Wall clock time and date at job start Sat Apr 11 2020 05:54:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52998 * 109.47442 * 2 1 4 4 C 1.53000 * 109.47392 * 120.00181 * 2 1 3 5 5 H 1.08993 * 109.47005 * 185.53311 * 4 2 1 6 6 C 1.52990 * 109.46938 * 305.53772 * 4 2 1 7 7 C 1.53001 * 109.47084 * 184.99830 * 6 4 2 8 8 N 1.46506 * 109.47460 * 179.97438 * 7 6 4 9 9 C 1.34771 * 120.00231 * 180.02562 * 8 7 6 10 10 O 1.21285 * 119.99874 * 0.02562 * 9 8 7 11 11 C 1.50700 * 120.00221 * 180.02562 * 9 8 7 12 12 H 1.09004 * 115.54634 * 34.33085 * 11 9 8 13 13 C 1.52999 * 117.50120 * 248.62236 * 11 9 8 14 14 C 1.52992 * 117.50140 * 179.97438 * 11 9 8 15 15 C 1.52996 * 117.50307 * 214.97946 * 14 11 9 16 16 C 1.53004 * 117.49762 * 0.02562 * 14 11 9 17 17 N 1.46905 * 109.46944 * 65.53519 * 4 2 1 18 18 C 1.46900 * 111.00189 * 86.33070 * 17 4 2 19 19 C 1.50690 * 109.47212 * 174.59912 * 18 17 4 20 20 O 1.21295 * 120.00086 * 0.02562 * 19 18 17 21 21 N 1.34778 * 120.00447 * 180.02562 * 19 18 17 22 22 C 1.37093 * 120.00551 * 179.97438 * 21 19 18 23 23 H 1.08005 * 119.99796 * 0.02562 * 22 21 19 24 24 C 1.38947 * 120.00130 * 179.97438 * 22 21 19 25 25 N 1.31413 * 120.00229 * 0.02562 * 24 22 21 26 26 Si 1.86808 * 120.00061 * 179.97438 * 24 22 21 27 27 H 1.48502 * 109.46965 * 59.99851 * 26 24 22 28 28 H 1.48494 * 109.46857 * 179.97438 * 26 24 22 29 29 H 1.48490 * 109.46822 * 299.99995 * 26 24 22 30 30 H 1.08997 * 109.47349 * 64.24525 * 1 2 3 31 31 H 1.09002 * 109.47046 * 184.24860 * 1 2 3 32 32 H 1.09001 * 109.46430 * 304.24513 * 1 2 3 33 33 H 1.09007 * 109.47001 * 239.99910 * 2 1 3 34 34 H 1.08995 * 109.47328 * 180.02562 * 3 2 1 35 35 H 1.09003 * 109.47246 * 300.00447 * 3 2 1 36 36 H 1.09007 * 109.47095 * 59.99968 * 3 2 1 37 37 H 1.08996 * 109.47596 * 64.99735 * 6 4 2 38 38 H 1.09001 * 109.47437 * 304.99587 * 6 4 2 39 39 H 1.09007 * 109.47287 * 59.99953 * 7 6 4 40 40 H 1.09000 * 109.47321 * 299.99614 * 7 6 4 41 41 H 0.96999 * 119.99544 * 0.02562 * 8 7 6 42 42 H 1.08999 * 117.49656 * 145.01514 * 13 11 9 43 43 H 1.08998 * 117.49635 * 0.02562 * 13 11 9 44 44 H 1.09006 * 109.47239 * 60.00347 * 15 14 11 45 45 H 1.09003 * 109.47772 * 180.02562 * 15 14 11 46 46 H 1.09003 * 109.47511 * 300.00361 * 15 14 11 47 47 H 1.09000 * 109.47007 * 60.00019 * 16 14 11 48 48 H 1.09009 * 109.47029 * 179.97438 * 16 14 11 49 49 H 1.08992 * 109.47014 * 299.99759 * 16 14 11 50 50 H 1.00899 * 110.99709 * 322.37611 * 17 4 2 51 51 H 1.08999 * 109.47162 * 294.60288 * 18 17 4 52 52 H 1.09001 * 109.46959 * 54.59775 * 18 17 4 53 53 H 0.97003 * 119.99088 * 359.97438 * 21 19 18 54 54 H 0.96998 * 120.00221 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0401 -0.7213 1.2492 5 1 3.1255 -0.6362 1.3001 6 6 1.4196 -0.0849 2.4945 7 6 2.0234 -0.7223 3.7475 8 7 1.4297 -0.1126 4.9401 9 6 1.8128 -0.5193 6.1666 10 8 2.6493 -1.3897 6.2831 11 6 1.2017 0.1075 7.3933 12 1 0.1547 0.3965 7.3015 13 6 2.1042 0.9863 8.2617 14 6 1.6779 -0.3978 8.7566 15 6 0.6485 -0.4577 9.8868 16 6 2.7386 -1.5005 8.7702 17 7 1.6625 -2.1395 1.1842 18 6 2.6627 -2.9170 0.4405 19 6 2.3123 -4.3811 0.5076 20 8 1.3261 -4.7414 1.1149 21 7 3.0946 -5.2902 -0.1070 22 6 2.7762 -6.6222 -0.0455 23 1 1.8980 -6.9431 0.4953 24 6 3.5825 -7.5594 -0.6797 25 7 4.6507 -7.1690 -1.3381 26 14 3.1489 -9.3745 -0.5952 27 1 1.8075 -9.5914 -1.1942 28 1 4.1595 -10.1603 -1.3477 29 1 3.1347 -9.8144 0.8230 30 1 -0.3634 0.4465 -0.9255 31 1 -0.3633 -1.0249 0.0761 32 1 -0.3632 0.5783 0.8496 33 1 1.8933 -0.5139 -0.8900 34 1 3.1300 1.4424 -0.0005 35 1 1.6767 1.9564 -0.8900 36 1 1.6767 1.9563 0.8900 37 1 0.3419 -0.2479 2.4873 38 1 1.6252 0.9855 2.4964 39 1 3.1012 -0.5594 3.7548 40 1 1.8178 -1.7928 3.7458 41 1 0.7610 0.5838 4.8469 42 1 1.6510 1.8538 8.7414 43 1 3.1398 1.1114 7.9456 44 1 -0.1661 -1.1235 9.6015 45 1 1.1246 -0.8332 10.7926 46 1 0.2534 0.5412 10.0719 47 1 3.6369 -1.1467 8.2643 48 1 2.9806 -1.7592 9.8011 49 1 2.3542 -2.3807 8.2550 50 1 0.7445 -2.2511 0.7806 51 1 2.6739 -2.5935 -0.6003 52 1 3.6471 -2.7584 0.8808 53 1 3.8831 -5.0020 -0.5930 54 1 5.2134 -7.8232 -1.7811 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001717718614.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:54:46 Heat of formation + Delta-G solvation = -93.010012 kcal Electronic energy + Delta-G solvation = -29791.683466 eV Core-core repulsion = 25762.406653 eV Total energy + Delta-G solvation = -4029.276813 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 339.231 amu Computer time = 2.63 seconds Orbital eigenvalues (eV) -41.22428 -40.37339 -39.29639 -38.19082 -36.05279 -35.84661 -34.28882 -33.24698 -31.94674 -30.24525 -28.58976 -28.34528 -27.98198 -26.65870 -25.37056 -24.27099 -23.05858 -21.52932 -21.12256 -20.27427 -19.98822 -19.85040 -18.13713 -17.67685 -17.05149 -16.77379 -16.69168 -16.38755 -16.05604 -15.82626 -15.66916 -15.29853 -15.22774 -15.04238 -14.71749 -14.48448 -14.33100 -14.06092 -13.80261 -13.58433 -13.47962 -13.42769 -13.33000 -13.06900 -12.92373 -12.88336 -12.69345 -12.67043 -12.59077 -12.45202 -12.14452 -12.12335 -11.92093 -11.89248 -11.58399 -11.51932 -11.38142 -11.16012 -10.86062 -10.44875 -10.34402 -10.03030 -10.01147 -9.20680 -8.48003 -5.96900 1.37778 1.39159 1.50442 1.55131 2.04564 2.21916 2.27671 2.80969 2.93254 3.18879 3.54925 3.66133 3.72593 3.80137 3.87420 3.93417 4.11912 4.18197 4.20537 4.27128 4.29767 4.34321 4.41279 4.49443 4.56044 4.67658 4.72252 4.78598 4.80997 4.82129 4.84995 4.87673 4.99276 5.03721 5.06374 5.09540 5.10469 5.11846 5.18146 5.25864 5.28305 5.32234 5.38537 5.43321 5.49190 5.51276 5.58636 5.91200 6.13910 6.47160 6.59097 6.64587 7.11213 7.35891 7.55016 8.10971 8.69286 Molecular weight = 339.23amu Principal moments of inertia in cm(-1) A = 0.008569 B = 0.002491 C = 0.002020 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3266.630096 B =11235.530954 C =13855.655067 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.122 4.122 3 C -0.140 4.140 4 C 0.094 3.906 5 H 0.079 0.921 6 C -0.103 4.103 7 C 0.130 3.870 8 N -0.713 5.713 9 C 0.526 3.474 10 O -0.582 6.582 11 C -0.191 4.191 12 H 0.150 0.850 13 C -0.128 4.128 14 C -0.110 4.110 15 C -0.111 4.111 16 C -0.101 4.101 17 N -0.676 5.676 18 C 0.067 3.933 19 C 0.438 3.562 20 O -0.622 6.622 21 N -0.575 5.575 22 C -0.334 4.334 23 H 0.077 0.923 24 C -0.014 4.014 25 N -0.921 5.921 26 Si 0.993 3.007 27 H -0.270 1.270 28 H -0.268 1.268 29 H -0.274 1.274 30 H 0.061 0.939 31 H 0.039 0.961 32 H 0.074 0.926 33 H 0.058 0.942 34 H 0.055 0.945 35 H 0.059 0.941 36 H 0.072 0.928 37 H 0.078 0.922 38 H 0.102 0.898 39 H 0.047 0.953 40 H 0.041 0.959 41 H 0.415 0.585 42 H 0.136 0.864 43 H 0.086 0.914 44 H 0.058 0.942 45 H 0.068 0.932 46 H 0.080 0.920 47 H 0.043 0.957 48 H 0.063 0.937 49 H 0.037 0.963 50 H 0.345 0.655 51 H 0.066 0.934 52 H 0.097 0.903 53 H 0.396 0.604 54 H 0.278 0.722 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.828 25.595 12.268 29.193 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.142 4.142 3 C -0.198 4.198 4 C -0.016 4.016 5 H 0.097 0.903 6 C -0.141 4.141 7 C 0.006 3.994 8 N -0.365 5.365 9 C 0.314 3.686 10 O -0.463 6.463 11 C -0.212 4.212 12 H 0.167 0.833 13 C -0.165 4.165 14 C -0.110 4.110 15 C -0.168 4.168 16 C -0.158 4.158 17 N -0.309 5.309 18 C -0.066 4.066 19 C 0.225 3.775 20 O -0.509 6.509 21 N -0.213 5.213 22 C -0.464 4.464 23 H 0.095 0.905 24 C -0.213 4.213 25 N -0.562 5.562 26 Si 0.816 3.184 27 H -0.195 1.195 28 H -0.193 1.193 29 H -0.200 1.200 30 H 0.080 0.920 31 H 0.058 0.942 32 H 0.093 0.907 33 H 0.077 0.923 34 H 0.074 0.926 35 H 0.078 0.922 36 H 0.091 0.909 37 H 0.096 0.904 38 H 0.120 0.880 39 H 0.065 0.935 40 H 0.060 0.940 41 H 0.252 0.748 42 H 0.154 0.846 43 H 0.104 0.896 44 H 0.077 0.923 45 H 0.087 0.913 46 H 0.099 0.901 47 H 0.062 0.938 48 H 0.082 0.918 49 H 0.056 0.944 50 H 0.166 0.834 51 H 0.084 0.916 52 H 0.115 0.885 53 H 0.230 0.770 54 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -6.476 24.462 13.230 28.554 hybrid contribution 0.075 -0.894 -1.651 1.879 sum -6.401 23.568 11.579 27.028 Atomic orbital electron populations 1.21897 0.94610 1.01301 1.02851 1.21736 0.96858 0.98017 0.97568 1.21814 1.01019 0.94213 1.02762 1.21681 0.99977 0.85607 0.94343 0.90307 1.21761 1.01075 1.00242 0.91027 1.21141 0.96747 0.97330 0.84166 1.45887 1.44270 1.41400 1.04950 1.20383 0.81355 0.81728 0.85135 1.90732 1.35204 1.33202 1.87125 1.22436 1.01813 1.07426 0.89515 0.83267 1.23291 0.99056 0.94284 0.99864 1.21690 0.99687 0.96183 0.93478 1.21391 0.96668 1.03221 0.95536 1.21256 0.97042 0.97164 1.00311 1.60201 1.04975 1.08545 1.57172 1.21517 0.97508 0.89370 0.98205 1.20954 0.84875 0.89149 0.82515 1.90486 1.30643 1.82257 1.47484 1.41942 1.25586 1.06148 1.47575 1.19614 1.10815 0.83162 1.32814 0.90508 1.26049 0.95183 1.04498 0.95608 1.69666 1.15245 1.37010 1.34232 0.84997 0.78249 0.76655 0.78483 1.19514 1.19270 1.19954 0.92013 0.94150 0.90667 0.92348 0.92618 0.92184 0.90928 0.90363 0.88007 0.93496 0.94014 0.74802 0.84636 0.89559 0.92300 0.91273 0.90088 0.93816 0.91849 0.94386 0.83436 0.91644 0.88468 0.77046 0.91276 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.50 8.44 71.98 0.61 -1.89 16 2 C -0.12 -2.15 2.79 -10.79 -0.03 -2.18 16 3 C -0.14 -1.81 8.96 71.98 0.65 -1.16 16 4 C 0.09 2.04 1.80 44.91 0.08 2.12 16 5 H 0.08 1.73 7.69 -2.39 -0.02 1.72 16 6 C -0.10 -1.84 4.20 30.59 0.13 -1.71 16 7 C 0.13 3.28 5.56 86.38 0.48 3.76 16 8 N -0.71 -14.61 5.56 -463.04 -2.57 -17.18 16 9 C 0.53 13.45 7.59 87.66 0.67 14.12 16 10 O -0.58 -20.96 13.10 -3.05 -0.04 -21.00 16 11 C -0.19 -3.23 5.91 -11.54 -0.07 -3.30 16 12 H 0.15 1.63 8.14 -2.38 -0.02 1.61 16 13 C -0.13 -1.73 9.53 30.61 0.29 -1.44 16 14 C -0.11 -1.93 2.70 -52.17 -0.14 -2.07 16 15 C -0.11 -1.34 9.85 71.98 0.71 -0.63 16 16 C -0.10 -2.43 8.09 71.98 0.58 -1.84 16 17 N -0.68 -21.25 5.24 -495.61 -2.60 -23.85 16 18 C 0.07 2.37 5.99 85.55 0.51 2.89 16 19 C 0.44 21.80 7.83 87.65 0.69 22.49 16 20 O -0.62 -36.06 15.89 -3.08 -0.05 -36.11 16 21 N -0.58 -30.83 5.29 -306.99 -1.62 -32.45 16 22 C -0.33 -19.75 9.68 84.04 0.81 -18.94 16 23 H 0.08 4.83 7.16 -2.91 -0.02 4.81 16 24 C -0.01 -0.76 5.50 84.93 0.47 -0.29 16 25 N -0.92 -51.16 13.05 21.66 0.28 -50.88 16 26 Si 0.99 44.43 29.55 68.60 2.03 46.46 16 27 H -0.27 -11.85 7.11 99.48 0.71 -11.14 16 28 H -0.27 -11.23 7.11 99.48 0.71 -10.52 16 29 H -0.27 -12.25 7.11 99.48 0.71 -11.54 16 30 H 0.06 0.94 8.14 -2.39 -0.02 0.92 16 31 H 0.04 0.84 6.31 -2.39 -0.02 0.82 16 32 H 0.07 1.01 6.71 -2.39 -0.02 0.99 16 33 H 0.06 1.20 7.53 -2.38 -0.02 1.18 16 34 H 0.05 0.73 8.14 -2.39 -0.02 0.71 16 35 H 0.06 0.72 8.14 -2.39 -0.02 0.70 16 36 H 0.07 0.73 6.48 -2.38 -0.02 0.71 16 37 H 0.08 1.36 6.74 -2.39 -0.02 1.34 16 38 H 0.10 1.20 6.37 -2.39 -0.02 1.18 16 39 H 0.05 1.29 8.14 -2.38 -0.02 1.27 16 40 H 0.04 1.46 7.75 -2.39 -0.02 1.45 16 41 H 0.42 5.11 8.47 -92.71 -0.79 4.33 16 42 H 0.14 0.95 8.05 -2.39 -0.02 0.94 16 43 H 0.09 1.41 8.05 -2.39 -0.02 1.39 16 44 H 0.06 0.75 8.14 -2.38 -0.02 0.73 16 45 H 0.07 0.78 7.93 -2.39 -0.02 0.76 16 46 H 0.08 0.61 7.90 -2.39 -0.02 0.59 16 47 H 0.04 1.20 7.02 -2.39 -0.02 1.18 16 48 H 0.06 1.26 7.93 -2.38 -0.02 1.24 16 49 H 0.04 1.13 7.26 -2.39 -0.02 1.12 16 50 H 0.34 11.23 6.41 -89.70 -0.58 10.66 16 51 H 0.07 2.05 7.56 -2.39 -0.02 2.03 16 52 H 0.10 3.25 7.92 -2.39 -0.02 3.23 16 53 H 0.40 20.12 7.90 -92.71 -0.73 19.39 16 54 H 0.28 14.45 8.31 -92.71 -0.77 13.68 16 Total: -1.00 -78.31 425.73 0.68 -77.63 By element: Atomic # 1 Polarization: 48.64 SS G_CDS: -1.18 Total: 47.46 kcal Atomic # 6 Polarization: 3.48 SS G_CDS: 6.43 Total: 9.92 kcal Atomic # 7 Polarization: -117.85 SS G_CDS: -6.51 Total: -124.36 kcal Atomic # 8 Polarization: -57.02 SS G_CDS: -0.09 Total: -57.10 kcal Atomic # 14 Polarization: 44.43 SS G_CDS: 2.03 Total: 46.46 kcal Total: -78.31 0.68 -77.63 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001717718614.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.382 kcal (2) G-P(sol) polarization free energy of solvation -78.311 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -93.693 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.683 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.628 kcal (6) G-S(sol) free energy of system = (1) + (5) -93.010 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.64 seconds