Wall clock time and date at job start Sat Apr 11 2020 05:49:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53005 * 109.46889 * 2 1 4 4 N 1.46900 * 109.47258 * 239.99997 * 2 1 3 5 5 C 1.46895 * 111.00211 * 59.99879 * 4 2 1 6 6 C 1.50694 * 109.47271 * 180.02562 * 5 4 2 7 7 O 1.21280 * 119.99995 * 0.02562 * 6 5 4 8 8 N 1.34781 * 120.00254 * 179.97438 * 6 5 4 9 9 C 1.46495 * 120.00223 * 179.97438 * 8 6 5 10 10 C 1.50701 * 109.47439 * 180.02562 * 9 8 6 11 11 H 1.08000 * 119.99839 * 0.02562 * 10 9 8 12 12 C 1.37875 * 120.00362 * 179.97438 * 10 9 8 13 13 N 1.31518 * 119.99977 * 0.02562 * 12 10 9 14 14 Si 1.86793 * 120.00079 * 179.97438 * 12 10 9 15 15 H 1.48500 * 109.47331 * 0.02562 * 14 12 10 16 16 H 1.48501 * 109.47330 * 120.00613 * 14 12 10 17 17 H 1.48500 * 109.47421 * 240.00829 * 14 12 10 18 18 C 1.50696 * 109.47140 * 119.99763 * 2 1 3 19 19 O 1.21284 * 120.00000 * 265.00293 * 18 2 1 20 20 N 1.34772 * 120.00364 * 85.00147 * 18 2 1 21 21 C 1.46494 * 120.00365 * 179.97438 * 20 18 2 22 22 C 1.53002 * 109.47345 * 179.97438 * 21 20 18 23 23 C 1.52997 * 109.46817 * 65.00126 * 22 21 20 24 24 C 1.52999 * 109.47317 * 179.97438 * 23 22 21 25 25 C 1.53005 * 109.47159 * 300.00546 * 24 23 22 26 26 C 1.52997 * 109.47452 * 59.99536 * 25 24 23 27 27 C 1.53000 * 109.47233 * 184.99932 * 22 21 20 28 28 H 1.08994 * 109.47140 * 299.99968 * 1 2 3 29 29 H 1.09001 * 109.46857 * 60.00184 * 1 2 3 30 30 H 1.09000 * 109.47018 * 180.02562 * 1 2 3 31 31 H 1.08999 * 109.46790 * 180.02562 * 3 2 1 32 32 H 1.09005 * 109.46809 * 299.99861 * 3 2 1 33 33 H 1.09001 * 109.47511 * 59.99774 * 3 2 1 34 34 H 1.00899 * 110.99421 * 296.04319 * 4 2 1 35 35 H 1.09001 * 109.47199 * 300.00158 * 5 4 2 36 36 H 1.09003 * 109.47276 * 59.99514 * 5 4 2 37 37 H 0.97000 * 119.99706 * 0.02562 * 8 6 5 38 38 H 1.09004 * 109.47485 * 300.00174 * 9 8 6 39 39 H 1.08995 * 109.47221 * 60.00213 * 9 8 6 40 40 H 0.96993 * 119.99668 * 179.97438 * 13 12 10 41 41 H 0.97008 * 119.99832 * 0.02562 * 20 18 2 42 42 H 1.09008 * 109.47020 * 60.00160 * 21 20 18 43 43 H 1.08997 * 109.47417 * 300.00155 * 21 20 18 44 44 H 1.09002 * 109.47070 * 305.00306 * 22 21 20 45 45 H 1.08996 * 109.47853 * 300.00202 * 23 22 21 46 46 H 1.09002 * 109.47153 * 60.00231 * 23 22 21 47 47 H 1.09000 * 109.47486 * 180.02562 * 24 23 22 48 48 H 1.09002 * 109.46716 * 60.00091 * 24 23 22 49 49 H 1.09002 * 109.46935 * 299.99411 * 25 24 23 50 50 H 1.09001 * 109.46812 * 179.97438 * 25 24 23 51 51 H 1.08993 * 109.47194 * 179.97438 * 26 25 24 52 52 H 1.09002 * 109.46695 * 59.99734 * 26 25 24 53 53 H 1.08992 * 109.47399 * 300.00166 * 27 22 21 54 54 H 1.09004 * 109.46724 * 60.00652 * 27 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 7 2.0197 -0.6925 -1.1994 5 6 1.5487 -0.0265 -2.4211 6 6 2.0694 -0.7638 -3.6278 7 8 2.7640 -1.7475 -3.4843 8 7 1.7622 -0.3305 -4.8666 9 6 2.2688 -1.0470 -6.0397 10 6 1.7856 -0.3638 -7.2930 11 1 1.1636 0.5164 -7.2227 12 6 2.1382 -0.8617 -8.5294 13 7 2.8960 -1.9332 -8.6151 14 14 1.5386 -0.0152 -10.0828 15 1 0.7072 1.1596 -9.7170 16 1 2.7056 0.4348 -10.8834 17 1 0.7266 -0.9667 -10.8832 18 6 2.0323 -0.7103 1.2305 19 8 2.3207 -0.0747 2.2223 20 7 2.1611 -2.0519 1.2288 21 6 2.6500 -2.7424 2.4247 22 6 2.7008 -4.2483 2.1593 23 6 3.7368 -4.5398 1.0718 24 6 3.7881 -6.0457 0.8067 25 6 4.1790 -6.7769 2.0927 26 6 3.1430 -6.4855 3.1802 27 6 3.0914 -4.9800 3.4450 28 1 -0.3633 0.5138 0.8899 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 -1.0277 0.0005 31 1 3.1300 1.4425 -0.0005 32 1 1.6766 1.9563 -0.8901 33 1 1.6766 1.9565 0.8899 34 1 1.7503 -1.6648 -1.1908 35 1 0.4589 -0.0266 -2.4379 36 1 1.9121 1.0011 -2.4379 37 1 1.2064 0.4561 -4.9813 38 1 3.3587 -1.0464 -6.0232 39 1 1.9058 -2.0746 -6.0226 40 1 3.1438 -2.2836 -9.4849 41 1 1.9308 -2.5603 0.4353 42 1 1.9777 -2.5434 3.2595 43 1 3.6492 -2.3823 2.6693 44 1 1.7206 -4.5923 1.8289 45 1 3.4586 -4.0186 0.1558 46 1 4.7169 -4.1958 1.4022 47 1 4.5265 -6.2534 0.0323 48 1 2.8080 -6.3901 0.4766 49 1 5.1590 -6.4326 2.4229 50 1 4.2151 -7.8498 1.9039 51 1 3.4212 -7.0067 4.0961 52 1 2.1629 -6.8298 2.8499 53 1 4.0715 -4.6360 3.7753 54 1 2.3533 -4.7723 4.2197 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000767669658.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:49:25 Heat of formation + Delta-G solvation = -129.037991 kcal Electronic energy + Delta-G solvation = -30149.921318 eV Core-core repulsion = 26119.082214 eV Total energy + Delta-G solvation = -4030.839104 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 339.231 amu Computer time = 1.10 seconds Orbital eigenvalues (eV) -41.50271 -40.41599 -39.59185 -37.80214 -36.07146 -35.90322 -34.31796 -32.44708 -32.11848 -31.59449 -29.65198 -28.35423 -27.69573 -26.64665 -24.59604 -23.72705 -23.20178 -22.12258 -21.37895 -20.80437 -20.19932 -19.43607 -18.38624 -17.40283 -17.17312 -16.95126 -16.72538 -16.53770 -16.23462 -16.04539 -15.55191 -15.28186 -15.17383 -15.04610 -14.96263 -14.68541 -14.44985 -14.22216 -14.00145 -13.84527 -13.68055 -13.44961 -13.14953 -13.04763 -13.03710 -12.92479 -12.76556 -12.75799 -12.71431 -12.45356 -12.24311 -12.20576 -12.01961 -11.94134 -11.43675 -11.36643 -11.15435 -10.95568 -10.83261 -10.79908 -10.66000 -10.11788 -9.79740 -9.51951 -8.27933 -6.43850 1.44424 1.45132 1.50718 1.58507 1.82291 2.14510 2.29008 2.47993 3.07398 3.13973 3.60251 3.62840 3.75184 3.82787 3.84830 3.95317 4.04951 4.20492 4.30148 4.30386 4.36112 4.43173 4.51057 4.54580 4.62566 4.63158 4.68357 4.70004 4.76997 4.81657 4.84342 4.91180 5.00603 5.12217 5.14417 5.17044 5.22135 5.25498 5.27027 5.27825 5.27939 5.38870 5.40336 5.45342 5.51523 5.58270 5.66319 5.78554 5.87647 6.10638 6.46992 6.68259 6.97119 7.14256 7.25844 7.55259 8.84369 Molecular weight = 339.23amu Principal moments of inertia in cm(-1) A = 0.011223 B = 0.002315 C = 0.001964 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2494.219854 B =12093.592799 C =14251.281037 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C 0.100 3.900 3 C -0.129 4.129 4 N -0.670 5.670 5 C 0.050 3.950 6 C 0.494 3.506 7 O -0.589 6.589 8 N -0.708 5.708 9 C 0.268 3.732 10 C -0.553 4.553 11 H 0.085 0.915 12 C 0.002 3.998 13 N -0.931 5.931 14 Si 0.983 3.017 15 H -0.252 1.252 16 H -0.281 1.281 17 H -0.280 1.280 18 C 0.530 3.470 19 O -0.575 6.575 20 N -0.715 5.715 21 C 0.125 3.875 22 C -0.088 4.088 23 C -0.116 4.116 24 C -0.121 4.121 25 C -0.120 4.120 26 C -0.115 4.115 27 C -0.109 4.109 28 H 0.074 0.926 29 H 0.092 0.908 30 H 0.067 0.933 31 H 0.048 0.952 32 H 0.086 0.914 33 H 0.071 0.929 34 H 0.346 0.654 35 H 0.098 0.902 36 H 0.125 0.875 37 H 0.409 0.591 38 H -0.016 1.016 39 H -0.011 1.011 40 H 0.268 0.732 41 H 0.407 0.593 42 H 0.069 0.931 43 H 0.053 0.947 44 H 0.084 0.916 45 H 0.053 0.947 46 H 0.056 0.944 47 H 0.054 0.946 48 H 0.064 0.936 49 H 0.058 0.942 50 H 0.065 0.935 51 H 0.072 0.928 52 H 0.065 0.935 53 H 0.062 0.938 54 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.399 -1.942 23.832 24.752 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.236 4.236 2 C 0.006 3.994 3 C -0.187 4.187 4 N -0.305 5.305 5 C -0.081 4.081 6 C 0.281 3.719 7 O -0.470 6.470 8 N -0.359 5.359 9 C 0.145 3.855 10 C -0.591 4.591 11 H 0.103 0.897 12 C -0.197 4.197 13 N -0.570 5.570 14 Si 0.806 3.194 15 H -0.175 1.175 16 H -0.207 1.207 17 H -0.205 1.205 18 C 0.316 3.684 19 O -0.454 6.454 20 N -0.367 5.367 21 C 0.001 3.999 22 C -0.106 4.106 23 C -0.154 4.154 24 C -0.158 4.158 25 C -0.157 4.157 26 C -0.153 4.153 27 C -0.147 4.147 28 H 0.093 0.907 29 H 0.110 0.890 30 H 0.086 0.914 31 H 0.067 0.933 32 H 0.105 0.895 33 H 0.090 0.910 34 H 0.167 0.833 35 H 0.116 0.884 36 H 0.143 0.857 37 H 0.245 0.755 38 H 0.002 0.998 39 H 0.007 0.993 40 H 0.077 0.923 41 H 0.243 0.757 42 H 0.087 0.913 43 H 0.072 0.928 44 H 0.102 0.898 45 H 0.072 0.928 46 H 0.074 0.926 47 H 0.073 0.927 48 H 0.083 0.917 49 H 0.077 0.923 50 H 0.084 0.916 51 H 0.091 0.909 52 H 0.084 0.916 53 H 0.081 0.919 54 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -5.002 -2.007 24.532 25.117 hybrid contribution -0.801 -0.266 -1.499 1.720 sum -5.803 -2.273 23.033 23.861 Atomic orbital electron populations 1.22513 0.92515 1.03772 1.04843 1.21169 0.95473 0.95788 0.86961 1.21748 1.01343 0.92146 1.03454 1.60308 1.63998 1.06354 0.99873 1.21914 1.00547 0.99587 0.86066 1.21330 0.80328 0.84836 0.85435 1.90649 1.40207 1.29215 1.86931 1.46152 1.52409 1.31815 1.05532 1.18500 0.92583 0.91385 0.83064 1.21667 1.33060 1.13653 0.90699 0.89706 1.26052 0.94753 0.95509 1.03393 1.70142 1.36985 1.23795 1.26096 0.85138 0.78076 0.78617 0.77553 1.17530 1.20703 1.20529 1.20633 0.76384 0.82434 0.88959 1.90670 1.51591 1.66859 1.36315 1.46057 1.66442 1.06840 1.17331 1.21448 0.99169 0.92019 0.87220 1.21340 1.00097 0.92342 0.96860 1.21585 0.99013 0.96585 0.98186 1.21530 1.01700 0.94770 0.97844 1.21550 0.99104 1.00096 0.94977 1.21495 0.99464 0.95470 0.98841 1.21483 1.02067 0.95246 0.95898 0.90741 0.88963 0.91351 0.93275 0.89506 0.90969 0.83318 0.88401 0.85685 0.75549 0.99767 0.99340 0.92337 0.75670 0.91312 0.92822 0.89755 0.92807 0.92567 0.92710 0.91740 0.92276 0.91579 0.90948 0.91646 0.91898 0.90751 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.57 8.21 71.98 0.59 -1.97 16 2 C 0.10 2.00 0.91 2.78 0.00 2.00 16 3 C -0.13 -2.57 7.77 71.98 0.56 -2.01 16 4 N -0.67 -15.70 5.63 -477.88 -2.69 -18.39 16 5 C 0.05 1.15 5.38 85.56 0.46 1.61 16 6 C 0.49 18.06 7.87 87.65 0.69 18.74 16 7 O -0.59 -27.34 16.20 -3.03 -0.05 -27.39 16 8 N -0.71 -27.91 5.55 -466.80 -2.59 -30.50 16 9 C 0.27 14.25 5.43 85.63 0.46 14.71 16 10 C -0.55 -29.26 9.28 25.60 0.24 -29.02 16 11 H 0.08 4.03 7.60 -2.91 -0.02 4.00 16 12 C 0.00 0.13 5.46 84.65 0.46 0.59 16 13 N -0.93 -55.52 13.29 21.45 0.28 -55.23 16 14 Si 0.98 41.57 29.54 68.60 2.03 43.59 16 15 H -0.25 -9.77 7.11 99.48 0.71 -9.06 16 16 H -0.28 -11.79 7.11 99.48 0.71 -11.09 16 17 H -0.28 -11.64 7.11 99.48 0.71 -10.93 16 18 C 0.53 12.79 6.71 87.66 0.59 13.38 16 19 O -0.58 -17.66 16.10 -3.04 -0.05 -17.71 16 20 N -0.71 -14.33 5.18 -463.07 -2.40 -16.73 16 21 C 0.12 2.28 5.06 86.38 0.44 2.72 16 22 C -0.09 -1.27 2.23 -10.79 -0.02 -1.30 16 23 C -0.12 -2.07 5.08 30.59 0.16 -1.91 16 24 C -0.12 -2.01 5.92 30.60 0.18 -1.83 16 25 C -0.12 -1.63 5.92 30.60 0.18 -1.45 16 26 C -0.12 -1.32 5.92 30.58 0.18 -1.14 16 27 C -0.11 -1.33 5.20 30.58 0.16 -1.17 16 28 H 0.07 1.07 8.14 -2.39 -0.02 1.05 16 29 H 0.09 1.05 6.40 -2.39 -0.02 1.03 16 30 H 0.07 0.90 8.14 -2.39 -0.02 0.89 16 31 H 0.05 1.17 8.14 -2.39 -0.02 1.15 16 32 H 0.09 1.32 6.40 -2.38 -0.02 1.31 16 33 H 0.07 1.42 7.87 -2.39 -0.02 1.40 16 34 H 0.35 8.10 6.73 -89.69 -0.60 7.49 16 35 H 0.10 1.62 6.30 -2.39 -0.02 1.60 16 36 H 0.13 2.42 6.30 -2.39 -0.02 2.41 16 37 H 0.41 12.91 8.32 -92.71 -0.77 12.14 16 38 H -0.02 -0.95 8.14 -2.39 -0.02 -0.97 16 39 H -0.01 -0.68 8.14 -2.39 -0.02 -0.70 16 40 H 0.27 14.89 8.31 -92.71 -0.77 14.12 16 41 H 0.41 7.31 5.93 -92.70 -0.55 6.76 16 42 H 0.07 1.24 8.14 -2.38 -0.02 1.22 16 43 H 0.05 1.15 8.14 -2.39 -0.02 1.13 16 44 H 0.08 1.13 8.14 -2.39 -0.02 1.11 16 45 H 0.05 1.12 7.18 -2.39 -0.02 1.10 16 46 H 0.06 1.09 8.14 -2.39 -0.02 1.07 16 47 H 0.05 1.01 8.14 -2.39 -0.02 0.99 16 48 H 0.06 1.04 8.14 -2.39 -0.02 1.02 16 49 H 0.06 0.83 8.14 -2.39 -0.02 0.81 16 50 H 0.07 0.83 8.14 -2.39 -0.02 0.81 16 51 H 0.07 0.70 8.14 -2.39 -0.02 0.68 16 52 H 0.06 0.72 8.14 -2.39 -0.02 0.70 16 53 H 0.06 0.82 8.14 -2.39 -0.02 0.80 16 54 H 0.07 0.78 8.14 -2.39 -0.02 0.76 16 Total: -1.00 -74.46 420.91 -1.16 -75.62 By element: Atomic # 1 Polarization: 35.81 SS G_CDS: -1.02 Total: 34.79 kcal Atomic # 6 Polarization: 6.63 SS G_CDS: 5.33 Total: 11.96 kcal Atomic # 7 Polarization: -113.46 SS G_CDS: -7.39 Total: -120.85 kcal Atomic # 8 Polarization: -45.01 SS G_CDS: -0.10 Total: -45.11 kcal Atomic # 14 Polarization: 41.57 SS G_CDS: 2.03 Total: 43.59 kcal Total: -74.46 -1.16 -75.62 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000767669658.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -53.421 kcal (2) G-P(sol) polarization free energy of solvation -74.455 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -127.876 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.162 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.617 kcal (6) G-S(sol) free energy of system = (1) + (5) -129.038 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.10 seconds