Wall clock time and date at job start Sat Apr 11 2020 05:49:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52989 * 1 3 3 C 1.53003 * 109.47456 * 2 1 4 4 C 1.53004 * 109.47427 * 240.00094 * 2 1 3 5 5 O 1.45200 * 109.47410 * 119.99780 * 2 1 3 6 6 C 1.34643 * 116.99473 * 59.99898 * 5 2 1 7 7 O 1.21503 * 120.00216 * 0.02562 * 6 5 2 8 8 N 1.34781 * 119.99796 * 179.97438 * 6 5 2 9 9 C 1.47580 * 134.49338 * 179.97438 * 8 6 5 10 10 C 1.53946 * 86.24073 * 204.69863 * 9 8 6 11 11 C 1.52998 * 113.74188 * 221.88494 * 10 9 8 12 12 N 1.46900 * 109.47116 * 185.00584 * 11 10 9 13 13 C 1.46958 * 110.99763 * 293.79609 * 12 11 10 14 14 C 1.53049 * 109.36783 * 176.81227 * 13 12 11 15 15 N 1.46961 * 109.36162 * 58.40385 * 14 13 12 16 16 C 1.46900 * 110.99990 * 176.81725 * 15 14 13 17 17 C 1.50704 * 109.46768 * 293.79756 * 16 15 14 18 18 H 1.08005 * 119.99834 * 359.97438 * 17 16 15 19 19 C 1.37875 * 120.00108 * 179.97438 * 17 16 15 20 20 N 1.31511 * 119.99813 * 0.02562 * 19 17 16 21 21 Si 1.86806 * 120.00100 * 179.97438 * 19 17 16 22 22 H 1.48493 * 109.46812 * 60.00284 * 21 19 17 23 23 H 1.48491 * 109.46890 * 180.02562 * 21 19 17 24 24 H 1.48499 * 109.46947 * 300.00055 * 21 19 17 25 25 C 1.46958 * 110.87802 * 300.68022 * 15 14 13 26 26 C 1.46956 * 111.00272 * 169.99951 * 12 11 10 27 27 C 1.47927 * 134.63065 * 0.08998 * 8 6 5 28 28 H 1.09003 * 109.47325 * 300.00329 * 1 2 3 29 29 H 1.09001 * 109.47083 * 60.00252 * 1 2 3 30 30 H 1.09001 * 109.47344 * 180.02562 * 1 2 3 31 31 H 1.08994 * 109.47317 * 179.97438 * 3 2 1 32 32 H 1.09001 * 109.46768 * 299.99940 * 3 2 1 33 33 H 1.09003 * 109.47122 * 59.99546 * 3 2 1 34 34 H 1.09001 * 109.46702 * 300.00201 * 4 2 1 35 35 H 1.08991 * 109.47156 * 59.99645 * 4 2 1 36 36 H 1.08994 * 109.47336 * 180.02562 * 4 2 1 37 37 H 1.09002 * 113.76914 * 90.34174 * 9 8 6 38 38 H 1.09000 * 113.77064 * 319.05647 * 9 8 6 39 39 H 1.09005 * 113.73852 * 90.68768 * 10 9 8 40 40 H 1.09005 * 109.46881 * 304.99667 * 11 10 9 41 41 H 1.09000 * 109.47393 * 65.00069 * 11 10 9 42 42 H 1.09006 * 109.49003 * 296.78299 * 13 12 11 43 43 H 1.09003 * 109.48961 * 56.84599 * 13 12 11 44 44 H 1.09002 * 109.48723 * 298.43809 * 14 13 12 45 45 H 1.08997 * 109.48845 * 178.36699 * 14 13 12 46 46 H 1.09003 * 109.47492 * 53.79158 * 16 15 14 47 47 H 1.08998 * 109.47043 * 173.79820 * 16 15 14 48 48 H 0.97008 * 120.00138 * 179.97438 * 20 19 17 49 49 H 1.09006 * 109.49003 * 299.35274 * 25 15 14 50 50 H 1.08998 * 109.50544 * 179.30180 * 25 15 14 51 51 H 1.08995 * 109.48569 * 303.15612 * 26 12 11 52 52 H 1.09010 * 109.48846 * 63.21632 * 26 12 11 53 53 H 1.09004 * 113.77332 * 40.99310 * 27 8 6 54 54 H 1.08998 * 113.87432 * 269.61195 * 27 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7212 -1.2493 5 8 2.0140 -0.6844 1.1856 6 6 1.6521 -1.9723 1.3383 7 8 0.9515 -2.5096 0.5036 8 7 2.0680 -2.6657 2.4166 9 6 1.8726 -4.0478 2.8960 10 6 2.1474 -3.4903 4.3045 11 6 3.0442 -4.3888 5.1584 12 7 3.1470 -3.8318 6.5138 13 6 3.8566 -2.5449 6.5019 14 6 3.8727 -1.9612 7.9166 15 7 4.5259 -2.9110 8.8282 16 6 4.6286 -2.3540 10.1837 17 6 5.5642 -1.1726 10.1716 18 1 6.0356 -0.8665 9.2493 19 6 5.8183 -0.4825 11.3379 20 7 5.2447 -0.8556 12.4609 21 14 6.9786 0.9814 11.3230 22 1 6.4543 2.0191 10.3992 23 1 7.0824 1.5446 12.6931 24 1 8.3217 0.5439 10.8651 25 6 3.8163 -4.1978 8.8401 26 6 3.8000 -4.7816 7.4255 27 6 2.9015 -2.3499 3.5973 28 1 -0.3634 0.5139 0.8900 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3634 -1.0277 0.0005 31 1 3.1299 1.4425 0.0005 32 1 1.6767 1.9563 -0.8900 33 1 1.6766 1.9564 0.8900 34 1 1.6766 -1.7489 -1.2492 35 1 1.6767 -0.2075 -2.1392 36 1 3.1299 -0.7216 -1.2490 37 1 2.6317 -4.7463 2.5442 38 1 0.8570 -4.4200 2.7613 39 1 1.2500 -3.1632 4.8297 40 1 2.6142 -5.3891 5.2084 41 1 4.0368 -4.4419 4.7111 42 1 4.8802 -2.6972 6.1596 43 1 3.3469 -1.8548 5.8296 44 1 2.8498 -1.7835 8.2484 45 1 4.4237 -1.0207 7.9156 46 1 3.6428 -2.0333 10.5204 47 1 5.0141 -3.1158 10.8612 48 1 5.4237 -0.3703 13.2816 49 1 2.7926 -4.0455 9.1824 50 1 4.3256 -4.8881 9.5125 51 1 3.2491 -5.7221 7.4263 52 1 4.8231 -4.9593 7.0937 53 1 2.7068 -1.3650 4.0218 54 1 3.9635 -2.5485 3.4534 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000800366639.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:49:36 Heat of formation + Delta-G solvation = -52.884588 kcal Electronic energy + Delta-G solvation = -30347.965781 eV Core-core repulsion = 26320.428936 eV Total energy + Delta-G solvation = -4027.536844 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 339.231 amu Computer time = 1.05 seconds Orbital eigenvalues (eV) -41.93315 -40.72369 -39.63287 -37.68961 -36.47382 -35.06350 -34.52720 -31.98384 -31.56617 -29.67998 -28.38628 -28.32430 -27.50029 -27.31687 -25.31884 -24.37993 -23.31872 -22.67305 -21.15141 -20.65497 -20.16318 -18.80549 -18.46384 -17.74518 -17.63934 -17.17707 -16.57377 -16.38550 -16.07619 -15.78274 -15.71318 -15.41726 -15.26378 -15.04269 -15.02375 -14.64323 -14.32067 -14.00045 -13.74288 -13.54869 -13.37187 -13.32079 -13.11495 -13.08152 -12.91249 -12.88806 -12.77001 -12.71042 -12.54893 -12.40917 -12.28123 -12.26494 -12.08317 -12.06258 -11.86700 -11.59337 -11.41543 -11.37637 -11.12745 -11.02290 -10.60073 -9.86025 -9.24035 -8.98361 -8.19354 -6.29781 0.97748 1.41988 1.45233 1.53043 1.72591 2.41147 2.70850 2.90678 3.12861 3.35416 3.40546 3.72855 3.77799 3.92313 3.94763 3.95074 4.09786 4.21858 4.26477 4.32398 4.44281 4.47104 4.51043 4.54339 4.55845 4.59147 4.59435 4.65366 4.73497 4.73975 4.77553 4.81130 4.85132 4.91852 4.92322 4.95339 5.04725 5.08095 5.09980 5.14035 5.25200 5.26700 5.30209 5.31228 5.34746 5.47466 5.65105 6.04290 6.12012 6.19456 6.39637 6.57494 6.66515 6.86331 7.21771 7.40008 8.91600 Molecular weight = 339.23amu Principal moments of inertia in cm(-1) A = 0.012990 B = 0.002226 C = 0.001952 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2155.053740 B =12576.368762 C =14344.316061 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C 0.122 3.878 3 C -0.136 4.136 4 C -0.177 4.177 5 O -0.372 6.372 6 C 0.664 3.336 7 O -0.597 6.597 8 N -0.641 5.641 9 C 0.140 3.860 10 C -0.101 4.101 11 C 0.070 3.930 12 N -0.548 5.548 13 C 0.068 3.932 14 C 0.066 3.934 15 N -0.544 5.544 16 C 0.208 3.792 17 C -0.523 4.523 18 H 0.064 0.936 19 C 0.000 4.000 20 N -0.935 5.935 21 Si 0.970 3.030 22 H -0.266 1.266 23 H -0.284 1.284 24 H -0.268 1.268 25 C 0.052 3.948 26 C 0.073 3.927 27 C 0.106 3.894 28 H 0.058 0.942 29 H 0.092 0.908 30 H 0.061 0.939 31 H 0.067 0.933 32 H 0.104 0.896 33 H 0.065 0.935 34 H 0.061 0.939 35 H 0.092 0.908 36 H 0.060 0.940 37 H 0.109 0.891 38 H 0.088 0.912 39 H 0.106 0.894 40 H 0.102 0.898 41 H 0.051 0.949 42 H 0.040 0.960 43 H 0.094 0.906 44 H 0.013 0.987 45 H 0.065 0.935 46 H -0.042 1.042 47 H 0.003 0.997 48 H 0.264 0.736 49 H 0.019 0.981 50 H 0.068 0.932 51 H 0.102 0.898 52 H 0.041 0.959 53 H 0.083 0.917 54 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.047 -3.346 -26.294 27.427 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.235 4.235 2 C 0.086 3.914 3 C -0.193 4.193 4 C -0.234 4.234 5 O -0.286 6.286 6 C 0.421 3.579 7 O -0.489 6.489 8 N -0.383 5.383 9 C 0.019 3.981 10 C -0.121 4.121 11 C -0.058 4.058 12 N -0.273 5.273 13 C -0.060 4.060 14 C -0.062 4.062 15 N -0.269 5.269 16 C 0.082 3.918 17 C -0.561 4.561 18 H 0.082 0.918 19 C -0.198 4.198 20 N -0.576 5.576 21 Si 0.794 3.206 22 H -0.191 1.191 23 H -0.210 1.210 24 H -0.193 1.193 25 C -0.077 4.077 26 C -0.055 4.055 27 C -0.016 4.016 28 H 0.077 0.923 29 H 0.111 0.889 30 H 0.080 0.920 31 H 0.086 0.914 32 H 0.123 0.877 33 H 0.084 0.916 34 H 0.080 0.920 35 H 0.111 0.889 36 H 0.079 0.921 37 H 0.127 0.873 38 H 0.107 0.893 39 H 0.124 0.876 40 H 0.120 0.880 41 H 0.070 0.930 42 H 0.059 0.941 43 H 0.112 0.888 44 H 0.031 0.969 45 H 0.083 0.917 46 H -0.025 1.025 47 H 0.021 0.979 48 H 0.073 0.927 49 H 0.037 0.963 50 H 0.087 0.913 51 H 0.120 0.880 52 H 0.059 0.941 53 H 0.101 0.899 54 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges -7.343 -3.284 -26.599 27.789 hybrid contribution 0.375 0.799 0.741 1.152 sum -6.969 -2.485 -25.858 26.896 Atomic orbital electron populations 1.22462 0.93949 1.03596 1.03534 1.22439 0.94665 0.92696 0.81617 1.21889 1.02363 0.90822 1.04271 1.22449 1.01521 1.02142 0.97293 1.86338 1.71440 1.23370 1.47489 1.17778 0.78837 0.80698 0.80567 1.90866 1.43220 1.71326 1.43476 1.49012 1.53314 1.15094 1.20925 1.23379 1.03729 0.81881 0.89101 1.23023 1.00004 0.95430 0.93618 1.22061 0.98520 0.98562 0.86655 1.62126 1.52068 1.03753 1.09323 1.22181 0.96868 0.91669 0.95243 1.22002 0.95500 0.95896 0.92823 1.62228 1.50610 1.03959 1.10113 1.19343 0.93431 0.93899 0.85139 1.21424 1.26724 1.13030 0.94898 0.91799 1.25939 0.98026 1.00848 0.94978 1.70087 1.45190 1.42335 0.99968 0.85432 0.79167 0.78821 0.77186 1.19101 1.20978 1.19259 1.22192 0.95685 0.91832 0.97999 1.22057 0.97734 0.95293 0.90438 1.23726 0.96271 1.00646 0.80932 0.92316 0.88880 0.91976 0.91362 0.87725 0.91562 0.91996 0.88888 0.92108 0.87339 0.89334 0.87582 0.87953 0.93049 0.94144 0.88793 0.96921 0.91650 1.02470 0.97917 0.92716 0.96281 0.91316 0.88005 0.94067 0.89889 0.88172 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -3.20 8.37 71.98 0.60 -2.60 16 2 C 0.12 2.24 1.13 -10.79 -0.01 2.23 16 3 C -0.14 -1.74 8.85 71.98 0.64 -1.10 16 4 C -0.18 -3.06 8.37 71.98 0.60 -2.45 16 5 O -0.37 -8.85 9.88 -55.52 -0.55 -9.40 16 6 C 0.66 16.95 8.23 129.79 1.07 18.02 16 7 O -0.60 -17.55 12.61 19.83 0.25 -17.30 16 8 N -0.64 -13.09 3.62 -963.61 -3.49 -16.58 16 9 C 0.14 1.98 8.39 86.48 0.73 2.71 16 10 C -0.10 -1.47 3.61 -10.15 -0.04 -1.50 16 11 C 0.07 1.03 4.88 86.30 0.42 1.45 16 12 N -0.55 -12.66 4.71 -895.71 -4.22 -16.88 16 13 C 0.07 1.83 5.15 86.31 0.44 2.28 16 14 C 0.07 2.52 5.43 86.31 0.47 2.99 16 15 N -0.54 -23.38 4.70 -900.27 -4.23 -27.61 16 16 C 0.21 11.24 4.72 85.56 0.40 11.65 16 17 C -0.52 -29.62 8.47 25.60 0.22 -29.40 16 18 H 0.06 3.52 7.13 -2.91 -0.02 3.50 16 19 C 0.00 0.00 5.46 84.65 0.46 0.46 16 20 N -0.94 -56.64 13.29 21.45 0.28 -56.36 16 21 Si 0.97 44.08 29.54 68.60 2.03 46.10 16 22 H -0.27 -11.56 7.11 99.48 0.71 -10.86 16 23 H -0.28 -12.67 7.11 99.48 0.71 -11.96 16 24 H -0.27 -11.73 7.11 99.48 0.71 -11.02 16 25 C 0.05 1.80 5.61 86.31 0.48 2.29 16 26 C 0.07 1.82 5.61 86.31 0.48 2.30 16 27 C 0.11 1.74 6.73 86.41 0.58 2.32 16 28 H 0.06 1.05 8.14 -2.39 -0.02 1.03 16 29 H 0.09 1.18 8.14 -2.39 -0.02 1.16 16 30 H 0.06 1.45 5.88 -2.39 -0.01 1.44 16 31 H 0.07 0.86 8.14 -2.39 -0.02 0.84 16 32 H 0.10 0.81 8.14 -2.39 -0.02 0.79 16 33 H 0.07 0.87 8.14 -2.39 -0.02 0.85 16 34 H 0.06 1.41 5.88 -2.39 -0.01 1.39 16 35 H 0.09 1.13 8.14 -2.39 -0.02 1.11 16 36 H 0.06 1.01 8.14 -2.39 -0.02 0.99 16 37 H 0.11 1.12 8.10 -2.39 -0.02 1.10 16 38 H 0.09 1.25 8.14 -2.39 -0.02 1.23 16 39 H 0.11 1.79 8.14 -2.38 -0.02 1.78 16 40 H 0.10 1.15 8.03 -2.38 -0.02 1.13 16 41 H 0.05 0.69 7.82 -2.39 -0.02 0.67 16 42 H 0.04 1.09 8.14 -2.38 -0.02 1.07 16 43 H 0.09 2.11 5.29 -2.39 -0.01 2.10 16 44 H 0.01 0.51 8.14 -2.39 -0.02 0.49 16 45 H 0.07 2.70 6.79 -2.39 -0.02 2.69 16 46 H -0.04 -2.52 8.12 -2.39 -0.02 -2.54 16 47 H 0.00 0.16 8.03 -2.39 -0.02 0.14 16 48 H 0.26 15.06 8.31 -92.70 -0.77 14.29 16 49 H 0.02 0.71 8.14 -2.38 -0.02 0.69 16 50 H 0.07 2.40 8.07 -2.39 -0.02 2.38 16 51 H 0.10 1.96 8.07 -2.39 -0.02 1.94 16 52 H 0.04 1.04 8.14 -2.38 -0.02 1.02 16 53 H 0.08 1.46 7.40 -2.39 -0.02 1.45 16 54 H 0.10 1.43 7.90 -2.39 -0.02 1.41 16 Total: -1.00 -72.56 415.34 -1.52 -74.09 By element: Atomic # 1 Polarization: 11.44 SS G_CDS: 0.85 Total: 12.29 kcal Atomic # 6 Polarization: 4.08 SS G_CDS: 7.55 Total: 11.64 kcal Atomic # 7 Polarization: -105.77 SS G_CDS: -11.66 Total: -117.43 kcal Atomic # 8 Polarization: -26.40 SS G_CDS: -0.30 Total: -26.70 kcal Atomic # 14 Polarization: 44.08 SS G_CDS: 2.03 Total: 46.10 kcal Total: -72.56 -1.52 -74.09 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000800366639.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.205 kcal (2) G-P(sol) polarization free energy of solvation -72.565 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.360 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.525 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.090 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.885 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.05 seconds