Wall clock time and date at job start Sat Apr 11 2020 05:54:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.52997 * 109.46826 * 2 1 4 4 C 1.52997 * 109.47338 * 120.00214 * 2 1 3 5 5 H 1.09001 * 109.47333 * 184.99886 * 4 2 1 6 6 C 1.53003 * 109.47069 * 64.99579 * 4 2 1 7 7 C 1.53000 * 109.46976 * 175.00129 * 6 4 2 8 8 N 1.46495 * 109.47292 * 180.02562 * 7 6 4 9 9 C 1.46502 * 120.00302 * 270.00257 * 8 7 6 10 10 C 1.34783 * 120.00086 * 89.99967 * 8 7 6 11 11 O 1.21284 * 119.99802 * 354.86908 * 10 8 7 12 12 C 1.50691 * 119.99945 * 174.87346 * 10 8 7 13 13 H 1.09004 * 108.56757 * 32.46128 * 12 10 8 14 14 C 1.51778 * 108.61688 * 274.52557 * 12 10 8 15 15 C 1.52993 * 110.88554 * 171.87891 * 14 12 10 16 16 N 1.47199 * 108.66190 * 86.46611 * 15 14 12 17 17 C 1.33367 * 120.42633 * 288.02031 * 16 15 14 18 18 O 1.21285 * 119.88801 * 180.31198 * 17 16 15 19 19 C 1.51425 * 120.22105 * 0.33156 * 17 16 15 20 20 C 1.51797 * 108.61823 * 150.26474 * 12 10 8 21 21 N 1.46500 * 109.47085 * 304.99950 * 4 2 1 22 22 C 1.36932 * 120.00025 * 275.00071 * 21 4 2 23 23 H 1.08005 * 120.00195 * 359.97438 * 22 21 4 24 24 C 1.38820 * 120.00338 * 180.02562 * 22 21 4 25 25 N 1.31620 * 120.00223 * 180.02562 * 24 22 21 26 26 Si 1.86797 * 119.99650 * 359.97438 * 24 22 21 27 27 H 1.48503 * 109.47071 * 90.00618 * 26 24 22 28 28 H 1.48500 * 109.47202 * 210.00069 * 26 24 22 29 29 H 1.48503 * 109.47531 * 330.00461 * 26 24 22 30 30 H 1.09007 * 109.46832 * 299.99713 * 1 2 3 31 31 H 1.08991 * 109.47408 * 59.99720 * 1 2 3 32 32 H 1.09000 * 109.46997 * 180.02562 * 1 2 3 33 33 H 1.08997 * 109.46773 * 240.00229 * 2 1 3 34 34 H 1.08997 * 109.47257 * 60.00526 * 3 2 1 35 35 H 1.09009 * 109.46693 * 179.97438 * 3 2 1 36 36 H 1.09003 * 109.47473 * 299.99898 * 3 2 1 37 37 H 1.09000 * 109.47408 * 294.99987 * 6 4 2 38 38 H 1.08996 * 109.46955 * 55.00295 * 6 4 2 39 39 H 1.09009 * 109.47039 * 300.00367 * 7 6 4 40 40 H 1.08997 * 109.47391 * 59.99794 * 7 6 4 41 41 H 1.08991 * 109.47361 * 95.33280 * 9 8 7 42 42 H 1.08994 * 109.46915 * 215.33883 * 9 8 7 43 43 H 1.09003 * 109.46317 * 335.33614 * 9 8 7 44 44 H 1.09000 * 109.19291 * 292.23724 * 14 12 10 45 45 H 1.08995 * 109.19350 * 51.56505 * 14 12 10 46 46 H 1.08995 * 109.60134 * 206.22077 * 15 14 12 47 47 H 1.08996 * 109.60371 * 326.54827 * 15 14 12 48 48 H 0.97000 * 119.77996 * 108.04808 * 16 15 14 49 49 H 1.09003 * 109.63205 * 190.91128 * 19 17 16 50 50 H 1.09006 * 109.63161 * 311.30730 * 19 17 16 51 51 H 1.09001 * 109.22079 * 308.25135 * 20 12 10 52 52 H 1.09000 * 109.22046 * 67.59896 * 20 12 10 53 53 H 0.97000 * 120.00048 * 94.99729 * 21 4 2 54 54 H 0.96995 * 119.99765 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0401 -0.7213 1.2492 5 1 3.1264 -0.6444 1.2951 6 6 1.6353 -2.1955 1.1879 7 6 2.2503 -2.9429 2.3728 8 7 1.8632 -4.3546 2.3139 9 6 0.6389 -4.8069 2.9793 10 6 2.6334 -5.2373 1.6474 11 8 3.5955 -4.8493 1.0190 12 6 2.2991 -6.7062 1.6830 13 1 1.2166 -6.8143 1.7511 14 6 2.9259 -7.3159 2.9236 15 6 2.4553 -8.7583 3.1198 16 7 3.3338 -9.6499 2.3451 17 6 3.2616 -9.6792 1.0137 18 8 3.9862 -10.4216 0.3853 19 6 2.2785 -8.7883 0.2839 20 6 2.7660 -7.3411 0.3856 21 7 1.4560 -0.1037 2.4423 22 6 2.0442 1.0001 2.9997 23 1 2.9391 1.4152 2.5599 24 6 1.4911 1.5850 4.1306 25 7 2.0563 2.6463 4.6660 26 14 -0.0561 0.8667 4.8917 27 1 0.3179 -0.1520 5.9054 28 1 -0.8363 1.9496 5.5428 29 1 -0.8801 0.2313 3.8321 30 1 -0.3633 0.5138 0.8901 31 1 -0.3634 0.5138 -0.8899 32 1 -0.3633 -1.0277 0.0005 33 1 1.8933 -0.5138 -0.8900 34 1 1.6767 1.9563 0.8900 35 1 3.1301 1.4425 0.0005 36 1 1.6767 1.9564 -0.8900 37 1 0.5491 -2.2762 1.2316 38 1 1.9949 -2.6326 0.2564 39 1 3.3365 -2.8622 2.3291 40 1 1.8907 -2.5058 3.3043 41 1 -0.1796 -4.8268 2.2598 42 1 0.7930 -5.8078 3.3822 43 1 0.3925 -4.1223 3.7910 44 1 4.0109 -7.3039 2.8197 45 1 2.6428 -6.7256 3.7951 46 1 2.5089 -9.0199 4.1765 47 1 1.4280 -8.8586 2.7698 48 1 3.9690 -10.2200 2.8060 49 1 2.2243 -9.0838 -0.7639 50 1 1.2931 -8.8786 0.7412 51 1 2.3724 -6.7699 -0.4553 52 1 3.8553 -7.3260 0.3503 53 1 0.6525 -0.4767 2.8376 54 1 1.6695 3.0552 5.4559 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001717514771.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:54:03 Heat of formation + Delta-G solvation = -100.523062 kcal Electronic energy + Delta-G solvation = -31142.744796 eV Core-core repulsion = 27113.142192 eV Total energy + Delta-G solvation = -4029.602604 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 339.231 amu Computer time = 1.32 seconds Orbital eigenvalues (eV) -41.72320 -40.60032 -39.13973 -37.52693 -36.65798 -34.87910 -34.73903 -33.11060 -32.32043 -31.57257 -28.42179 -28.04166 -27.73488 -26.51059 -25.12699 -24.66343 -23.14129 -21.88398 -20.74807 -20.52089 -19.93258 -19.45468 -18.50602 -18.24289 -17.41680 -17.07783 -16.66759 -16.45683 -15.98792 -15.85229 -15.55433 -15.24108 -15.02423 -14.95108 -14.60323 -14.58956 -14.50493 -14.21378 -14.05014 -13.76256 -13.53827 -13.29363 -13.18010 -12.98658 -12.92224 -12.86556 -12.81202 -12.76141 -12.40089 -12.35945 -12.13309 -11.95227 -11.87029 -11.83455 -11.73032 -11.69239 -11.30583 -11.22538 -10.87380 -10.85233 -10.69740 -10.08656 -9.62846 -9.16787 -7.90477 -5.21741 1.41120 1.46240 1.53824 1.57393 1.69291 2.04902 2.41268 2.57446 3.40252 3.40937 3.48994 3.66628 3.68422 3.83562 3.96445 4.09470 4.18320 4.19717 4.29163 4.34427 4.40334 4.41175 4.46879 4.48013 4.50997 4.64137 4.64859 4.71236 4.76807 4.78109 4.88726 4.92535 4.94909 4.99940 5.01926 5.03114 5.08770 5.17496 5.20889 5.26427 5.26533 5.36458 5.40035 5.59640 5.60179 5.75669 5.90188 5.92106 6.29024 6.32033 6.47996 7.19587 7.22144 7.25143 7.94053 8.16460 9.31604 Molecular weight = 339.23amu Principal moments of inertia in cm(-1) A = 0.017161 B = 0.002580 C = 0.002388 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1631.219552 B =10851.164334 C =11721.987723 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C -0.106 4.106 3 C -0.139 4.139 4 C 0.185 3.815 5 H 0.030 0.970 6 C -0.119 4.119 7 C 0.124 3.876 8 N -0.611 5.611 9 C 0.062 3.938 10 C 0.506 3.494 11 O -0.589 6.589 12 C -0.096 4.096 13 H 0.135 0.865 14 C -0.133 4.133 15 C 0.112 3.888 16 N -0.717 5.717 17 C 0.510 3.490 18 O -0.612 6.612 19 C -0.127 4.127 20 C -0.092 4.092 21 N -0.736 5.736 22 C -0.202 4.202 23 H 0.054 0.946 24 C -0.072 4.072 25 N -0.992 5.992 26 Si 0.949 3.051 27 H -0.277 1.277 28 H -0.308 1.308 29 H -0.245 1.245 30 H 0.040 0.960 31 H 0.053 0.947 32 H 0.063 0.937 33 H 0.069 0.931 34 H 0.049 0.951 35 H 0.031 0.969 36 H 0.051 0.949 37 H 0.079 0.921 38 H 0.064 0.936 39 H 0.049 0.951 40 H 0.080 0.920 41 H 0.076 0.924 42 H 0.105 0.895 43 H 0.075 0.925 44 H 0.050 0.950 45 H 0.100 0.900 46 H 0.123 0.877 47 H 0.111 0.889 48 H 0.403 0.597 49 H 0.097 0.903 50 H 0.132 0.868 51 H 0.078 0.922 52 H 0.041 0.959 53 H 0.366 0.634 54 H 0.253 0.747 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.365 -26.270 -3.199 28.072 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C -0.127 4.127 3 C -0.196 4.196 4 C 0.076 3.924 5 H 0.048 0.952 6 C -0.158 4.158 7 C 0.000 4.000 8 N -0.343 5.343 9 C -0.080 4.080 10 C 0.295 3.705 11 O -0.469 6.469 12 C -0.117 4.117 13 H 0.153 0.847 14 C -0.172 4.172 15 C -0.010 4.010 16 N -0.367 5.367 17 C 0.298 3.702 18 O -0.494 6.494 19 C -0.167 4.167 20 C -0.131 4.131 21 N -0.380 5.380 22 C -0.333 4.333 23 H 0.072 0.928 24 C -0.262 4.262 25 N -0.644 5.644 26 Si 0.777 3.223 27 H -0.203 1.203 28 H -0.236 1.236 29 H -0.169 1.169 30 H 0.059 0.941 31 H 0.072 0.928 32 H 0.082 0.918 33 H 0.087 0.913 34 H 0.068 0.932 35 H 0.050 0.950 36 H 0.070 0.930 37 H 0.098 0.902 38 H 0.083 0.917 39 H 0.068 0.932 40 H 0.098 0.902 41 H 0.094 0.906 42 H 0.123 0.877 43 H 0.094 0.906 44 H 0.069 0.931 45 H 0.118 0.882 46 H 0.141 0.859 47 H 0.129 0.871 48 H 0.239 0.761 49 H 0.116 0.884 50 H 0.150 0.850 51 H 0.096 0.904 52 H 0.060 0.940 53 H 0.200 0.800 54 H 0.061 0.939 Dipole moment (debyes) X Y Z Total from point charges -8.515 -26.156 -3.887 27.781 hybrid contribution 0.235 0.638 0.834 1.076 sum -8.280 -25.518 -3.053 27.001 Atomic orbital electron populations 1.21669 0.94688 1.01515 1.00934 1.21606 0.96885 0.95963 0.98255 1.21780 0.99240 0.97476 1.01132 1.20313 0.95364 0.90703 0.86025 0.95224 1.21998 1.01465 0.93892 0.98423 1.21315 0.99326 0.80135 0.99177 1.48070 1.25670 1.07659 1.52900 1.22244 0.85038 1.02532 0.98152 1.21411 0.81799 0.89638 0.77628 1.90708 1.31043 1.81343 1.43794 1.21109 1.04894 0.88868 0.96842 0.84695 1.21823 1.00782 0.97879 0.96688 1.22048 0.94817 0.86025 0.98154 1.46063 1.40944 1.43555 1.06169 1.21126 0.83810 0.81957 0.83309 1.90736 1.46768 1.43895 1.68009 1.21961 0.99522 0.92772 1.02404 1.20966 1.00746 0.94169 0.97175 1.42649 1.31067 1.33008 1.31263 1.18925 1.06159 1.02643 1.05612 0.92792 1.25439 1.02629 0.98613 0.99494 1.69900 1.43960 1.25476 1.25029 0.85485 0.80410 0.77368 0.78989 1.20314 1.23621 1.16932 0.94088 0.92830 0.91767 0.91260 0.93214 0.95026 0.92977 0.90203 0.91734 0.93206 0.90182 0.90589 0.87704 0.90586 0.93067 0.88152 0.85913 0.87129 0.76095 0.88420 0.85046 0.90356 0.93963 0.80032 0.93870 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.85 8.74 71.98 0.63 -3.22 16 2 C -0.11 -3.50 2.74 -10.79 -0.03 -3.53 16 3 C -0.14 -5.23 8.46 71.98 0.61 -4.63 16 4 C 0.18 6.61 2.13 44.99 0.10 6.71 16 5 H 0.03 1.22 8.08 -2.39 -0.02 1.20 16 6 C -0.12 -3.35 4.71 30.60 0.14 -3.20 16 7 C 0.12 3.47 5.30 86.38 0.46 3.93 16 8 N -0.61 -12.21 2.87 -846.77 -2.43 -14.65 16 9 C 0.06 0.61 9.83 127.77 1.26 1.86 16 10 C 0.51 11.18 6.57 87.65 0.58 11.76 16 11 O -0.59 -19.60 15.86 -3.04 -0.05 -19.65 16 12 C -0.10 -1.12 1.31 -12.34 -0.02 -1.14 16 13 H 0.14 0.47 6.32 -2.38 -0.02 0.46 16 14 C -0.13 -1.14 4.70 30.19 0.14 -1.00 16 15 C 0.11 0.29 6.46 86.24 0.56 0.85 16 16 N -0.72 -7.40 5.27 -462.59 -2.44 -9.84 16 17 C 0.51 8.99 7.06 88.11 0.62 9.61 16 18 O -0.61 -17.55 17.92 -3.05 -0.05 -17.61 16 19 C -0.13 -1.43 5.56 30.10 0.17 -1.26 16 20 C -0.09 -1.42 4.37 30.22 0.13 -1.29 16 21 N -0.74 -30.80 3.34 -322.93 -1.08 -31.88 16 22 C -0.20 -10.76 8.23 84.04 0.69 -10.07 16 23 H 0.05 3.25 7.56 -2.91 -0.02 3.23 16 24 C -0.07 -4.03 5.50 84.86 0.47 -3.57 16 25 N -0.99 -62.48 13.97 21.65 0.30 -62.18 16 26 Si 0.95 42.68 27.73 68.60 1.90 44.58 16 27 H -0.28 -11.94 7.11 99.48 0.71 -11.23 16 28 H -0.31 -14.62 7.11 99.48 0.71 -13.92 16 29 H -0.25 -9.57 6.52 99.48 0.65 -8.92 16 30 H 0.04 1.40 7.47 -2.38 -0.02 1.39 16 31 H 0.05 1.41 8.14 -2.39 -0.02 1.40 16 32 H 0.06 1.59 6.68 -2.39 -0.02 1.57 16 33 H 0.07 2.05 8.14 -2.39 -0.02 2.03 16 34 H 0.05 2.25 5.99 -2.39 -0.01 2.24 16 35 H 0.03 1.21 8.14 -2.38 -0.02 1.19 16 36 H 0.05 1.70 8.14 -2.39 -0.02 1.68 16 37 H 0.08 1.97 6.81 -2.39 -0.02 1.95 16 38 H 0.06 1.86 8.14 -2.39 -0.02 1.84 16 39 H 0.05 1.71 7.50 -2.38 -0.02 1.69 16 40 H 0.08 2.33 7.47 -2.39 -0.02 2.31 16 41 H 0.08 0.53 8.14 -2.39 -0.02 0.51 16 42 H 0.10 0.28 5.61 -2.39 -0.01 0.27 16 43 H 0.08 0.84 7.83 -2.39 -0.02 0.82 16 44 H 0.05 0.78 8.05 -2.39 -0.02 0.76 16 45 H 0.10 0.60 7.26 -2.39 -0.02 0.59 16 46 H 0.12 -0.28 8.14 -2.39 -0.02 -0.30 16 47 H 0.11 -0.27 6.73 -2.39 -0.02 -0.29 16 48 H 0.40 3.88 8.91 -92.71 -0.83 3.05 16 49 H 0.10 1.22 8.13 -2.39 -0.02 1.20 16 50 H 0.13 0.39 6.79 -2.38 -0.02 0.38 16 51 H 0.08 1.27 8.10 -2.39 -0.02 1.25 16 52 H 0.04 0.97 7.76 -2.39 -0.02 0.95 16 53 H 0.37 14.39 5.66 -92.71 -0.52 13.86 16 54 H 0.25 15.32 8.31 -92.71 -0.77 14.55 16 Total: -1.00 -83.85 409.38 2.14 -81.71 By element: Atomic # 1 Polarization: 28.21 SS G_CDS: -0.51 Total: 27.70 kcal Atomic # 6 Polarization: -4.69 SS G_CDS: 6.50 Total: 1.81 kcal Atomic # 7 Polarization: -112.89 SS G_CDS: -5.65 Total: -118.54 kcal Atomic # 8 Polarization: -37.16 SS G_CDS: -0.10 Total: -37.26 kcal Atomic # 14 Polarization: 42.68 SS G_CDS: 1.90 Total: 44.58 kcal Total: -83.85 2.14 -81.71 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001717514771.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.816 kcal (2) G-P(sol) polarization free energy of solvation -83.849 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -102.665 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.142 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.707 kcal (6) G-S(sol) free energy of system = (1) + (5) -100.523 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.33 seconds