Wall clock time and date at job start Sat Apr 11 2020 05:50:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53003 * 109.47085 * 2 1 4 4 C 1.50696 * 109.47664 * 120.00548 * 2 1 3 5 5 O 1.21283 * 119.99608 * 265.00166 * 4 2 1 6 6 N 1.34770 * 120.00069 * 84.99705 * 4 2 1 7 7 C 1.46505 * 119.99809 * 180.02562 * 6 4 2 8 8 H 1.08998 * 109.47262 * 324.99912 * 7 6 4 9 9 C 1.52998 * 109.46914 * 85.00401 * 7 6 4 10 10 C 1.53004 * 109.46870 * 179.97438 * 9 7 6 11 11 C 1.52997 * 109.47119 * 299.99896 * 10 9 7 12 12 C 1.52998 * 109.47165 * 60.00284 * 11 10 9 13 13 H 1.09009 * 109.46923 * 180.02562 * 12 11 10 14 14 N 1.46490 * 109.47539 * 59.99819 * 12 11 10 15 15 C 1.36935 * 120.00121 * 84.99635 * 14 12 11 16 16 H 1.07997 * 120.00139 * 0.02562 * 15 14 12 17 17 C 1.38816 * 120.00401 * 180.02562 * 15 14 12 18 18 N 1.31624 * 119.99569 * 0.02562 * 17 15 14 19 19 Si 1.86800 * 120.00172 * 180.02562 * 17 15 14 20 20 H 1.48508 * 109.46685 * 269.99637 * 19 17 15 21 21 H 1.48494 * 109.47357 * 29.99716 * 19 17 15 22 22 H 1.48502 * 109.47120 * 150.00435 * 19 17 15 23 23 C 1.53002 * 109.46752 * 299.99495 * 12 11 10 24 24 N 1.46900 * 109.46982 * 240.00528 * 2 1 3 25 25 C 1.47010 * 111.00137 * 183.62839 * 24 2 1 26 26 C 1.53101 * 109.25874 * 177.60522 * 25 24 2 27 27 O 1.43018 * 109.25573 * 56.85328 * 26 25 24 28 28 C 1.43014 * 113.73762 * 301.32664 * 27 26 25 29 29 C 1.47014 * 111.00066 * 59.99622 * 24 2 1 30 30 H 1.09003 * 109.46985 * 299.99207 * 1 2 3 31 31 H 1.08997 * 109.48061 * 59.99640 * 1 2 3 32 32 H 1.09007 * 109.46824 * 179.97438 * 1 2 3 33 33 H 1.08991 * 109.47173 * 180.02562 * 3 2 1 34 34 H 1.08997 * 109.46964 * 300.01031 * 3 2 1 35 35 H 1.09003 * 109.46561 * 60.00534 * 3 2 1 36 36 H 0.97001 * 120.00242 * 359.97438 * 6 4 2 37 37 H 1.08998 * 109.47555 * 59.99691 * 9 7 6 38 38 H 1.08997 * 109.47278 * 299.99299 * 9 7 6 39 39 H 1.09000 * 109.47012 * 179.97438 * 10 9 7 40 40 H 1.08998 * 109.47319 * 60.00144 * 10 9 7 41 41 H 1.08998 * 109.46926 * 299.99847 * 11 10 9 42 42 H 1.09003 * 109.47129 * 180.02562 * 11 10 9 43 43 H 0.97000 * 120.00577 * 265.00234 * 14 12 11 44 44 H 0.97001 * 119.99885 * 359.97438 * 18 17 15 45 45 H 1.09000 * 109.46894 * 180.02562 * 23 12 11 46 46 H 1.08998 * 109.47683 * 300.00006 * 23 12 11 47 47 H 1.08999 * 109.51247 * 297.54428 * 25 24 2 48 48 H 1.09006 * 109.50714 * 57.67584 * 25 24 2 49 49 H 1.09000 * 109.50920 * 296.91627 * 26 25 24 50 50 H 1.09004 * 109.53884 * 176.80773 * 26 25 24 51 51 H 1.09002 * 109.50883 * 298.73713 * 28 27 26 52 52 H 1.09005 * 109.50485 * 178.60561 * 28 27 26 53 53 H 1.09004 * 109.50761 * 302.33156 * 29 24 2 54 54 H 1.09002 * 109.50781 * 62.41293 * 29 24 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0324 -0.7105 1.2303 5 8 2.3209 -0.0749 2.2222 6 7 2.1611 -2.0520 1.2284 7 6 2.6491 -2.7427 2.4248 8 1 3.3928 -2.1222 2.9246 9 6 1.4794 -3.0032 3.3760 10 6 1.9889 -3.7251 4.6251 11 6 2.6239 -5.0571 4.2209 12 6 3.7936 -4.7967 3.2697 13 1 4.2457 -5.7458 2.9814 14 7 4.7933 -3.9632 3.9417 15 6 5.7429 -4.5426 4.7403 16 1 5.7549 -5.6141 4.8745 17 6 6.6900 -3.7527 5.3776 18 7 6.6750 -2.4467 5.2146 19 14 7.9856 -4.5433 6.4665 20 1 7.4786 -4.6245 7.8599 21 1 8.2845 -5.9098 5.9680 22 1 9.2238 -3.7239 6.4373 23 6 3.2840 -4.0749 2.0206 24 7 2.0196 -0.6924 -1.1995 25 6 3.4866 -0.7877 -1.1909 26 6 3.9493 -1.5664 -2.4252 27 8 3.4556 -0.9213 -3.6023 28 6 2.0302 -0.8120 -3.6440 29 6 1.5481 -0.0257 -2.4220 30 1 -0.3633 0.5137 0.8901 31 1 -0.3635 0.5138 -0.8899 32 1 -0.3633 -1.0277 -0.0005 33 1 3.1299 1.4425 -0.0005 34 1 1.6765 1.9564 -0.8899 35 1 1.6767 1.9562 0.8901 36 1 1.9300 -2.5604 0.4353 37 1 0.7357 -3.6237 2.8761 38 1 1.0268 -2.0542 3.6636 39 1 1.1557 -3.9102 5.3030 40 1 2.7328 -3.1049 5.1252 41 1 1.8800 -5.6773 3.7209 42 1 2.9865 -5.5716 5.1108 43 1 4.7828 -3.0007 3.8211 44 1 6.0023 -2.0363 4.6489 45 1 4.1173 -3.8897 1.3427 46 1 2.5402 -4.6950 1.5205 47 1 3.9166 0.2137 -1.2100 48 1 3.8123 -1.3072 -0.2897 49 1 3.5631 -2.5847 -2.3791 50 1 5.0387 -1.5912 -2.4534 51 1 1.5882 -1.8083 -3.6333 52 1 1.7317 -0.2904 -4.5535 53 1 0.4587 0.0112 -2.4195 54 1 1.9465 0.9882 -2.4604 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000981383056.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:50:19 Heat of formation + Delta-G solvation = -91.551727 kcal Electronic energy + Delta-G solvation = -32416.717061 eV Core-core repulsion = 28387.503483 eV Total energy + Delta-G solvation = -4029.213577 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 339.231 amu Computer time = 1.27 seconds Orbital eigenvalues (eV) -41.98959 -40.45538 -39.50003 -37.49827 -36.26817 -34.87572 -33.05860 -32.68103 -32.19299 -30.65330 -29.52647 -28.43047 -27.59599 -25.67496 -25.39845 -24.19359 -23.42297 -22.67960 -21.68681 -20.70991 -19.96820 -19.24525 -18.68041 -17.60108 -17.22911 -16.92412 -16.44217 -16.33859 -16.10492 -15.98067 -15.81193 -15.64561 -15.47637 -15.29612 -15.21897 -15.11795 -14.83429 -13.99397 -13.78988 -13.57833 -13.48190 -13.32955 -13.21744 -13.07825 -12.97083 -12.86524 -12.68344 -12.55167 -12.50059 -12.37168 -12.23082 -12.07940 -11.89530 -11.67070 -11.60626 -11.46140 -11.32270 -11.21008 -10.84848 -10.78344 -10.61925 -10.03746 -9.56283 -9.07020 -8.35881 -5.28324 1.51097 1.55864 1.67166 1.80667 2.09562 2.51819 2.72387 2.94191 3.42575 3.45310 3.65646 3.77527 3.78957 3.87795 3.89042 3.95224 3.98399 4.07974 4.09278 4.24027 4.26330 4.32380 4.35792 4.47370 4.48443 4.57292 4.58813 4.60586 4.65815 4.67115 4.71542 4.72680 4.78755 4.83666 4.87723 4.92077 4.99605 5.01282 5.09277 5.11172 5.19397 5.21579 5.34265 5.40723 5.51795 5.55301 5.66565 5.66862 5.80345 6.18326 6.49332 6.56717 7.12934 7.24539 8.04129 8.16831 9.15124 Molecular weight = 339.23amu Principal moments of inertia in cm(-1) A = 0.013742 B = 0.003165 C = 0.002969 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2037.066379 B = 8845.166634 C = 9428.315312 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C 0.098 3.902 3 C -0.166 4.166 4 C 0.519 3.481 5 O -0.588 6.588 6 N -0.697 5.697 7 C 0.153 3.847 8 H 0.036 0.964 9 C -0.108 4.108 10 C -0.105 4.105 11 C -0.125 4.125 12 C 0.173 3.827 13 H 0.051 0.949 14 N -0.745 5.745 15 C -0.319 4.319 16 H 0.069 0.931 17 C -0.112 4.112 18 N -0.980 5.980 19 Si 1.128 2.872 20 H -0.288 1.288 21 H -0.269 1.269 22 H -0.297 1.297 23 C -0.113 4.113 24 N -0.513 5.513 25 C 0.007 3.993 26 C 0.072 3.928 27 O -0.404 6.404 28 C 0.061 3.939 29 C 0.011 3.989 30 H 0.059 0.941 31 H 0.097 0.903 32 H 0.079 0.921 33 H 0.039 0.961 34 H 0.091 0.909 35 H 0.060 0.940 36 H 0.418 0.582 37 H 0.093 0.907 38 H 0.043 0.957 39 H 0.069 0.931 40 H 0.022 0.978 41 H 0.087 0.913 42 H 0.038 0.962 43 H 0.356 0.644 44 H 0.238 0.762 45 H 0.058 0.942 46 H 0.108 0.892 47 H 0.035 0.965 48 H 0.071 0.929 49 H 0.072 0.928 50 H 0.099 0.901 51 H 0.070 0.930 52 H 0.118 0.882 53 H 0.118 0.882 54 H 0.045 0.955 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.914 0.609 -20.476 27.213 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C 0.005 3.995 3 C -0.225 4.225 4 C 0.306 3.694 5 O -0.467 6.467 6 N -0.348 5.348 7 C 0.048 3.952 8 H 0.055 0.945 9 C -0.147 4.147 10 C -0.143 4.143 11 C -0.165 4.165 12 C 0.065 3.935 13 H 0.069 0.931 14 N -0.388 5.388 15 C -0.451 4.451 16 H 0.087 0.913 17 C -0.302 4.302 18 N -0.629 5.629 19 Si 0.954 3.046 20 H -0.216 1.216 21 H -0.194 1.194 22 H -0.224 1.224 23 C -0.152 4.152 24 N -0.239 5.239 25 C -0.122 4.122 26 C -0.005 4.005 27 O -0.323 6.323 28 C -0.016 4.016 29 C -0.116 4.116 30 H 0.078 0.922 31 H 0.115 0.885 32 H 0.098 0.902 33 H 0.058 0.942 34 H 0.110 0.890 35 H 0.080 0.920 36 H 0.257 0.743 37 H 0.111 0.889 38 H 0.062 0.938 39 H 0.088 0.912 40 H 0.041 0.959 41 H 0.106 0.894 42 H 0.056 0.944 43 H 0.188 0.812 44 H 0.048 0.952 45 H 0.077 0.923 46 H 0.127 0.873 47 H 0.053 0.947 48 H 0.089 0.911 49 H 0.090 0.910 50 H 0.117 0.883 51 H 0.088 0.912 52 H 0.136 0.864 53 H 0.136 0.864 54 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges -16.466 0.645 -18.943 25.107 hybrid contribution -0.600 1.039 -0.317 1.241 sum -17.066 1.684 -19.260 25.789 Atomic orbital electron populations 1.21858 0.88955 1.04273 1.03848 1.21263 0.98708 0.92142 0.87376 1.22254 1.00762 0.95866 1.03605 1.20927 0.76435 0.82800 0.89270 1.90745 1.51443 1.67274 1.37219 1.45974 1.65743 1.06536 1.16547 1.20712 0.95317 0.93169 0.86006 0.94528 1.21737 0.97400 0.99819 0.95701 1.21279 0.99013 0.96845 0.97190 1.22036 0.98159 0.96548 0.99773 1.20418 0.88669 0.93490 0.90954 0.93135 1.42744 1.34042 1.05077 1.56930 1.20419 1.08285 0.93413 1.22985 0.91317 1.27137 1.03677 0.95636 1.03745 1.70970 1.38021 1.10846 1.43037 0.82612 0.73421 0.74194 0.74398 1.21565 1.19401 1.22381 1.21940 1.00607 0.95016 0.97629 1.62530 1.09028 1.50801 1.01534 1.22905 0.88674 1.00220 1.00394 1.22613 0.99706 0.95682 0.82511 1.87982 1.22865 1.80259 1.41171 1.22886 0.79985 1.00863 0.97849 1.23057 1.02985 0.96689 0.88898 0.92164 0.88465 0.90204 0.94178 0.88988 0.92045 0.74339 0.88857 0.93843 0.91225 0.95896 0.89421 0.94351 0.81167 0.95170 0.92330 0.87343 0.94669 0.91057 0.90982 0.88335 0.91208 0.86432 0.86437 0.93641 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.89 8.23 71.98 0.59 -1.30 16 2 C 0.10 1.99 0.64 2.78 0.00 1.99 16 3 C -0.17 -3.66 7.31 71.98 0.53 -3.13 16 4 C 0.52 15.30 5.38 87.66 0.47 15.77 16 5 O -0.59 -23.93 15.76 -3.04 -0.05 -23.98 16 6 N -0.70 -17.99 3.97 -442.53 -1.76 -19.74 16 7 C 0.15 4.94 2.28 44.99 0.10 5.04 16 8 H 0.04 1.62 5.94 -2.39 -0.01 1.61 16 9 C -0.11 -3.25 5.49 30.59 0.17 -3.09 16 10 C -0.10 -3.65 5.77 30.59 0.18 -3.48 16 11 C -0.13 -4.23 5.61 30.59 0.17 -4.05 16 12 C 0.17 6.57 3.10 44.99 0.14 6.71 16 13 H 0.05 1.94 8.08 -2.38 -0.02 1.92 16 14 N -0.75 -37.81 4.27 -322.95 -1.38 -39.19 16 15 C -0.32 -18.17 9.93 84.03 0.83 -17.33 16 16 H 0.07 3.77 7.83 -2.91 -0.02 3.75 16 17 C -0.11 -6.69 5.50 84.86 0.47 -6.22 16 18 N -0.98 -64.66 13.70 21.65 0.30 -64.36 16 19 Si 1.13 53.91 29.92 68.60 2.05 55.96 16 20 H -0.29 -13.28 7.11 99.48 0.71 -12.57 16 21 H -0.27 -11.54 7.11 99.48 0.71 -10.83 16 22 H -0.30 -14.50 7.11 99.48 0.71 -13.79 16 23 C -0.11 -3.36 5.08 30.60 0.16 -3.21 16 24 N -0.51 -8.51 3.83 -849.92 -3.25 -11.76 16 25 C 0.01 0.14 4.86 86.32 0.42 0.56 16 26 C 0.07 1.31 7.01 72.02 0.50 1.81 16 27 O -0.40 -7.54 10.83 -148.98 -1.61 -9.15 16 28 C 0.06 0.71 7.01 72.02 0.50 1.21 16 29 C 0.01 0.13 4.87 86.31 0.42 0.55 16 30 H 0.06 1.01 8.14 -2.39 -0.02 0.99 16 31 H 0.10 0.85 6.35 -2.39 -0.02 0.84 16 32 H 0.08 1.02 8.14 -2.38 -0.02 1.00 16 33 H 0.04 1.05 6.54 -2.39 -0.02 1.04 16 34 H 0.09 1.47 6.46 -2.39 -0.02 1.46 16 35 H 0.06 1.54 7.87 -2.39 -0.02 1.52 16 36 H 0.42 8.24 7.92 -92.71 -0.73 7.51 16 37 H 0.09 2.15 8.14 -2.39 -0.02 2.13 16 38 H 0.04 1.44 8.14 -2.39 -0.02 1.42 16 39 H 0.07 2.12 8.14 -2.39 -0.02 2.11 16 40 H 0.02 1.01 7.60 -2.39 -0.02 0.99 16 41 H 0.09 2.25 8.14 -2.39 -0.02 2.23 16 42 H 0.04 1.46 8.14 -2.39 -0.02 1.44 16 43 H 0.36 19.72 4.90 -92.71 -0.45 19.27 16 44 H 0.24 16.03 6.77 -92.71 -0.63 15.40 16 45 H 0.06 1.84 8.14 -2.39 -0.02 1.82 16 46 H 0.11 2.29 8.14 -2.39 -0.02 2.27 16 47 H 0.04 0.85 6.52 -2.39 -0.02 0.83 16 48 H 0.07 1.83 6.22 -2.38 -0.01 1.82 16 49 H 0.07 1.15 8.14 -2.39 -0.02 1.13 16 50 H 0.10 1.77 8.14 -2.38 -0.02 1.75 16 51 H 0.07 0.70 8.14 -2.39 -0.02 0.69 16 52 H 0.12 0.89 8.14 -2.38 -0.02 0.87 16 53 H 0.12 0.81 6.19 -2.39 -0.01 0.80 16 54 H 0.05 0.62 6.44 -2.39 -0.02 0.60 16 Total: -1.00 -78.20 399.11 -0.19 -78.39 By element: Atomic # 1 Polarization: 42.14 SS G_CDS: -0.15 Total: 41.99 kcal Atomic # 6 Polarization: -13.82 SS G_CDS: 5.65 Total: -8.16 kcal Atomic # 7 Polarization: -128.97 SS G_CDS: -6.09 Total: -135.06 kcal Atomic # 8 Polarization: -31.46 SS G_CDS: -1.66 Total: -33.13 kcal Atomic # 14 Polarization: 53.91 SS G_CDS: 2.05 Total: 55.96 kcal Total: -78.20 -0.19 -78.39 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000981383056.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.159 kcal (2) G-P(sol) polarization free energy of solvation -78.200 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -91.359 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.192 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.392 kcal (6) G-S(sol) free energy of system = (1) + (5) -91.552 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.27 seconds