3.83384 3.87737 3.97758 4.09476 4.11667 4.16684 4.24353 4.35435 4.37403 4.41459 4.48517 4.49985 4.50810 4.64646 4.67684 4.68225 4.77983 4.81775 4.84729 4.91041 4.97062 4.97968 5.01424 5.02664 5.09668 5.13870 5.19343 5.22877 5.30774 5.34604 5.41617 5.51179 5.55368 5.57659 5.64362 5.92284 6.04230 6.20501 6.62584 6.63339 6.91699 7.33532 7.43505 8.00935 8.78176 Molecular weight = 339.23amu Principal moments of inertia in cm(-1) A = 0.033092 B = 0.001996 C = 0.001940 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 845.911861 B =14022.271392 C =14428.779127 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C -0.120 4.120 3 C -0.103 4.103 4 C -0.135 4.135 5 C 0.508 3.492 6 O -0.587 6.587 7 N -0.713 5.713 8 C 0.164 3.836 9 H 0.066 0.934 10 C -0.118 4.118 11 C 0.059 3.941 12 N -0.526 5.526 13 C 0.052 3.948 14 C 0.453 3.547 15 O -0.596 6.596 16 N -0.596 5.596 17 C -0.323 4.323 18 H 0.057 0.943 19 C -0.015 4.015 20 N -0.936 5.936 21 Si 0.962 3.038 22 H -0.258 1.258 23 H -0.277 1.277 24 H -0.234 1.234 25 C 0.068 3.932 26 C -0.056 4.056 27 C -0.122 4.122 28 C -0.137 4.137 29 H 0.063 0.937 30 H 0.049 0.951 31 H 0.049 0.951 32 H 0.071 0.929 33 H 0.072 0.928 34 H 0.052 0.948 35 H 0.051 0.949 36 H 0.115 0.885 37 H 0.116 0.884 38 H 0.412 0.588 39 H 0.069 0.931 40 H 0.078 0.922 41 H 0.092 0.908 42 H 0.038 0.962 43 H 0.071 0.929 44 H 0.121 0.879 45 H 0.387 0.613 46 H 0.278 0.722 47 H 0.062 0.938 48 H 0.029 0.971 49 H 0.070 0.930 50 H 0.034 0.966 51 H 0.059 0.941 52 H 0.051 0.949 53 H 0.050 0.950 54 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.801 -14.979 1.967 29.899 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C -0.158 4.158 3 C -0.141 4.141 4 C -0.174 4.174 5 C 0.296 3.704 6 O -0.468 6.468 7 N -0.365 5.365 8 C 0.059 3.941 9 H 0.084 0.916 10 C -0.157 4.157 11 C -0.069 4.069 12 N -0.250 5.250 13 C -0.079 4.079 14 C 0.241 3.759 15 O -0.480 6.480 16 N -0.238 5.238 17 C -0.452 4.452 18 H 0.075 0.925 19 C -0.213 4.213 20 N -0.577 5.577 21 Si 0.782 3.218 22 H -0.182 1.182 23 H -0.202 1.202 24 H -0.158 1.158 25 C -0.060 4.060 26 C -0.057 4.057 27 C -0.179 4.179 28 C -0.195 4.195 29 H 0.082 0.918 30 H 0.068 0.932 31 H 0.068 0.932 32 H 0.090 0.910 33 H 0.091 0.909 34 H 0.071 0.929 35 H 0.069 0.931 36 H 0.133 0.867 37 H 0.134 0.866 38 H 0.250 0.750 39 H 0.088 0.912 40 H 0.096 0.904 41 H 0.111 0.889 42 H 0.056 0.944 43 H 0.089 0.911 44 H 0.139 0.861 45 H 0.223 0.777 46 H 0.087 0.913 47 H 0.080 0.920 48 H 0.047 0.953 49 H 0.089 0.911 50 H 0.053 0.947 51 H 0.078 0.922 52 H 0.070 0.930 53 H 0.069 0.931 54 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -25.551 -15.322 2.042 29.863 hybrid contribution 0.395 1.634 -0.524 1.761 sum -25.156 -13.688 1.517 28.679 Atomic orbital electron populations 1.21790 0.96003 1.01981 1.01563 1.21523 0.95916 0.95392 1.02954 1.21323 0.93425 0.97401 1.01926 1.21754 0.97393 0.91749 1.06537 1.21394 0.81889 0.92730 0.74352 1.90685 1.56356 1.48200 1.51518 1.46106 1.07162 1.08551 1.74663 1.20797 0.93597 0.83471 0.96235 0.91579 1.21906 1.00767 0.96230 0.96756 1.22132 0.87234 0.96980 1.00522 1.61461 1.20237 1.24941 1.18403 1.21831 0.90392 0.91536 1.04124 1.20812 0.89428 0.83911 0.81754 1.90531 1.74931 1.28388 1.54102 1.42067 1.09356 1.08144 1.64224 1.18985 0.85342 0.95383 1.45497 0.92474 1.26046 0.95611 1.03129 0.96508 1.69800 1.07797 1.31544 1.48518 0.85405 0.79935 0.76914 0.79516 1.18209 1.20186 1.15767 1.22127 1.00410 0.95152 0.88342 1.20701 0.93822 0.94860 0.96351 1.21666 0.97799 0.97928 1.00555 1.21809 1.01678 1.01979 0.94010 0.91842 0.93155 0.93212 0.90981 0.90931 0.92944 0.93053 0.86674 0.86601 0.74989 0.91242 0.90353 0.88922 0.94426 0.91100 0.86090 0.77742 0.91277 0.91982 0.95269 0.91109 0.94655 0.92184 0.92959 0.93073 0.90465 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.56 9.91 71.98 0.71 -0.84 16 2 C -0.12 -1.10 5.93 30.59 0.18 -0.91 16 3 C -0.10 -1.38 4.50 30.59 0.14 -1.24 16 4 C -0.13 -1.43 5.70 29.85 0.17 -1.26 16 5 C 0.51 9.46 7.80 87.66 0.68 10.15 16 6 O -0.59 -16.29 15.64 -3.04 -0.05 -16.34 16 7 N -0.71 -11.72 4.36 -442.16 -1.93 -13.65 16 8 C 0.16 3.52 1.64 45.07 0.07 3.59 16 9 H 0.07 1.69 7.58 -2.39 -0.02 1.67 16 10 C -0.12 -2.53 5.32 30.65 0.16 -2.36 16 11 C 0.06 1.35 5.46 86.32 0.47 1.82 16 12 N -0.53 -15.52 3.63 -900.93 -3.27 -18.79 16 13 C 0.05 1.62 5.45 85.56 0.47 2.09 16 14 C 0.45 20.18 7.31 87.66 0.64 20.82 16 15 O -0.60 -31.89 14.28 -3.08 -0.04 -31.93 16 16 N -0.60 -27.96 5.09 -306.99 -1.56 -29.53 16 17 C -0.32 -18.80 10.16 84.04 0.85 -17.95 16 18 H 0.06 3.95 7.39 -2.91 -0.02 3.93 16 19 C -0.01 -0.81 5.50 84.93 0.47 -0.34 16 20 N -0.94 -56.45 13.96 21.66 0.30 -56.14 16 21 Si 0.96 39.08 27.74 68.60 1.90 40.98 16 22 H -0.26 -9.94 7.11 99.48 0.71 -9.23 16 23 H -0.28 -11.20 7.11 99.48 0.71 -10.50 16 24 H -0.23 -8.09 6.52 99.48 0.65 -7.44 16 25 C 0.07 2.07 3.84 86.33 0.33 2.40 16 26 C -0.06 -1.34 0.57 -52.13 -0.03 -1.37 16 27 C -0.12 -3.00 7.83 71.98 0.56 -2.43 16 28 C -0.14 -2.91 8.35 71.98 0.60 -2.31 16 29 H 0.06 0.51 8.14 -2.38 -0.02 0.49 16 30 H 0.05 0.54 8.14 -2.39 -0.02 0.52 16 31 H 0.05 0.54 8.14 -2.39 -0.02 0.52 16 32 H 0.07 0.53 8.14 -2.39 -0.02 0.51 16 33 H 0.07 0.53 8.14 -2.39 -0.02 0.51 16 34 H 0.05 0.87 8.10 -2.39 -0.02 0.85 16 35 H 0.05 0.86 8.10 -2.38 -0.02 0.84 16 36 H 0.12 0.74 8.14 -2.39 -0.02 0.72 16 37 H 0.12 0.74 8.14 -2.39 -0.02 0.72 16 38 H 0.41 4.77 6.67 -92.71 -0.62 4.15 16 39 H 0.07 1.52 8.14 -2.39 -0.02 1.50 16 40 H 0.08 1.69 6.58 -2.39 -0.02 1.67 16 41 H 0.09 1.84 8.01 -2.39 -0.02 1.82 16 42 H 0.04 0.83 8.14 -2.39 -0.02 0.81 16 43 H 0.07 1.90 8.12 -2.39 -0.02 1.88 16 44 H 0.12 3.08 7.98 -2.39 -0.02 3.06 16 45 H 0.39 15.23 5.76 -92.71 -0.53 14.69 16 46 H 0.28 15.36 8.31 -92.70 -0.77 14.59 16 47 H 0.06 2.42 6.05 -2.39 -0.01 2.41 16 48 H 0.03 0.84 8.14 -2.39 -0.02 0.82 16 49 H 0.07 1.20 6.41 -2.39 -0.02 1.19 16 50 H 0.03 1.07 8.14 -2.39 -0.02 1.05 16 51 H 0.06 1.66 6.01 -2.39 -0.01 1.64 16 52 H 0.05 1.11 8.14 -2.39 -0.02 1.09 16 53 H 0.05 1.21 8.14 -2.39 -0.02 1.19 16 54 H 0.08 1.28 7.62 -2.39 -0.02 1.26 16 Total: -1.00 -78.12 415.24 1.52 -76.60 By element: Atomic # 1 Polarization: 39.28 SS G_CDS: -0.33 Total: 38.95 kcal Atomic # 6 Polarization: 3.35 SS G_CDS: 6.49 Total: 9.84 kcal Atomic # 7 Polarization: -111.65 SS G_CDS: -6.46 Total: -118.10 kcal Atomic # 8 Polarization: -48.18 SS G_CDS: -0.09 Total: -48.27 kcal Atomic # 14 Polarization: 39.08 SS G_CDS: 1.90 Total: 40.98 kcal Total: -78.12 1.52 -76.60 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001717305976.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -34.397 kcal (2) G-P(sol) polarization free energy of solvation -78.118 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -112.515 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.515 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.603 kcal (6) G-S(sol) free energy of system = (1) + (5) -111.000 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.24 seconds