Wall clock time and date at job start Sat Apr 11 2020 05:53:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46502 * 1 3 3 C 1.46499 * 120.00092 * 2 1 4 4 C 1.52997 * 109.47348 * 270.00205 * 3 2 1 5 5 C 1.53000 * 109.46864 * 300.00030 * 4 3 2 6 6 C 1.53003 * 109.47050 * 59.99786 * 4 3 2 7 7 C 1.53001 * 109.47293 * 180.02562 * 4 3 2 8 8 N 1.46501 * 109.46895 * 179.97438 * 7 4 3 9 9 C 1.36930 * 119.99774 * 179.97438 * 8 7 4 10 10 H 1.08007 * 120.00100 * 0.02562 * 9 8 7 11 11 C 1.38814 * 120.00251 * 180.02562 * 9 8 7 12 12 N 1.31622 * 120.00242 * 180.02562 * 11 9 8 13 13 Si 1.86804 * 119.99783 * 0.02562 * 11 9 8 14 14 H 1.48494 * 109.47222 * 89.99477 * 13 11 9 15 15 H 1.48494 * 109.46953 * 209.99716 * 13 11 9 16 16 H 1.48501 * 109.46828 * 329.99509 * 13 11 9 17 17 C 1.34770 * 119.99950 * 179.97438 * 2 1 3 18 18 O 1.21280 * 120.00076 * 184.45039 * 17 2 1 19 19 C 1.50704 * 119.99918 * 4.44801 * 17 2 1 20 20 H 1.08997 * 109.47101 * 310.31383 * 19 17 2 21 21 C 1.52995 * 109.47118 * 70.31173 * 19 17 2 22 22 C 1.53002 * 109.47287 * 179.97438 * 21 19 17 23 23 C 1.52998 * 109.47201 * 299.99869 * 22 21 19 24 24 C 1.53000 * 109.46835 * 60.00235 * 23 22 21 25 25 H 1.08995 * 109.47777 * 59.99640 * 24 23 22 26 26 C 1.50704 * 109.47269 * 180.02562 * 24 23 22 27 27 N 1.34772 * 119.99404 * 299.99884 * 26 24 23 28 28 O 1.21273 * 120.00070 * 119.99431 * 26 24 23 29 29 C 1.52998 * 109.47281 * 190.31214 * 19 17 2 30 30 H 1.09002 * 109.47047 * 263.35061 * 1 2 3 31 31 H 1.09004 * 109.47119 * 23.34822 * 1 2 3 32 32 H 1.08997 * 109.47224 * 143.35017 * 1 2 3 33 33 H 1.09004 * 109.46808 * 30.00220 * 3 2 1 34 34 H 1.08997 * 109.47297 * 149.99747 * 3 2 1 35 35 H 1.09003 * 109.47175 * 59.99424 * 5 4 3 36 36 H 1.08993 * 109.47395 * 180.02562 * 5 4 3 37 37 H 1.09007 * 109.47172 * 300.00123 * 5 4 3 38 38 H 1.08999 * 109.47163 * 60.00463 * 6 4 3 39 39 H 1.09002 * 109.46517 * 180.02562 * 6 4 3 40 40 H 1.08998 * 109.46908 * 300.00029 * 6 4 3 41 41 H 1.08999 * 109.47063 * 299.99624 * 7 4 3 42 42 H 1.08997 * 109.47038 * 59.99758 * 7 4 3 43 43 H 0.96996 * 120.00316 * 0.02562 * 8 7 4 44 44 H 0.97002 * 119.99506 * 180.02562 * 12 11 9 45 45 H 1.09007 * 109.47050 * 59.99958 * 21 19 17 46 46 H 1.08997 * 109.47198 * 300.00023 * 21 19 17 47 47 H 1.08997 * 109.46822 * 60.00277 * 22 21 19 48 48 H 1.09007 * 109.47057 * 179.97438 * 22 21 19 49 49 H 1.08997 * 109.46906 * 179.97438 * 23 22 21 50 50 H 1.08995 * 109.47202 * 300.00329 * 23 22 21 51 51 H 0.97002 * 120.00510 * 359.97438 * 27 26 24 52 52 H 0.97006 * 119.99486 * 179.97438 * 27 26 24 53 53 H 1.09007 * 109.47011 * 300.00118 * 29 19 17 54 54 H 1.09002 * 109.47358 * 59.99608 * 29 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.4525 1.7104 -1.4425 5 6 3.2794 0.6441 -2.1637 6 6 1.1156 1.8934 -2.1637 7 6 3.2181 3.0351 -1.4424 8 7 3.4628 3.4577 -2.8237 9 6 4.1360 4.6236 -3.0739 10 1 4.4870 5.2313 -2.2529 11 6 4.3674 5.0243 -4.3826 12 7 5.0150 6.1447 -4.6231 13 14 3.7597 3.9735 -5.8025 14 1 2.3865 4.3956 -6.1784 15 1 4.6658 4.1428 -6.9667 16 1 3.7438 2.5468 -5.3909 17 6 2.1389 -1.1671 0.0005 18 8 3.3489 -1.1687 0.0820 19 6 1.3887 -2.4703 -0.1001 20 1 0.5803 -2.4816 0.6309 21 6 0.8059 -2.6159 -1.5072 22 6 0.0448 -3.9393 -1.6096 23 6 1.0012 -5.1006 -1.3312 24 6 1.5840 -4.9550 0.0760 25 1 0.7758 -4.9667 0.8071 26 6 2.5267 -6.0984 0.3501 27 7 2.0746 -7.3676 0.3146 28 8 3.6919 -5.8766 0.6026 29 6 2.3447 -3.6319 0.1786 30 1 -0.3633 -0.1190 1.0208 31 1 -0.3633 0.9435 -0.4073 32 1 -0.3633 -0.8245 -0.6134 33 1 1.6084 2.0283 0.5139 34 1 3.1499 1.1384 0.5138 35 1 2.7344 -0.2999 -2.1636 36 1 3.4614 0.9589 -3.1912 37 1 4.2318 0.5137 -1.6498 38 1 0.5265 2.6531 -1.6499 39 1 1.2974 2.2077 -3.1915 40 1 0.5707 0.9494 -2.1637 41 1 2.6294 3.7950 -0.9285 42 1 4.1705 2.9043 -0.9287 43 1 3.1472 2.9121 -3.5609 44 1 5.1763 6.4248 -5.5377 45 1 1.6143 -2.6046 -2.2383 46 1 0.1248 -1.7884 -1.7058 47 1 -0.7636 -3.9510 -0.8785 48 1 -0.3708 -4.0428 -2.6120 49 1 0.4589 -6.0432 -1.4037 50 1 1.8096 -5.0888 -2.0622 51 1 1.1425 -7.5451 0.1130 52 1 2.6814 -8.1037 0.4907 53 1 3.1531 -3.6206 -0.5525 54 1 2.7600 -3.5282 1.1811 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001717458495.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:53:21 Heat of formation + Delta-G solvation = -108.680648 kcal Electronic energy + Delta-G solvation = -31542.590952 eV Core-core repulsion = 27512.634609 eV Total energy + Delta-G solvation = -4029.956343 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 339.231 amu Computer time = 2.85 seconds Orbital eigenvalues (eV) -41.80412 -40.75371 -39.08617 -37.95653 -36.50694 -34.97037 -34.68603 -32.86436 -31.98462 -31.78684 -28.84789 -28.21954 -27.55357 -26.82148 -24.97709 -24.54125 -23.44603 -21.86081 -20.76335 -20.40249 -20.04362 -19.30480 -18.55624 -17.68459 -17.64538 -16.94345 -16.93613 -16.45732 -16.26108 -15.89622 -15.59033 -15.54828 -15.26571 -14.92740 -14.76835 -14.60832 -14.37060 -14.17331 -13.97469 -13.92713 -13.63470 -13.41074 -13.29540 -13.16192 -13.07420 -12.82668 -12.59073 -12.53812 -12.30429 -12.26899 -12.13897 -12.10396 -11.77385 -11.71608 -11.61632 -11.54286 -11.47578 -11.33319 -11.00329 -10.79393 -10.63201 -10.49438 -9.51562 -9.30050 -8.04793 -5.37061 1.32321 1.36649 1.43546 1.65084 1.70041 2.07872 2.45141 2.63989 3.25983 3.43478 3.63305 3.73206 3.73992 3.83519 3.90673 3.95485 4.03636 4.15883 4.22313 4.31297 4.37284 4.42650 4.44639 4.48807 4.53269 4.62750 4.65192 4.69652 4.77718 4.82962 4.88529 4.90837 4.96060 5.06589 5.09024 5.10937 5.12953 5.15228 5.17358 5.26049 5.33631 5.35089 5.36258 5.49660 5.52779 5.63988 5.73644 5.91529 6.19662 6.50016 6.50946 7.05921 7.30071 7.38959 7.82631 8.02642 9.17092 Molecular weight = 339.23amu Principal moments of inertia in cm(-1) A = 0.017845 B = 0.002526 C = 0.002471 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1568.699727 B =11082.082404 C =11327.670203 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.054 3.946 2 N -0.606 5.606 3 C 0.133 3.867 4 C -0.079 4.079 5 C -0.115 4.115 6 C -0.131 4.131 7 C 0.165 3.835 8 N -0.752 5.752 9 C -0.232 4.232 10 H 0.055 0.945 11 C -0.064 4.064 12 N -0.984 5.984 13 Si 0.952 3.048 14 H -0.269 1.269 15 H -0.295 1.295 16 H -0.260 1.260 17 C 0.505 3.495 18 O -0.584 6.584 19 C -0.092 4.092 20 H 0.131 0.869 21 C -0.119 4.119 22 C -0.106 4.106 23 C -0.110 4.110 24 C -0.097 4.097 25 H 0.137 0.863 26 C 0.512 3.488 27 N -0.835 5.835 28 O -0.602 6.602 29 C -0.077 4.077 30 H 0.076 0.924 31 H 0.087 0.913 32 H 0.099 0.901 33 H 0.103 0.897 34 H 0.057 0.943 35 H 0.056 0.944 36 H 0.032 0.968 37 H 0.030 0.970 38 H 0.070 0.930 39 H 0.034 0.966 40 H 0.080 0.920 41 H 0.036 0.964 42 H 0.008 0.992 43 H 0.366 0.634 44 H 0.258 0.742 45 H 0.041 0.959 46 H 0.095 0.905 47 H 0.100 0.900 48 H 0.084 0.916 49 H 0.102 0.898 50 H 0.045 0.955 51 H 0.420 0.580 52 H 0.404 0.596 53 H 0.036 0.964 54 H 0.045 0.955 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.981 -30.376 10.931 40.216 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.087 4.087 2 N -0.338 5.338 3 C 0.009 3.991 4 C -0.080 4.080 5 C -0.173 4.173 6 C -0.188 4.188 7 C 0.038 3.962 8 N -0.398 5.398 9 C -0.363 4.363 10 H 0.073 0.927 11 C -0.256 4.256 12 N -0.634 5.634 13 Si 0.779 3.221 14 H -0.195 1.195 15 H -0.222 1.222 16 H -0.185 1.185 17 C 0.295 3.705 18 O -0.464 6.464 19 C -0.113 4.113 20 H 0.149 0.851 21 C -0.156 4.156 22 C -0.144 4.144 23 C -0.148 4.148 24 C -0.118 4.118 25 H 0.154 0.846 26 C 0.298 3.702 27 N -0.399 5.399 28 O -0.483 6.483 29 C -0.116 4.116 30 H 0.095 0.905 31 H 0.106 0.894 32 H 0.117 0.883 33 H 0.121 0.879 34 H 0.076 0.924 35 H 0.075 0.925 36 H 0.051 0.949 37 H 0.049 0.951 38 H 0.089 0.911 39 H 0.054 0.946 40 H 0.099 0.901 41 H 0.054 0.946 42 H 0.026 0.974 43 H 0.200 0.800 44 H 0.067 0.933 45 H 0.060 0.940 46 H 0.113 0.887 47 H 0.118 0.882 48 H 0.102 0.898 49 H 0.121 0.879 50 H 0.064 0.936 51 H 0.252 0.748 52 H 0.235 0.765 53 H 0.055 0.945 54 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges -22.591 -29.875 11.191 39.092 hybrid contribution 1.035 -0.133 -1.024 1.462 sum -21.556 -30.009 10.167 38.322 Atomic orbital electron populations 1.22490 0.76909 1.05474 1.03823 1.47837 1.08447 1.04702 1.72770 1.21300 0.97643 0.85703 0.94474 1.21043 0.96457 0.93730 0.96785 1.21631 0.98981 0.97892 0.98799 1.21867 0.95063 1.02467 0.99447 1.20727 0.96247 0.93891 0.85297 1.42705 1.68858 1.24687 1.03560 1.19057 1.26874 0.97674 0.92711 0.92661 1.25483 1.01475 0.98779 0.99844 1.69885 1.48320 1.25310 1.19923 0.85459 0.78223 0.79287 0.79139 1.19455 1.22160 1.18541 1.21306 0.87621 0.86649 0.74932 1.90732 1.16781 1.87931 1.50919 1.21333 0.98749 0.89684 1.01552 0.85078 1.21759 1.00071 1.00767 0.93044 1.21523 0.97577 0.91142 1.04118 1.21609 0.99178 1.01218 0.92768 1.21349 0.97802 0.90921 1.01734 0.84558 1.21162 0.88268 0.86030 0.74752 1.43731 1.16233 1.06785 1.73121 1.90775 1.21137 1.85681 1.50702 1.21004 0.96760 0.92660 1.01161 0.90535 0.89400 0.88324 0.87894 0.92408 0.92498 0.94851 0.95095 0.91130 0.94636 0.90095 0.94585 0.97387 0.79954 0.93319 0.93977 0.88732 0.88162 0.89752 0.87943 0.93626 0.74799 0.76478 0.94513 0.93574 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.05 0.50 8.53 127.77 1.09 1.59 16 2 N -0.61 -11.94 2.40 -846.76 -2.03 -13.97 16 3 C 0.13 3.38 4.58 86.38 0.40 3.78 16 4 C -0.08 -2.43 0.60 -52.18 -0.03 -2.46 16 5 C -0.12 -4.10 7.04 71.98 0.51 -3.59 16 6 C -0.13 -3.34 7.07 71.98 0.51 -2.83 16 7 C 0.17 6.68 5.15 86.38 0.44 7.12 16 8 N -0.75 -36.98 4.81 -343.45 -1.65 -38.63 16 9 C -0.23 -13.87 10.47 84.04 0.88 -12.99 16 10 H 0.06 3.61 8.06 -2.91 -0.02 3.58 16 11 C -0.06 -3.95 5.50 84.86 0.47 -3.48 16 12 N -0.98 -64.98 13.97 21.65 0.30 -64.67 16 13 Si 0.95 47.21 27.74 68.60 1.90 49.12 16 14 H -0.27 -12.62 7.11 99.48 0.71 -11.92 16 15 H -0.29 -14.77 7.11 99.48 0.71 -14.06 16 16 H -0.26 -12.02 6.52 99.48 0.65 -11.38 16 17 C 0.51 12.32 5.20 87.66 0.46 12.78 16 18 O -0.58 -21.10 14.11 -3.03 -0.04 -21.14 16 19 C -0.09 -1.38 1.71 -11.54 -0.02 -1.40 16 20 H 0.13 0.98 7.66 -2.39 -0.02 0.97 16 21 C -0.12 -1.31 4.90 30.59 0.15 -1.16 16 22 C -0.11 -0.44 5.92 30.59 0.18 -0.26 16 23 C -0.11 -0.73 5.10 30.59 0.16 -0.57 16 24 C -0.10 -1.07 2.53 -11.55 -0.03 -1.10 16 25 H 0.14 0.51 8.14 -2.39 -0.02 0.50 16 26 C 0.51 8.61 7.43 87.66 0.65 9.26 16 27 N -0.83 -5.62 8.77 -173.54 -1.52 -7.14 16 28 O -0.60 -18.11 16.82 -3.01 -0.05 -18.16 16 29 C -0.08 -1.59 3.12 30.58 0.10 -1.50 16 30 H 0.08 0.43 8.14 -2.39 -0.02 0.42 16 31 H 0.09 0.75 6.36 -2.38 -0.02 0.73 16 32 H 0.10 0.47 4.38 -2.39 -0.01 0.46 16 33 H 0.10 2.09 8.07 -2.38 -0.02 2.07 16 34 H 0.06 1.82 7.36 -2.39 -0.02 1.80 16 35 H 0.06 1.81 6.21 -2.39 -0.01 1.79 16 36 H 0.03 1.28 6.86 -2.39 -0.02 1.26 16 37 H 0.03 1.24 7.83 -2.38 -0.02 1.23 16 38 H 0.07 1.58 8.07 -2.39 -0.02 1.57 16 39 H 0.03 1.08 6.86 -2.39 -0.02 1.06 16 40 H 0.08 1.52 6.09 -2.39 -0.01 1.51 16 41 H 0.04 1.40 8.14 -2.39 -0.02 1.38 16 42 H 0.01 0.36 8.14 -2.39 -0.02 0.34 16 43 H 0.37 17.29 3.22 -92.71 -0.30 16.99 16 44 H 0.26 16.18 8.31 -92.71 -0.77 15.41 16 45 H 0.04 0.74 8.14 -2.38 -0.02 0.72 16 46 H 0.09 0.72 5.47 -2.39 -0.01 0.71 16 47 H 0.10 -0.13 8.14 -2.39 -0.02 -0.15 16 48 H 0.08 0.24 8.14 -2.38 -0.02 0.23 16 49 H 0.10 0.01 7.56 -2.39 -0.02 -0.01 16 50 H 0.04 0.56 8.14 -2.39 -0.02 0.54 16 51 H 0.42 -0.60 8.25 -92.71 -0.76 -1.36 16 52 H 0.40 2.57 8.93 -92.70 -0.83 1.74 16 53 H 0.04 1.07 7.94 -2.38 -0.02 1.05 16 54 H 0.05 1.19 8.10 -2.39 -0.02 1.17 16 Total: -1.00 -92.84 400.93 1.78 -91.06 By element: Atomic # 1 Polarization: 21.38 SS G_CDS: -1.03 Total: 20.35 kcal Atomic # 6 Polarization: -2.71 SS G_CDS: 5.90 Total: 3.20 kcal Atomic # 7 Polarization: -119.51 SS G_CDS: -4.90 Total: -124.41 kcal Atomic # 8 Polarization: -39.21 SS G_CDS: -0.09 Total: -39.31 kcal Atomic # 14 Polarization: 47.21 SS G_CDS: 1.90 Total: 49.12 kcal Total: -92.84 1.78 -91.06 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001717458495.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.619 kcal (2) G-P(sol) polarization free energy of solvation -92.844 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -110.463 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.782 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -91.062 kcal (6) G-S(sol) free energy of system = (1) + (5) -108.681 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.85 seconds