Wall clock time and date at job start Sat Apr 11 2020 05:49:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52997 * 109.47129 * 2 1 4 4 C 1.50699 * 109.47141 * 120.00470 * 2 1 3 5 5 H 1.07998 * 119.99961 * 117.90954 * 4 2 1 6 6 C 1.37872 * 119.99847 * 297.90577 * 4 2 1 7 7 N 1.31510 * 120.00156 * 7.60223 * 6 4 2 8 8 Si 1.86800 * 120.00173 * 187.60304 * 6 4 2 9 9 H 1.48501 * 109.47094 * 265.12320 * 8 6 4 10 10 H 1.48507 * 109.47069 * 25.11589 * 8 6 4 11 11 H 1.48495 * 109.47573 * 145.12044 * 8 6 4 12 12 C 1.52998 * 109.46851 * 240.00582 * 2 1 3 13 13 N 1.46500 * 109.47748 * 59.99590 * 12 2 1 14 14 C 1.34777 * 120.00166 * 179.97438 * 13 12 2 15 15 O 1.21586 * 120.00176 * 0.02562 * 14 13 12 16 16 N 1.34773 * 119.99711 * 180.02562 * 14 13 12 17 17 C 1.46498 * 120.00252 * 180.02562 * 16 14 13 18 18 C 1.52997 * 109.47714 * 179.97438 * 17 16 14 19 19 H 1.09003 * 109.87033 * 58.98073 * 18 17 16 20 20 C 1.54261 * 109.88439 * 180.02562 * 18 17 16 21 21 C 1.54048 * 103.99563 * 121.86772 * 20 18 17 22 22 C 1.54215 * 102.94232 * 20.18132 * 21 20 18 23 23 O 1.43807 * 109.88003 * 297.81385 * 18 17 16 24 24 C 1.52208 * 110.65905 * 261.99699 * 21 20 18 25 25 C 1.53193 * 109.37228 * 292.25327 * 24 21 20 26 26 N 1.46862 * 109.41229 * 302.18374 * 25 24 21 27 27 C 1.46863 * 111.33271 * 62.36358 * 26 25 24 28 28 C 1.52210 * 110.66526 * 138.36262 * 21 20 18 29 29 H 1.08996 * 109.46836 * 305.78752 * 1 2 3 30 30 H 1.09002 * 109.47084 * 65.78533 * 1 2 3 31 31 H 1.08994 * 109.47141 * 185.78794 * 1 2 3 32 32 H 1.08999 * 109.47026 * 179.97438 * 3 2 1 33 33 H 1.09000 * 109.47568 * 300.00485 * 3 2 1 34 34 H 1.09001 * 109.46744 * 60.00355 * 3 2 1 35 35 H 0.97002 * 119.99976 * 180.02562 * 7 6 4 36 36 H 1.09002 * 109.47372 * 180.02562 * 12 2 1 37 37 H 1.09012 * 109.47291 * 299.99525 * 12 2 1 38 38 H 0.96997 * 119.99492 * 0.02562 * 13 12 2 39 39 H 0.97003 * 120.00222 * 0.02562 * 16 14 13 40 40 H 1.09000 * 109.46733 * 300.00754 * 17 16 14 41 41 H 1.09001 * 109.46841 * 59.99668 * 17 16 14 42 42 H 1.09002 * 110.52674 * 240.49330 * 20 18 17 43 43 H 1.08997 * 110.52356 * 3.23832 * 20 18 17 44 44 H 1.09007 * 110.62343 * 82.35711 * 22 21 20 45 45 H 1.09001 * 110.62112 * 205.21190 * 22 21 20 46 46 H 1.09001 * 109.49056 * 52.23163 * 24 21 20 47 47 H 1.09005 * 109.48749 * 172.28741 * 24 21 20 48 48 H 1.08998 * 109.48227 * 182.19792 * 25 24 21 49 49 H 1.09001 * 109.48828 * 62.16745 * 25 24 21 50 50 H 1.00906 * 110.99758 * 186.55421 * 26 25 24 51 51 H 1.08998 * 109.48122 * 177.64044 * 27 26 25 52 52 H 1.08990 * 109.49182 * 57.61168 * 27 26 25 53 53 H 1.08993 * 109.49202 * 187.70695 * 28 21 20 54 54 H 1.08998 * 109.48965 * 307.75344 * 28 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0324 -0.7105 1.2304 5 1 2.6251 -1.6079 1.1316 6 6 1.7353 -0.2149 2.4822 7 7 0.8931 0.7871 2.6099 8 14 2.5290 -0.9665 3.9969 9 1 1.6224 -1.9916 4.5737 10 1 3.8165 -1.6019 3.6174 11 1 2.7790 0.0960 5.0037 12 6 2.0400 -0.7211 -1.2493 13 7 1.5516 -0.0306 -2.4455 14 6 1.8776 -0.4907 -3.6696 15 8 2.5766 -1.4792 -3.7812 16 7 1.4287 0.1450 -4.7700 17 6 1.7825 -0.3554 -6.1006 18 6 1.1493 0.5401 -7.1674 19 1 1.5005 1.5649 -7.0470 20 6 1.5155 0.0209 -8.5731 21 6 0.1522 -0.2498 -9.2372 22 6 -0.8180 0.6026 -8.3943 23 8 -0.2838 0.4949 -7.0560 24 6 -0.2089 -1.7253 -9.1400 25 6 0.7527 -2.5420 -10.0090 26 7 0.6818 -2.0650 -11.3962 27 6 1.1068 -0.6632 -11.5015 28 6 0.1573 0.2195 -10.6851 29 1 -0.3633 0.6009 0.8336 30 1 -0.3633 0.4215 -0.9373 31 1 -0.3633 -1.0224 0.1036 32 1 3.1300 1.4424 0.0005 33 1 1.6767 1.9564 -0.8899 34 1 1.6767 1.9562 0.8900 35 1 0.6844 1.1360 3.4906 36 1 3.1300 -0.7216 -1.2492 37 1 1.6766 -1.7489 -1.2494 38 1 0.9942 0.7583 -2.3564 39 1 0.8713 0.9339 -4.6809 40 1 2.8664 -0.3472 -6.2154 41 1 1.4127 -1.3743 -6.2158 42 1 2.0673 0.7792 -9.1287 43 1 2.0953 -0.8993 -8.5015 44 1 -0.8084 1.6397 -8.7296 45 1 -1.8276 0.1944 -8.4412 46 1 -0.1286 -2.0518 -8.1032 47 1 -1.2304 -1.8735 -9.4902 48 1 0.4717 -3.5945 -9.9717 49 1 1.7699 -2.4238 -9.6356 50 1 1.2248 -2.6545 -12.0094 51 1 1.0826 -0.3535 -12.5463 52 1 2.1208 -0.5605 -11.1154 53 1 -0.8500 0.1461 -11.0947 54 1 0.4938 1.2553 -10.7304 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000891955518.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:49:52 Heat of formation + Delta-G solvation = -109.730545 kcal Electronic energy + Delta-G solvation = -30491.224470 eV Core-core repulsion = 26461.222599 eV Total energy + Delta-G solvation = -4030.001870 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 339.231 amu Computer time = 1.16 seconds Orbital eigenvalues (eV) -41.68476 -40.89872 -38.50592 -38.11783 -35.72394 -34.96778 -33.79711 -32.82870 -31.84860 -31.50065 -27.88903 -27.55778 -27.41444 -27.03008 -25.74272 -24.05469 -22.91535 -22.38600 -21.99905 -20.57703 -19.62167 -19.43850 -17.81208 -17.74892 -17.58719 -16.83442 -16.69686 -16.51269 -16.34110 -16.07030 -15.73368 -15.26477 -15.19138 -15.03273 -14.72839 -14.64408 -14.44000 -14.08268 -13.98065 -13.78330 -13.46935 -13.24111 -13.16078 -13.05241 -12.91016 -12.68301 -12.58492 -12.44934 -12.25119 -12.23231 -12.13136 -12.10740 -11.66135 -11.47176 -11.37053 -11.26532 -11.19570 -11.10906 -10.71685 -10.56249 -10.38706 -10.28994 -9.64553 -9.35285 -8.02227 -6.15826 1.42472 1.45667 1.54861 1.81025 2.21316 2.47075 2.82847 3.21485 3.28116 3.43194 3.44134 3.65990 3.75336 3.87455 4.10688 4.11571 4.27251 4.28258 4.39959 4.43183 4.53221 4.55078 4.58915 4.62847 4.69164 4.72533 4.74117 4.75938 4.86701 4.91860 4.97107 5.00979 5.02472 5.06937 5.11625 5.12418 5.20751 5.21854 5.28727 5.37145 5.39311 5.50978 5.64235 5.67335 5.69651 5.94123 6.07911 6.09496 6.14342 6.22401 6.44234 6.50020 6.87720 7.16699 7.50871 7.64294 8.97541 Molecular weight = 339.23amu Principal moments of inertia in cm(-1) A = 0.030922 B = 0.001869 C = 0.001829 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 905.288985 B =14981.220574 C =15306.662446 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.117 4.117 2 C 0.051 3.949 3 C -0.118 4.118 4 C -0.529 4.529 5 H 0.044 0.956 6 C 0.028 3.972 7 N -0.898 5.898 8 Si 0.945 3.055 9 H -0.281 1.281 10 H -0.275 1.275 11 H -0.281 1.281 12 C 0.168 3.832 13 N -0.726 5.726 14 C 0.696 3.304 15 O -0.644 6.644 16 N -0.730 5.730 17 C 0.144 3.856 18 C 0.074 3.926 19 H 0.090 0.910 20 C -0.135 4.135 21 C -0.085 4.085 22 C 0.053 3.947 23 O -0.389 6.389 24 C -0.100 4.100 25 C 0.058 3.942 26 N -0.698 5.698 27 C 0.056 3.944 28 C -0.098 4.098 29 H 0.064 0.936 30 H 0.033 0.967 31 H 0.014 0.986 32 H 0.020 0.980 33 H 0.038 0.962 34 H 0.058 0.942 35 H 0.260 0.740 36 H 0.037 0.963 37 H 0.033 0.967 38 H 0.405 0.595 39 H 0.410 0.590 40 H 0.074 0.926 41 H 0.051 0.949 42 H 0.099 0.901 43 H 0.077 0.923 44 H 0.078 0.922 45 H 0.093 0.907 46 H 0.055 0.945 47 H 0.068 0.932 48 H 0.075 0.925 49 H 0.031 0.969 50 H 0.350 0.650 51 H 0.085 0.915 52 H 0.033 0.967 53 H 0.071 0.929 54 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.409 3.247 -30.810 31.074 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C 0.050 3.950 3 C -0.175 4.175 4 C -0.567 4.567 5 H 0.063 0.937 6 C -0.172 4.172 7 N -0.536 5.536 8 Si 0.771 3.229 9 H -0.207 1.207 10 H -0.200 1.200 11 H -0.207 1.207 12 C 0.043 3.957 13 N -0.382 5.382 14 C 0.396 3.604 15 O -0.526 6.526 16 N -0.387 5.387 17 C 0.019 3.981 18 C 0.016 3.984 19 H 0.108 0.892 20 C -0.173 4.173 21 C -0.085 4.085 22 C -0.023 4.023 23 O -0.309 6.309 24 C -0.138 4.138 25 C -0.072 4.072 26 N -0.330 5.330 27 C -0.073 4.073 28 C -0.136 4.136 29 H 0.083 0.917 30 H 0.052 0.948 31 H 0.034 0.966 32 H 0.040 0.960 33 H 0.057 0.943 34 H 0.077 0.923 35 H 0.070 0.930 36 H 0.055 0.945 37 H 0.051 0.949 38 H 0.241 0.759 39 H 0.245 0.755 40 H 0.093 0.907 41 H 0.069 0.931 42 H 0.118 0.882 43 H 0.096 0.904 44 H 0.096 0.904 45 H 0.111 0.889 46 H 0.073 0.927 47 H 0.087 0.913 48 H 0.093 0.907 49 H 0.049 0.951 50 H 0.169 0.831 51 H 0.104 0.896 52 H 0.052 0.948 53 H 0.090 0.910 54 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges -2.638 2.606 -30.527 30.751 hybrid contribution 0.966 -0.142 1.340 1.658 sum -1.672 2.464 -29.187 29.339 Atomic orbital electron populations 1.21683 0.97133 0.99070 0.99597 1.18373 0.93240 0.93101 0.90270 1.21620 0.98052 0.97684 1.00192 1.21240 1.33266 1.10719 0.91510 0.93730 1.25461 0.95147 0.95672 1.00915 1.69947 1.33505 1.26610 1.23576 0.85755 0.78967 0.78151 0.79983 1.20672 1.20023 1.20674 1.21109 0.96727 0.94587 0.83234 1.45205 1.55809 1.33221 1.03925 1.16201 0.80233 0.82648 0.81366 1.90844 1.45280 1.29716 1.86779 1.44872 1.56444 1.33193 1.04163 1.21459 0.99385 0.97469 0.79745 1.23021 0.81814 0.99165 0.94386 0.89214 1.23004 0.97824 1.02851 0.93651 1.21488 0.94596 0.95919 0.96522 1.23682 0.97939 0.99773 0.80866 1.88938 1.18695 1.94961 1.28274 1.21376 0.99925 0.93594 0.98880 1.21935 0.97613 0.98997 0.88612 1.60242 1.61096 1.03970 1.07679 1.22005 0.96346 0.88192 1.00795 1.21427 1.00919 0.99227 0.91977 0.91720 0.94767 0.96644 0.96045 0.94324 0.92342 0.93043 0.94495 0.94888 0.75864 0.75464 0.90740 0.93054 0.88211 0.90417 0.90436 0.88873 0.92650 0.91334 0.90701 0.95105 0.83125 0.89632 0.94846 0.91031 0.89707 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.38 8.08 71.98 0.58 -4.80 16 2 C 0.05 2.42 0.50 -52.93 -0.03 2.39 16 3 C -0.12 -5.29 8.06 71.98 0.58 -4.71 16 4 C -0.53 -28.53 8.00 25.60 0.20 -28.33 16 5 H 0.04 2.46 7.76 -2.91 -0.02 2.44 16 6 C 0.03 1.50 5.11 84.65 0.43 1.93 16 7 N -0.90 -48.49 9.48 21.44 0.20 -48.28 16 8 Si 0.94 43.19 29.54 68.60 2.03 45.22 16 9 H -0.28 -12.69 7.11 99.48 0.71 -11.99 16 10 H -0.28 -12.57 7.11 99.48 0.71 -11.86 16 11 H -0.28 -12.54 7.11 99.48 0.71 -11.83 16 12 C 0.17 7.50 4.50 86.38 0.39 7.89 16 13 N -0.73 -26.73 4.91 -478.53 -2.35 -29.08 16 14 C 0.70 25.68 8.57 179.06 1.53 27.21 16 15 O -0.64 -29.22 16.34 -3.99 -0.07 -29.29 16 16 N -0.73 -19.77 5.48 -478.55 -2.62 -22.39 16 17 C 0.14 3.31 5.15 86.38 0.44 3.76 16 18 C 0.07 1.19 3.50 31.02 0.11 1.30 16 19 H 0.09 1.21 8.14 -2.39 -0.02 1.19 16 20 C -0.14 -1.62 4.84 31.38 0.15 -1.47 16 21 C -0.08 -1.00 0.58 -51.94 -0.03 -1.03 16 22 C 0.05 0.71 6.61 72.39 0.48 1.19 16 23 O -0.39 -7.48 11.04 -148.98 -1.64 -9.12 16 24 C -0.10 -1.46 4.81 30.40 0.15 -1.31 16 25 C 0.06 0.75 6.38 86.37 0.55 1.30 16 26 N -0.70 -7.66 6.82 -513.37 -3.50 -11.16 16 27 C 0.06 0.48 6.40 86.38 0.55 1.04 16 28 C -0.10 -0.85 4.75 30.40 0.14 -0.70 16 29 H 0.06 3.26 6.16 -2.39 -0.01 3.24 16 30 H 0.03 1.32 6.72 -2.39 -0.02 1.31 16 31 H 0.01 0.70 8.14 -2.39 -0.02 0.68 16 32 H 0.02 0.94 8.14 -2.39 -0.02 0.92 16 33 H 0.04 1.45 6.86 -2.39 -0.02 1.44 16 34 H 0.06 2.90 6.21 -2.39 -0.01 2.88 16 35 H 0.26 13.49 8.31 -92.71 -0.77 12.72 16 36 H 0.04 1.74 8.14 -2.39 -0.02 1.72 16 37 H 0.03 1.58 8.14 -2.38 -0.02 1.56 16 38 H 0.40 12.97 6.17 -92.71 -0.57 12.40 16 39 H 0.41 9.15 8.44 -92.71 -0.78 8.36 16 40 H 0.07 1.72 8.14 -2.39 -0.02 1.70 16 41 H 0.05 1.37 8.14 -2.39 -0.02 1.35 16 42 H 0.10 0.83 7.76 -2.39 -0.02 0.81 16 43 H 0.08 1.05 5.92 -2.39 -0.01 1.03 16 44 H 0.08 0.79 8.02 -2.38 -0.02 0.77 16 45 H 0.09 1.23 8.03 -2.39 -0.02 1.21 16 46 H 0.05 1.02 8.14 -2.39 -0.02 1.00 16 47 H 0.07 1.05 8.14 -2.38 -0.02 1.03 16 48 H 0.07 0.97 8.14 -2.39 -0.02 0.95 16 49 H 0.03 0.42 6.66 -2.39 -0.02 0.40 16 50 H 0.35 2.90 8.90 -89.69 -0.80 2.10 16 51 H 0.09 0.57 8.14 -2.39 -0.02 0.55 16 52 H 0.03 0.29 7.59 -2.39 -0.02 0.27 16 53 H 0.07 0.69 8.14 -2.39 -0.02 0.67 16 54 H 0.08 0.50 8.04 -2.39 -0.02 0.48 16 Total: -1.00 -65.97 406.03 -2.96 -68.93 By element: Atomic # 1 Polarization: 30.76 SS G_CDS: -1.24 Total: 29.52 kcal Atomic # 6 Polarization: -0.59 SS G_CDS: 6.24 Total: 5.66 kcal Atomic # 7 Polarization: -102.64 SS G_CDS: -8.27 Total: -110.92 kcal Atomic # 8 Polarization: -36.70 SS G_CDS: -1.71 Total: -38.41 kcal Atomic # 14 Polarization: 43.19 SS G_CDS: 2.03 Total: 45.22 kcal Total: -65.97 -2.96 -68.93 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000891955518.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -40.802 kcal (2) G-P(sol) polarization free energy of solvation -65.972 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -106.774 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.957 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.929 kcal (6) G-S(sol) free energy of system = (1) + (5) -109.731 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.16 seconds