Wall clock time and date at job start Sat Apr 11 2020 05:49:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52998 * 109.47026 * 2 1 4 4 H 1.08992 * 109.49886 * 304.56168 * 3 2 1 5 5 C 1.53200 * 109.49738 * 64.66377 * 3 2 1 6 6 N 1.46918 * 108.77537 * 174.58449 * 5 3 2 7 7 C 1.34771 * 120.63223 * 126.36523 * 6 5 3 8 8 C 1.50703 * 120.00595 * 184.91440 * 7 6 5 9 9 O 1.21280 * 120.00261 * 4.91683 * 7 6 5 10 10 C 1.46923 * 118.73882 * 306.38627 * 6 5 3 11 11 C 1.53197 * 108.77690 * 53.61393 * 10 6 5 12 12 C 1.53039 * 109.30771 * 305.36269 * 11 10 6 13 13 H 1.08999 * 109.45674 * 301.35045 * 12 11 10 14 14 N 1.46900 * 109.45897 * 181.38589 * 12 11 10 15 15 C 1.46900 * 111.00211 * 80.30572 * 14 12 11 16 16 C 1.50695 * 109.47201 * 179.97438 * 15 14 12 17 17 O 1.21280 * 120.00521 * 359.97438 * 16 15 14 18 18 N 1.34777 * 119.99838 * 179.97438 * 16 15 14 19 19 C 1.46502 * 120.00003 * 359.97438 * 18 16 15 20 20 C 1.52995 * 109.47075 * 269.99733 * 19 18 16 21 21 C 1.46503 * 119.99940 * 180.02562 * 18 16 15 22 22 C 1.50703 * 109.47046 * 269.99905 * 21 18 16 23 23 H 1.07993 * 119.99988 * 0.02562 * 22 21 18 24 24 C 1.37883 * 119.99779 * 180.02562 * 22 21 18 25 25 N 1.31511 * 120.00115 * 359.97438 * 24 22 21 26 26 Si 1.86794 * 119.99824 * 180.02562 * 24 22 21 27 27 H 1.48503 * 109.47221 * 359.97438 * 26 24 22 28 28 H 1.48499 * 109.47488 * 119.99921 * 26 24 22 29 29 H 1.48503 * 109.46996 * 239.99801 * 26 24 22 30 30 H 1.09001 * 109.46990 * 59.99965 * 1 2 3 31 31 H 1.09001 * 109.47213 * 180.02562 * 1 2 3 32 32 H 1.09002 * 109.47257 * 299.99665 * 1 2 3 33 33 H 1.08994 * 109.46688 * 240.00137 * 2 1 3 34 34 H 1.09001 * 109.46990 * 120.00035 * 2 1 3 35 35 H 1.09002 * 109.58154 * 294.36942 * 5 3 2 36 36 H 1.08999 * 109.58588 * 54.79096 * 5 3 2 37 37 H 1.09001 * 109.46450 * 354.68663 * 8 7 6 38 38 H 1.08994 * 109.47396 * 114.67894 * 8 7 6 39 39 H 1.09002 * 109.47525 * 234.69166 * 8 7 6 40 40 H 1.08998 * 109.58867 * 173.39297 * 10 6 5 41 41 H 1.09001 * 109.58859 * 293.82333 * 10 6 5 42 42 H 1.08994 * 109.49836 * 185.41543 * 11 10 6 43 43 H 1.09001 * 109.49967 * 65.31097 * 11 10 6 44 44 H 1.00906 * 110.99964 * 204.25541 * 14 12 11 45 45 H 1.09000 * 109.46697 * 59.99906 * 15 14 12 46 46 H 1.09001 * 109.47091 * 300.00172 * 15 14 12 47 47 H 1.09001 * 109.46717 * 149.99855 * 19 18 16 48 48 H 1.08997 * 109.47229 * 30.00167 * 19 18 16 49 49 H 1.08997 * 109.47446 * 300.00300 * 20 19 18 50 50 H 1.09001 * 109.47103 * 180.02562 * 20 19 18 51 51 H 1.09006 * 109.46878 * 60.00171 * 20 19 18 52 52 H 1.09002 * 109.47113 * 29.99792 * 21 18 16 53 53 H 1.08994 * 109.47107 * 149.99936 * 21 18 16 54 54 H 0.96999 * 120.00162 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6117 1.9798 -0.8461 5 6 1.6278 2.1306 1.3052 6 7 2.2340 3.4682 1.3466 7 6 1.4729 4.5610 1.5536 8 6 2.0904 5.9339 1.4833 9 8 0.2909 4.4396 1.7966 10 6 3.6857 3.5920 1.1574 11 6 4.0750 2.8877 -0.1462 12 6 3.5663 1.4447 -0.1131 13 1 3.9947 0.9283 0.7459 14 7 3.9665 0.7562 -1.3475 15 6 5.3641 0.3102 -1.2721 16 6 5.7375 -0.3905 -2.5529 17 8 4.9199 -0.5073 -3.4410 18 7 6.9803 -0.8874 -2.7116 19 6 7.9682 -0.7459 -1.6391 20 6 8.7428 0.5599 -1.8283 21 6 7.3435 -1.5681 -3.9570 22 6 7.0436 -3.0396 -3.8311 23 1 6.6240 -3.4288 -2.9152 24 6 7.3050 -3.8891 -4.8852 25 7 7.8155 -3.4151 -6.0007 26 14 6.9326 -5.7129 -4.7295 27 1 6.3669 -5.9895 -3.3845 28 1 5.9506 -6.1084 -5.7709 29 1 8.1847 -6.4909 -4.9089 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3634 -1.0277 0.0005 32 1 -0.3634 0.5138 0.8900 33 1 1.8933 -0.5138 -0.8900 34 1 1.8933 -0.5138 0.8900 35 1 0.5421 2.2200 1.3440 36 1 1.9787 1.5439 2.1542 37 1 3.1682 5.8410 1.3503 38 1 1.6662 6.4804 0.6411 39 1 1.8836 6.4732 2.4078 40 1 3.9580 4.6458 1.0985 41 1 4.2045 3.1246 1.9943 42 1 5.1600 2.8886 -0.2502 43 1 3.6275 3.4119 -0.9906 44 1 3.3502 -0.0177 -1.5460 45 1 5.4812 -0.3776 -0.4346 46 1 6.0137 1.1734 -1.1270 47 1 8.6609 -1.5870 -1.6699 48 1 7.4588 -0.7299 -0.6756 49 1 9.2522 0.5439 -2.7918 50 1 9.4781 0.6650 -1.0306 51 1 8.0500 1.4010 -1.7975 52 1 6.7669 -1.1491 -4.7816 53 1 8.4072 -1.4293 -4.1500 54 1 7.9990 -4.0127 -6.7424 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000614201489.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:49:16 Heat of formation + Delta-G solvation = -96.163041 kcal Electronic energy + Delta-G solvation = -30918.684715 eV Core-core repulsion = 26889.271176 eV Total energy + Delta-G solvation = -4029.413539 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 339.231 amu Computer time = 1.17 seconds Orbital eigenvalues (eV) -41.42486 -40.66152 -39.24426 -36.96098 -36.24029 -35.36602 -34.84791 -32.22798 -31.55305 -31.39140 -29.91366 -29.16255 -27.35644 -25.37424 -25.06257 -24.44807 -23.67753 -22.26349 -21.23930 -20.15275 -19.78817 -18.62716 -18.32165 -17.76531 -17.41020 -17.07246 -16.85091 -16.45069 -16.32540 -15.77447 -15.46471 -15.30559 -14.94820 -14.73445 -14.66079 -14.50620 -14.42342 -14.20798 -14.09727 -13.63305 -13.50669 -13.38709 -13.33637 -13.21025 -13.03000 -13.01393 -12.90347 -12.68492 -12.59857 -12.48731 -12.44361 -12.14259 -11.94586 -11.83876 -11.69066 -11.63967 -11.62162 -11.22208 -10.77052 -10.65313 -10.51821 -9.68064 -9.40711 -9.33281 -8.22316 -6.37113 1.35216 1.37786 1.49154 1.60761 1.90027 2.05709 2.27125 2.42521 3.06989 3.18211 3.54250 3.67332 3.76147 3.81561 3.88694 4.12816 4.13125 4.18505 4.29825 4.32827 4.39260 4.40184 4.44384 4.50119 4.53101 4.56711 4.65077 4.68564 4.70645 4.76627 4.81490 4.88161 4.96659 4.97001 5.02893 5.03113 5.08391 5.15971 5.20570 5.22873 5.24781 5.33265 5.40635 5.43445 5.54314 5.59262 5.87319 6.04804 6.07901 6.33482 6.43526 6.71892 6.86956 7.16229 7.29477 7.55850 8.84776 Molecular weight = 339.23amu Principal moments of inertia in cm(-1) A = 0.016461 B = 0.002492 C = 0.002253 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1700.531996 B =11233.264616 C =12422.165860 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.121 4.121 3 C -0.091 4.091 4 H 0.060 0.940 5 C 0.121 3.879 6 N -0.611 5.611 7 C 0.503 3.497 8 C -0.174 4.174 9 O -0.604 6.604 10 C 0.102 3.898 11 C -0.124 4.124 12 C 0.095 3.905 13 H 0.062 0.938 14 N -0.688 5.688 15 C 0.060 3.940 16 C 0.492 3.508 17 O -0.589 6.589 18 N -0.605 5.605 19 C 0.099 3.901 20 C -0.161 4.161 21 C 0.263 3.737 22 C -0.538 4.538 23 H 0.053 0.947 24 C 0.005 3.995 25 N -0.929 5.929 26 Si 0.967 3.033 27 H -0.266 1.266 28 H -0.283 1.283 29 H -0.269 1.269 30 H 0.045 0.955 31 H 0.060 0.940 32 H 0.060 0.940 33 H 0.055 0.945 34 H 0.077 0.923 35 H 0.076 0.924 36 H 0.082 0.918 37 H 0.112 0.888 38 H 0.098 0.902 39 H 0.102 0.898 40 H 0.121 0.879 41 H 0.092 0.908 42 H 0.093 0.907 43 H 0.058 0.942 44 H 0.343 0.657 45 H 0.078 0.922 46 H 0.124 0.876 47 H 0.069 0.931 48 H 0.102 0.898 49 H 0.034 0.966 50 H 0.096 0.904 51 H 0.063 0.937 52 H -0.007 1.007 53 H 0.020 0.980 54 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.901 16.027 21.632 27.204 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.160 4.160 3 C -0.111 4.111 4 H 0.079 0.921 5 C -0.003 4.003 6 N -0.343 5.343 7 C 0.294 3.706 8 C -0.232 4.232 9 O -0.486 6.486 10 C -0.019 4.019 11 C -0.162 4.162 12 C -0.014 4.014 13 H 0.080 0.920 14 N -0.323 5.323 15 C -0.072 4.072 16 C 0.281 3.719 17 O -0.470 6.470 18 N -0.337 5.337 19 C -0.023 4.023 20 C -0.219 4.219 21 C 0.141 3.859 22 C -0.577 4.577 23 H 0.071 0.929 24 C -0.193 4.193 25 N -0.569 5.569 26 Si 0.792 3.208 27 H -0.190 1.190 28 H -0.209 1.209 29 H -0.194 1.194 30 H 0.064 0.936 31 H 0.079 0.921 32 H 0.079 0.921 33 H 0.074 0.926 34 H 0.096 0.904 35 H 0.094 0.906 36 H 0.100 0.900 37 H 0.130 0.870 38 H 0.117 0.883 39 H 0.121 0.879 40 H 0.139 0.861 41 H 0.110 0.890 42 H 0.111 0.889 43 H 0.077 0.923 44 H 0.165 0.835 45 H 0.095 0.905 46 H 0.142 0.858 47 H 0.087 0.913 48 H 0.120 0.880 49 H 0.053 0.947 50 H 0.115 0.885 51 H 0.082 0.918 52 H 0.011 0.989 53 H 0.038 0.962 54 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -4.679 16.427 20.794 26.910 hybrid contribution -0.339 -2.035 -0.485 2.119 sum -5.018 14.393 20.309 25.392 Atomic orbital electron populations 1.21770 0.95211 1.02054 1.01756 1.21570 0.96687 0.95435 1.02277 1.21538 0.95156 0.96472 0.97912 0.92102 1.21597 0.99188 0.82629 0.96856 1.48344 1.09342 1.06310 1.70351 1.21597 0.86056 0.88317 0.74640 1.22075 1.03956 0.91305 1.05904 1.90683 1.18631 1.87902 1.51394 1.22200 0.78167 1.03932 0.97645 1.21964 1.02372 0.94124 0.97765 1.21595 0.93993 0.95596 0.90200 0.91980 1.60232 1.02144 1.33603 1.36327 1.21849 0.92359 1.00155 0.92819 1.21352 0.81614 0.78816 0.90122 1.90645 1.50613 1.60119 1.45579 1.48288 1.11995 1.55256 1.18149 1.21753 0.91499 0.99087 0.89936 1.22155 1.00747 0.96637 1.02328 1.18661 0.94224 0.90962 0.82058 1.21728 1.42055 0.93697 1.00210 0.92864 1.25873 0.94801 1.04012 0.94651 1.70061 1.44819 1.37170 1.04886 0.85375 0.78149 0.79067 0.78250 1.18993 1.20940 1.19430 0.93572 0.92087 0.92061 0.92603 0.90434 0.90560 0.89987 0.87001 0.88309 0.87929 0.86085 0.88958 0.88897 0.92302 0.83482 0.90462 0.85837 0.91260 0.87999 0.94658 0.88498 0.91821 0.98893 0.96174 0.92468 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.77 9.67 71.98 0.70 -2.07 16 2 C -0.12 -2.26 5.23 30.59 0.16 -2.10 16 3 C -0.09 -1.68 2.05 -10.71 -0.02 -1.70 16 4 H 0.06 1.43 8.14 -2.39 -0.02 1.41 16 5 C 0.12 2.06 5.30 86.37 0.46 2.52 16 6 N -0.61 -9.31 2.97 -818.91 -2.43 -11.74 16 7 C 0.50 9.41 7.80 87.66 0.68 10.09 16 8 C -0.17 -1.58 10.12 71.24 0.72 -0.86 16 9 O -0.60 -17.37 16.53 -3.03 -0.05 -17.42 16 10 C 0.10 0.85 6.36 86.36 0.55 1.40 16 11 C -0.12 -1.62 5.54 30.67 0.17 -1.45 16 12 C 0.10 1.63 1.95 44.94 0.09 1.72 16 13 H 0.06 0.87 7.88 -2.39 -0.02 0.85 16 14 N -0.69 -17.57 5.92 -495.44 -2.93 -20.51 16 15 C 0.06 1.51 4.52 85.56 0.39 1.90 16 16 C 0.49 19.80 7.71 87.66 0.68 20.47 16 17 O -0.59 -30.55 15.78 -3.03 -0.05 -30.60 16 18 N -0.60 -24.83 2.46 -826.16 -2.03 -26.86 16 19 C 0.10 2.80 5.93 86.38 0.51 3.31 16 20 C -0.16 -3.58 10.24 71.98 0.74 -2.84 16 21 C 0.26 14.18 5.16 85.63 0.44 14.62 16 22 C -0.54 -30.97 9.39 25.60 0.24 -30.73 16 23 H 0.05 3.02 7.81 -2.91 -0.02 3.00 16 24 C 0.01 0.31 5.46 84.66 0.46 0.77 16 25 N -0.93 -56.63 13.29 21.45 0.28 -56.35 16 26 Si 0.97 44.97 29.54 68.60 2.03 47.00 16 27 H -0.27 -11.89 7.11 99.48 0.71 -11.18 16 28 H -0.28 -13.15 7.11 99.48 0.71 -12.44 16 29 H -0.27 -11.83 7.11 99.48 0.71 -11.12 16 30 H 0.05 0.93 8.14 -2.39 -0.02 0.91 16 31 H 0.06 1.05 8.14 -2.39 -0.02 1.03 16 32 H 0.06 1.05 6.69 -2.39 -0.02 1.04 16 33 H 0.06 1.26 6.01 -2.39 -0.01 1.25 16 34 H 0.08 1.22 8.14 -2.39 -0.02 1.20 16 35 H 0.08 1.65 5.75 -2.39 -0.01 1.63 16 36 H 0.08 1.15 8.14 -2.39 -0.02 1.13 16 37 H 0.11 0.34 5.10 -2.39 -0.01 0.32 16 38 H 0.10 0.88 8.14 -2.39 -0.02 0.86 16 39 H 0.10 0.78 8.14 -2.39 -0.02 0.76 16 40 H 0.12 0.39 5.04 -2.39 -0.01 0.38 16 41 H 0.09 0.47 8.14 -2.39 -0.02 0.45 16 42 H 0.09 0.97 7.14 -2.39 -0.02 0.96 16 43 H 0.06 1.03 8.14 -2.39 -0.02 1.01 16 44 H 0.34 10.10 5.78 -89.69 -0.52 9.58 16 45 H 0.08 1.59 7.33 -2.39 -0.02 1.57 16 46 H 0.12 2.39 6.16 -2.39 -0.01 2.38 16 47 H 0.07 2.13 8.07 -2.39 -0.02 2.11 16 48 H 0.10 2.07 6.44 -2.39 -0.02 2.06 16 49 H 0.03 0.97 8.14 -2.39 -0.02 0.95 16 50 H 0.10 1.47 8.14 -2.39 -0.02 1.45 16 51 H 0.06 1.27 7.22 -2.38 -0.02 1.25 16 52 H -0.01 -0.45 7.42 -2.39 -0.02 -0.46 16 53 H 0.02 1.11 8.07 -2.39 -0.02 1.09 16 54 H 0.27 15.18 8.31 -92.71 -0.77 14.41 16 Total: -1.00 -83.73 416.00 2.15 -81.58 By element: Atomic # 1 Polarization: 19.46 SS G_CDS: 0.37 Total: 19.83 kcal Atomic # 6 Polarization: 8.10 SS G_CDS: 6.96 Total: 15.06 kcal Atomic # 7 Polarization: -108.34 SS G_CDS: -7.11 Total: -115.45 kcal Atomic # 8 Polarization: -47.92 SS G_CDS: -0.10 Total: -48.02 kcal Atomic # 14 Polarization: 44.97 SS G_CDS: 2.03 Total: 47.00 kcal Total: -83.73 2.15 -81.58 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000614201489.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.579 kcal (2) G-P(sol) polarization free energy of solvation -83.729 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -98.308 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.145 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.584 kcal (6) G-S(sol) free energy of system = (1) + (5) -96.163 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.17 seconds