Wall clock time and date at job start Sat Apr 11 2020 05:50:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53004 * 109.46591 * 2 1 4 4 C 1.50702 * 109.46948 * 240.00846 * 2 1 3 5 5 O 1.21276 * 120.00489 * 94.93304 * 4 2 1 6 6 N 1.34778 * 119.99485 * 274.92360 * 4 2 1 7 7 C 1.46502 * 119.99909 * 185.38720 * 6 4 2 8 8 H 1.09010 * 109.47076 * 325.00238 * 7 6 4 9 9 C 1.52998 * 109.46922 * 85.00589 * 7 6 4 10 10 C 1.53003 * 109.46871 * 180.02562 * 9 7 6 11 11 C 1.53007 * 109.46913 * 299.99832 * 10 9 7 12 12 C 1.52990 * 109.47021 * 60.00199 * 11 10 9 13 13 H 1.08997 * 109.47766 * 60.00311 * 12 11 10 14 14 N 1.46504 * 109.47261 * 180.02562 * 12 11 10 15 15 C 1.36933 * 120.00040 * 275.00410 * 14 12 11 16 16 H 1.08003 * 119.99763 * 359.97438 * 15 14 12 17 17 C 1.38817 * 120.00193 * 179.97438 * 15 14 12 18 18 N 1.31619 * 119.99831 * 359.97438 * 17 15 14 19 19 Si 1.86802 * 120.00094 * 179.97438 * 17 15 14 20 20 H 1.48505 * 109.46925 * 60.00088 * 19 17 15 21 21 H 1.48489 * 109.47063 * 180.02562 * 19 17 15 22 22 H 1.48496 * 109.47219 * 300.00636 * 19 17 15 23 23 C 1.52999 * 109.47452 * 299.99590 * 12 11 10 24 24 N 1.46899 * 109.47502 * 120.00297 * 2 1 3 25 25 C 1.47024 * 110.99726 * 177.87384 * 24 2 1 26 26 C 1.53099 * 109.25366 * 182.34865 * 25 24 2 27 27 O 1.43013 * 109.29655 * 303.21935 * 26 25 24 28 28 C 1.43016 * 113.73624 * 58.64777 * 27 26 25 29 29 C 1.47011 * 111.00001 * 301.55328 * 24 2 1 30 30 H 1.08998 * 109.46961 * 299.99237 * 1 2 3 31 31 H 1.08993 * 109.47715 * 60.00054 * 1 2 3 32 32 H 1.09005 * 109.46858 * 179.97438 * 1 2 3 33 33 H 1.09004 * 109.46969 * 179.97438 * 3 2 1 34 34 H 1.08989 * 109.47520 * 300.00274 * 3 2 1 35 35 H 1.09003 * 109.47159 * 60.01065 * 3 2 1 36 36 H 0.96999 * 120.00017 * 5.39578 * 6 4 2 37 37 H 1.08999 * 109.46906 * 299.99464 * 9 7 6 38 38 H 1.08993 * 109.47481 * 60.00198 * 9 7 6 39 39 H 1.08998 * 109.47567 * 59.99920 * 10 9 7 40 40 H 1.08996 * 109.47147 * 179.97438 * 10 9 7 41 41 H 1.08998 * 109.47102 * 180.02562 * 11 10 9 42 42 H 1.09002 * 109.46601 * 300.00269 * 11 10 9 43 43 H 0.97000 * 120.00435 * 94.99138 * 14 12 11 44 44 H 0.96999 * 119.99729 * 179.97438 * 18 17 15 45 45 H 1.09002 * 109.47609 * 300.00811 * 23 12 11 46 46 H 1.09001 * 109.47589 * 179.97438 * 23 12 11 47 47 H 1.09000 * 109.46911 * 62.44101 * 25 24 2 48 48 H 1.08998 * 109.54051 * 302.30892 * 25 24 2 49 49 H 1.08996 * 109.50523 * 183.26227 * 26 25 24 50 50 H 1.09001 * 109.50426 * 63.17372 * 26 25 24 51 51 H 1.09000 * 109.50869 * 61.26504 * 28 27 26 52 52 H 1.09000 * 109.50491 * 181.35309 * 28 27 26 53 53 H 1.09001 * 109.50385 * 57.67345 * 29 24 2 54 54 H 1.09001 * 109.50592 * 297.54561 * 29 24 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 2.0323 -0.7102 -1.2306 5 8 2.3196 -0.0748 -2.2228 6 7 2.1624 -2.0517 -1.2284 7 6 2.7607 -2.7315 -2.3800 8 1 2.4808 -2.2102 -3.2955 9 6 4.2841 -2.7304 -2.2378 10 6 4.9090 -3.4398 -3.4409 11 6 4.4034 -4.8827 -3.5012 12 6 2.8801 -4.8837 -3.6433 13 1 2.6001 -4.3621 -4.5585 14 7 2.3959 -6.2652 -3.7005 15 6 2.3765 -6.9350 -4.8947 16 1 2.7177 -6.4447 -5.7945 17 6 1.9182 -8.2442 -4.9489 18 7 1.5028 -8.8419 -3.8522 19 14 1.8910 -9.1577 -6.5781 20 1 3.2698 -9.2374 -7.1239 21 1 1.3612 -10.5289 -6.3679 22 1 1.0200 -8.4326 -7.5376 23 6 2.2552 -4.1744 -2.4404 24 7 2.0197 -0.6925 1.1994 25 6 3.4886 -0.7563 1.2080 26 6 3.9528 -1.5350 2.4417 27 8 3.4302 -0.9120 3.6181 28 6 2.0023 -0.8346 3.6426 29 6 1.5183 -0.0478 2.4217 30 1 -0.3633 0.5137 0.8900 31 1 -0.3634 0.5138 -0.8899 32 1 -0.3633 -1.0277 -0.0005 33 1 3.1299 1.4427 0.0005 34 1 1.6765 1.9564 -0.8898 35 1 1.6766 1.9563 0.8901 36 1 1.8598 -2.5671 -0.4644 37 1 4.6443 -1.7025 -2.1953 38 1 4.5640 -3.2517 -1.3225 39 1 4.6291 -2.9182 -4.3561 40 1 5.9943 -3.4387 -3.3399 41 1 4.8489 -5.3882 -4.3580 42 1 4.6834 -5.4043 -2.5860 43 1 2.0893 -6.7056 -2.8925 44 1 1.1822 -9.7566 -3.8902 45 1 2.5351 -4.6960 -1.5251 46 1 1.1699 -4.1747 -2.5418 47 1 3.8959 0.2542 1.2409 48 1 3.8369 -1.2607 0.3067 49 1 5.0420 -1.5353 2.4833 50 1 3.5906 -2.5613 2.3818 51 1 1.5828 -1.8403 3.6172 52 1 1.6808 -0.3290 4.5531 53 1 0.4285 -0.0351 2.4056 54 1 1.8941 0.9740 2.4747 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000981383057.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:50:22 Heat of formation + Delta-G solvation = -94.639127 kcal Electronic energy + Delta-G solvation = -31795.267589 eV Core-core repulsion = 27765.920132 eV Total energy + Delta-G solvation = -4029.347457 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 339.231 amu Computer time = 1.18 seconds Orbital eigenvalues (eV) -41.91840 -40.31209 -39.32434 -37.44737 -36.25186 -34.77093 -33.03456 -32.89133 -32.16998 -30.67308 -29.41702 -28.38137 -27.55000 -25.77810 -25.35154 -24.11379 -23.16403 -22.31935 -21.50658 -21.04564 -20.10258 -19.14141 -18.55534 -17.52681 -17.18834 -16.83853 -16.51195 -16.18434 -16.07684 -15.94321 -15.61167 -15.55202 -15.32127 -15.20838 -15.03493 -14.95266 -14.74764 -14.30702 -13.78674 -13.55252 -13.51726 -13.40578 -13.16222 -13.00941 -12.90520 -12.82045 -12.79173 -12.47883 -12.32833 -12.26679 -12.16797 -12.04403 -12.02486 -11.96785 -11.64075 -11.47239 -11.42171 -11.36961 -10.87019 -10.76575 -10.58793 -9.98215 -9.47356 -8.99310 -7.93262 -5.21028 1.47324 1.49552 1.54294 1.55617 2.14152 2.56989 2.58252 2.98565 3.39699 3.50411 3.64073 3.81420 3.88472 3.92463 3.94400 4.03595 4.05611 4.15153 4.27012 4.29629 4.31164 4.35586 4.44480 4.52612 4.54207 4.57385 4.62808 4.64314 4.66873 4.69988 4.75846 4.76744 4.83208 4.87822 4.91275 5.02991 5.03167 5.12121 5.15723 5.16186 5.21785 5.22777 5.34920 5.49606 5.50444 5.54301 5.65783 5.75507 5.86320 6.21706 6.29374 6.60132 7.24665 7.35657 8.11493 8.35391 9.29888 Molecular weight = 339.23amu Principal moments of inertia in cm(-1) A = 0.016382 B = 0.002567 C = 0.002505 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1708.800428 B =10906.480473 C =11173.927719 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C 0.096 3.904 3 C -0.162 4.162 4 C 0.527 3.473 5 O -0.581 6.581 6 N -0.702 5.702 7 C 0.156 3.844 8 H 0.065 0.935 9 C -0.113 4.113 10 C -0.106 4.106 11 C -0.125 4.125 12 C 0.178 3.822 13 H 0.034 0.966 14 N -0.735 5.735 15 C -0.239 4.239 16 H 0.071 0.929 17 C -0.074 4.074 18 N -0.968 5.968 19 Si 0.968 3.032 20 H -0.279 1.279 21 H -0.295 1.295 22 H -0.280 1.280 23 C -0.112 4.112 24 N -0.521 5.521 25 C 0.010 3.990 26 C 0.068 3.932 27 O -0.404 6.404 28 C 0.060 3.940 29 C 0.013 3.987 30 H 0.094 0.906 31 H 0.061 0.939 32 H 0.070 0.930 33 H 0.050 0.950 34 H 0.063 0.937 35 H 0.085 0.915 36 H 0.415 0.585 37 H 0.059 0.941 38 H 0.076 0.924 39 H 0.056 0.944 40 H 0.076 0.924 41 H 0.040 0.960 42 H 0.054 0.946 43 H 0.374 0.626 44 H 0.251 0.749 45 H 0.074 0.926 46 H 0.057 0.943 47 H 0.043 0.957 48 H 0.082 0.918 49 H 0.106 0.894 50 H 0.063 0.937 51 H 0.062 0.938 52 H 0.116 0.884 53 H 0.110 0.890 54 H 0.050 0.950 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.390 21.487 16.830 27.329 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C 0.003 3.997 3 C -0.221 4.221 4 C 0.313 3.687 5 O -0.460 6.460 6 N -0.352 5.352 7 C 0.051 3.949 8 H 0.084 0.916 9 C -0.151 4.151 10 C -0.145 4.145 11 C -0.166 4.166 12 C 0.069 3.931 13 H 0.052 0.948 14 N -0.375 5.375 15 C -0.371 4.371 16 H 0.089 0.911 17 C -0.266 4.266 18 N -0.619 5.619 19 Si 0.797 3.203 20 H -0.205 1.205 21 H -0.221 1.221 22 H -0.207 1.207 23 C -0.151 4.151 24 N -0.247 5.247 25 C -0.119 4.119 26 C -0.009 4.009 27 O -0.323 6.323 28 C -0.016 4.016 29 C -0.114 4.114 30 H 0.113 0.887 31 H 0.080 0.920 32 H 0.089 0.911 33 H 0.069 0.931 34 H 0.082 0.918 35 H 0.104 0.896 36 H 0.253 0.747 37 H 0.078 0.922 38 H 0.094 0.906 39 H 0.074 0.926 40 H 0.095 0.905 41 H 0.059 0.941 42 H 0.073 0.927 43 H 0.206 0.794 44 H 0.059 0.941 45 H 0.093 0.907 46 H 0.076 0.924 47 H 0.061 0.939 48 H 0.100 0.900 49 H 0.124 0.876 50 H 0.081 0.919 51 H 0.080 0.920 52 H 0.133 0.867 53 H 0.128 0.872 54 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges 1.541 21.466 16.075 26.862 hybrid contribution -0.108 -0.563 -0.858 1.032 sum 1.433 20.903 15.217 25.895 Atomic orbital electron populations 1.21889 0.89951 1.03816 1.03829 1.21245 0.98124 0.92630 0.87665 1.22219 1.01233 0.95170 1.03492 1.20746 0.76342 0.82532 0.89081 1.90692 1.52009 1.67060 1.36227 1.46024 1.61595 1.06717 1.20860 1.20764 0.93227 0.91681 0.89232 0.91642 1.21789 0.93780 1.00281 0.99280 1.21412 1.00458 0.94640 0.97980 1.22082 0.97357 0.96268 1.00851 1.20297 0.92457 0.84565 0.95780 0.94827 1.42562 1.76710 1.10773 1.07452 1.19541 1.34121 0.95004 0.88402 0.91090 1.25484 1.02722 0.98235 1.00145 1.69794 1.50879 1.13127 1.28059 0.85292 0.77827 0.77429 0.79722 1.20533 1.22105 1.20651 1.21847 1.00081 0.93937 0.99247 1.62461 1.08984 1.51852 1.01447 1.22922 0.88093 1.00428 1.00428 1.22674 0.99618 0.95810 0.82826 1.87972 1.22010 1.81076 1.41229 1.22840 0.80134 1.00614 0.98037 1.22996 1.02495 0.96951 0.88963 0.88744 0.91962 0.91071 0.93124 0.91821 0.89608 0.74748 0.92186 0.90556 0.92553 0.90497 0.94100 0.92712 0.79430 0.94056 0.90744 0.92377 0.93890 0.89963 0.87601 0.91880 0.91956 0.86650 0.87150 0.93193 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.90 8.18 71.98 0.59 -1.31 16 2 C 0.10 1.63 0.63 2.78 0.00 1.63 16 3 C -0.16 -2.72 7.31 71.98 0.53 -2.20 16 4 C 0.53 12.70 5.38 87.66 0.47 13.17 16 5 O -0.58 -18.67 15.73 -3.02 -0.05 -18.72 16 6 N -0.70 -15.82 4.03 -442.51 -1.79 -17.60 16 7 C 0.16 4.21 2.50 44.99 0.11 4.32 16 8 H 0.07 2.09 7.51 -2.38 -0.02 2.07 16 9 C -0.11 -2.76 5.49 30.59 0.17 -2.59 16 10 C -0.11 -2.86 5.92 30.60 0.18 -2.68 16 11 C -0.13 -4.32 5.50 30.59 0.17 -4.15 16 12 C 0.18 6.91 2.77 44.99 0.12 7.03 16 13 H 0.03 1.40 8.08 -2.39 -0.02 1.38 16 14 N -0.74 -36.63 5.12 -322.95 -1.65 -38.28 16 15 C -0.24 -13.27 9.93 84.04 0.83 -12.43 16 16 H 0.07 3.84 7.83 -2.91 -0.02 3.82 16 17 C -0.07 -4.22 5.50 84.86 0.47 -3.75 16 18 N -0.97 -58.81 13.06 21.65 0.28 -58.53 16 19 Si 0.97 46.30 29.55 68.60 2.03 48.33 16 20 H -0.28 -12.90 7.11 99.48 0.71 -12.19 16 21 H -0.29 -14.16 7.11 99.48 0.71 -13.46 16 22 H -0.28 -13.00 7.11 99.48 0.71 -12.29 16 23 C -0.11 -3.49 4.86 30.60 0.15 -3.34 16 24 N -0.52 -7.42 3.87 -849.90 -3.29 -10.71 16 25 C 0.01 0.15 4.89 86.31 0.42 0.57 16 26 C 0.07 1.00 7.01 72.02 0.50 1.50 16 27 O -0.40 -6.74 10.83 -148.98 -1.61 -8.35 16 28 C 0.06 0.68 7.01 72.01 0.50 1.19 16 29 C 0.01 0.14 4.87 86.31 0.42 0.56 16 30 H 0.09 0.83 6.33 -2.39 -0.02 0.81 16 31 H 0.06 0.98 8.14 -2.39 -0.02 0.96 16 32 H 0.07 1.01 8.14 -2.38 -0.02 0.99 16 33 H 0.05 0.96 6.50 -2.38 -0.02 0.94 16 34 H 0.06 1.24 7.87 -2.39 -0.02 1.22 16 35 H 0.09 1.05 6.49 -2.39 -0.02 1.04 16 36 H 0.42 8.11 8.06 -92.71 -0.75 7.36 16 37 H 0.06 1.48 8.14 -2.39 -0.02 1.46 16 38 H 0.08 1.68 8.14 -2.39 -0.02 1.66 16 39 H 0.06 1.57 8.14 -2.39 -0.02 1.55 16 40 H 0.08 1.81 8.14 -2.39 -0.02 1.79 16 41 H 0.04 1.57 8.14 -2.39 -0.02 1.55 16 42 H 0.05 1.89 8.14 -2.39 -0.02 1.87 16 43 H 0.37 19.79 7.80 -92.71 -0.72 19.07 16 44 H 0.25 14.83 8.31 -92.71 -0.77 14.06 16 45 H 0.07 2.19 8.14 -2.39 -0.02 2.17 16 46 H 0.06 1.92 8.14 -2.39 -0.02 1.91 16 47 H 0.04 0.74 6.48 -2.39 -0.02 0.72 16 48 H 0.08 1.48 6.34 -2.39 -0.02 1.46 16 49 H 0.11 1.35 8.14 -2.39 -0.02 1.33 16 50 H 0.06 0.92 8.14 -2.39 -0.02 0.90 16 51 H 0.06 0.71 8.14 -2.39 -0.02 0.69 16 52 H 0.12 0.87 8.14 -2.39 -0.02 0.85 16 53 H 0.11 0.79 6.15 -2.39 -0.01 0.78 16 54 H 0.05 0.55 6.47 -2.39 -0.02 0.54 16 Total: -1.00 -68.34 405.48 -1.01 -69.35 By element: Atomic # 1 Polarization: 37.57 SS G_CDS: -0.58 Total: 36.99 kcal Atomic # 6 Polarization: -8.11 SS G_CDS: 5.65 Total: -2.47 kcal Atomic # 7 Polarization: -118.68 SS G_CDS: -6.45 Total: -125.13 kcal Atomic # 8 Polarization: -25.41 SS G_CDS: -1.66 Total: -27.07 kcal Atomic # 14 Polarization: 46.30 SS G_CDS: 2.03 Total: 48.33 kcal Total: -68.34 -1.01 -69.35 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000981383057.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -25.288 kcal (2) G-P(sol) polarization free energy of solvation -68.337 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -93.625 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.014 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.351 kcal (6) G-S(sol) free energy of system = (1) + (5) -94.639 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.18 seconds