Wall clock time and date at job start Sat Apr 11 2020 05:50:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46504 * 1 3 3 C 1.36940 * 119.99652 * 2 1 4 4 H 1.07997 * 119.99717 * 141.73039 * 3 2 1 5 5 C 1.38811 * 120.00021 * 321.73200 * 3 2 1 6 6 N 1.31613 * 119.99811 * 160.00298 * 5 3 2 7 7 Si 1.86796 * 120.00031 * 339.99809 * 5 3 2 8 8 H 1.48506 * 109.47112 * 95.53598 * 7 5 3 9 9 H 1.48500 * 109.47263 * 215.53567 * 7 5 3 10 10 H 1.48493 * 109.47335 * 335.53602 * 7 5 3 11 11 C 1.46492 * 120.00063 * 180.02562 * 2 1 3 12 12 H 1.09001 * 109.50075 * 183.42834 * 11 2 1 13 13 C 1.53042 * 109.49862 * 303.49400 * 11 2 1 14 14 C 1.53036 * 109.53784 * 181.35276 * 13 11 2 15 15 C 1.53196 * 109.31167 * 298.63079 * 14 13 11 16 16 N 1.46932 * 108.77513 * 54.63966 * 15 14 13 17 17 C 1.34768 * 120.63193 * 126.37173 * 16 15 14 18 18 O 1.21282 * 119.99966 * 3.53690 * 17 16 15 19 19 C 1.50702 * 119.99868 * 183.53964 * 17 16 15 20 20 C 1.52999 * 109.47006 * 73.94383 * 19 17 16 21 21 C 1.52999 * 109.47150 * 193.94146 * 19 17 16 22 22 N 1.46896 * 109.47328 * 313.94383 * 19 17 16 23 23 C 1.47014 * 110.99521 * 300.81038 * 22 19 17 24 24 C 1.53107 * 109.25665 * 177.60499 * 23 22 19 25 25 O 1.43020 * 109.25558 * 56.84837 * 24 23 22 26 26 C 1.43017 * 113.73763 * 301.32907 * 25 24 23 27 27 C 1.47010 * 111.00209 * 177.17527 * 22 19 17 28 28 C 1.46924 * 118.73147 * 306.64139 * 16 15 14 29 29 H 1.09003 * 109.47067 * 266.35913 * 1 2 3 30 30 H 1.08997 * 109.47179 * 26.36283 * 1 2 3 31 31 H 1.09000 * 109.47048 * 146.36408 * 1 2 3 32 32 H 0.97003 * 119.99928 * 179.97438 * 6 5 3 33 33 H 1.08993 * 109.46333 * 61.32785 * 13 11 2 34 34 H 1.09004 * 109.45642 * 301.36658 * 13 11 2 35 35 H 1.09000 * 109.49876 * 178.68305 * 14 13 11 36 36 H 1.09005 * 109.50277 * 58.57942 * 14 13 11 37 37 H 1.08998 * 109.58795 * 294.85085 * 15 14 13 38 38 H 1.09003 * 109.58642 * 174.42239 * 15 14 13 39 39 H 1.09000 * 109.47198 * 179.97438 * 20 19 17 40 40 H 1.09000 * 109.47417 * 60.00171 * 20 19 17 41 41 H 1.09002 * 109.47315 * 299.99803 * 20 19 17 42 42 H 1.08998 * 109.47477 * 300.00340 * 21 19 17 43 43 H 1.09001 * 109.46858 * 60.00019 * 21 19 17 44 44 H 1.08995 * 109.47388 * 179.97438 * 21 19 17 45 45 H 1.09004 * 109.51017 * 297.53755 * 23 22 19 46 46 H 1.09001 * 109.51285 * 57.67331 * 23 22 19 47 47 H 1.08996 * 109.50474 * 296.91750 * 24 23 22 48 48 H 1.09000 * 109.50818 * 176.78341 * 24 23 22 49 49 H 1.09009 * 109.50702 * 298.73890 * 26 25 24 50 50 H 1.08996 * 109.54223 * 178.63160 * 26 25 24 51 51 H 1.09005 * 109.50319 * 302.32462 * 27 22 19 52 52 H 1.08998 * 109.50875 * 62.41448 * 27 22 19 53 53 H 1.09006 * 109.58063 * 173.14687 * 28 16 15 54 54 H 1.08997 * 109.59117 * 293.57005 * 28 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1497 1.1860 0.0000 4 1 3.0556 1.2865 0.5793 5 6 1.6793 2.2589 -0.7445 6 7 2.0751 3.4814 -0.4598 7 14 0.4846 1.9678 -2.1507 8 1 -0.9059 2.1648 -1.6677 9 1 0.7681 2.9274 -3.2479 10 1 0.6416 0.5797 -2.6542 11 6 2.1975 -1.2686 -0.0006 12 1 3.2677 -1.0710 0.0610 13 6 1.7635 -2.1096 1.2021 14 6 2.5525 -3.4208 1.2213 15 6 2.2516 -4.2119 -0.0556 16 7 2.5298 -3.3572 -1.2180 17 6 3.3538 -3.7777 -2.1979 18 8 3.8232 -4.8953 -2.1577 19 6 3.6922 -2.8592 -3.3437 20 6 4.6659 -1.7813 -2.8629 21 6 4.3407 -3.6664 -4.4701 22 7 2.4647 -2.2236 -3.8408 23 6 1.4959 -3.2320 -4.2945 24 6 0.2121 -2.5312 -4.7472 25 8 0.5277 -1.5842 -5.7714 26 6 1.4682 -0.5870 -5.3634 27 6 2.7647 -1.2681 -4.9170 28 6 1.8970 -2.0331 -1.2886 29 1 -0.3633 -0.0653 1.0256 30 1 -0.3633 0.9208 -0.4563 31 1 -0.3633 -0.8556 -0.5692 32 1 1.7467 4.2312 -0.9803 33 1 0.6983 -2.3279 1.1272 34 1 1.9568 -1.5561 2.1210 35 1 2.2597 -4.0089 2.0911 36 1 3.6194 -3.2028 1.2713 37 1 1.2029 -4.5088 -0.0629 38 1 2.8848 -5.0983 -0.0940 39 1 4.9110 -1.1172 -3.6917 40 1 5.5768 -2.2529 -2.4941 41 1 4.2039 -1.2062 -2.0604 42 1 5.2515 -4.1380 -4.1014 43 1 3.6470 -4.4342 -4.8127 44 1 4.5850 -3.0021 -5.2990 45 1 1.9179 -3.7928 -5.1285 46 1 1.2688 -3.9135 -3.4747 47 1 -0.2385 -2.0144 -3.8999 48 1 -0.4876 -3.2701 -5.1377 49 1 1.0540 -0.0136 -4.5340 50 1 1.6770 0.0809 -6.1991 51 1 3.4638 -0.5159 -4.5514 52 1 3.2076 -1.7973 -5.7606 53 1 2.2963 -1.4824 -2.1403 54 1 0.8188 -2.1487 -1.3985 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001027615711.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:50:43 Heat of formation + Delta-G solvation = -43.103817 kcal Electronic energy + Delta-G solvation = -34450.947851 eV Core-core repulsion = 30423.835133 eV Total energy + Delta-G solvation = -4027.112718 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 339.231 amu Computer time = 1.25 seconds Orbital eigenvalues (eV) -42.20347 -40.25897 -39.09892 -37.59316 -36.66587 -33.95564 -33.35233 -32.99364 -32.18737 -30.81436 -28.41125 -27.99770 -27.73111 -26.72306 -25.41038 -25.02042 -23.76435 -22.41983 -21.50481 -20.66182 -19.58575 -18.88316 -18.58732 -17.38421 -17.27326 -17.16334 -16.71409 -16.40380 -16.08797 -15.89942 -15.80784 -15.65488 -15.26422 -15.21048 -14.96046 -14.90128 -14.31905 -14.12421 -14.07386 -13.93376 -13.60960 -13.55201 -13.48519 -13.15802 -13.01509 -12.90051 -12.83974 -12.57809 -12.40403 -12.36562 -12.22934 -12.05387 -11.98136 -11.83770 -11.70206 -11.61924 -11.42667 -11.36180 -10.85468 -10.65266 -10.51106 -9.65359 -9.26494 -8.63576 -8.13212 -5.54677 1.37254 1.46779 1.48708 1.60511 2.03545 2.48135 2.56606 2.88366 3.12226 3.21810 3.52455 3.78454 3.85719 3.90083 3.94612 4.02766 4.06279 4.08995 4.17158 4.21696 4.27272 4.31358 4.43088 4.49122 4.56855 4.57938 4.59713 4.62887 4.65841 4.70168 4.76979 4.79332 4.82194 4.83874 4.86386 4.92545 4.94638 5.01516 5.05630 5.08875 5.11595 5.18801 5.25141 5.48099 5.50753 5.69793 5.75456 5.80350 5.98350 6.10419 6.22851 6.44469 7.02721 7.14147 7.67505 8.09732 9.05709 Molecular weight = 339.23amu Principal moments of inertia in cm(-1) A = 0.009524 B = 0.006856 C = 0.004915 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2939.277024 B = 4083.108220 C = 5695.563085 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.111 3.889 2 N -0.608 5.608 3 C -0.252 4.252 4 H 0.037 0.963 5 C -0.019 4.019 6 N -0.953 5.953 7 Si 0.946 3.054 8 H -0.291 1.291 9 H -0.313 1.313 10 H -0.231 1.231 11 C 0.163 3.837 12 H 0.047 0.953 13 C -0.125 4.125 14 C -0.119 4.119 15 C 0.108 3.892 16 N -0.591 5.591 17 C 0.529 3.471 18 O -0.580 6.580 19 C 0.094 3.906 20 C -0.145 4.145 21 C -0.155 4.155 22 N -0.524 5.524 23 C 0.018 3.982 24 C 0.065 3.935 25 O -0.394 6.394 26 C 0.054 3.946 27 C 0.013 3.987 28 C 0.089 3.911 29 H 0.023 0.977 30 H 0.026 0.974 31 H 0.058 0.942 32 H 0.261 0.739 33 H 0.066 0.934 34 H 0.050 0.950 35 H 0.096 0.904 36 H 0.054 0.946 37 H 0.079 0.921 38 H 0.083 0.917 39 H 0.086 0.914 40 H 0.070 0.930 41 H 0.058 0.942 42 H 0.066 0.934 43 H 0.057 0.943 44 H 0.081 0.919 45 H 0.056 0.944 46 H 0.077 0.923 47 H 0.049 0.951 48 H 0.119 0.881 49 H 0.043 0.957 50 H 0.117 0.883 51 H 0.096 0.904 52 H 0.066 0.934 53 H 0.130 0.870 54 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.139 -15.509 -8.150 17.557 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.033 4.033 2 N -0.332 5.332 3 C -0.382 4.382 4 H 0.055 0.945 5 C -0.215 4.215 6 N -0.598 5.598 7 Si 0.775 3.225 8 H -0.219 1.219 9 H -0.243 1.243 10 H -0.154 1.154 11 C 0.056 3.944 12 H 0.065 0.935 13 C -0.164 4.164 14 C -0.157 4.157 15 C -0.014 4.014 16 N -0.321 5.321 17 C 0.317 3.683 18 O -0.460 6.460 19 C 0.002 3.998 20 C -0.202 4.202 21 C -0.214 4.214 22 N -0.250 5.250 23 C -0.109 4.109 24 C -0.012 4.012 25 O -0.313 6.313 26 C -0.023 4.023 27 C -0.114 4.114 28 C -0.035 4.035 29 H 0.041 0.959 30 H 0.044 0.956 31 H 0.076 0.924 32 H 0.070 0.930 33 H 0.085 0.915 34 H 0.069 0.931 35 H 0.115 0.885 36 H 0.073 0.927 37 H 0.098 0.902 38 H 0.101 0.899 39 H 0.105 0.895 40 H 0.088 0.912 41 H 0.077 0.923 42 H 0.085 0.915 43 H 0.076 0.924 44 H 0.100 0.900 45 H 0.075 0.925 46 H 0.095 0.905 47 H 0.067 0.933 48 H 0.137 0.863 49 H 0.061 0.939 50 H 0.135 0.865 51 H 0.114 0.886 52 H 0.084 0.916 53 H 0.147 0.853 54 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -1.215 -15.692 -7.936 17.626 hybrid contribution 0.010 0.341 -0.456 0.569 sum -1.205 -15.351 -8.392 17.537 Atomic orbital electron populations 1.21335 0.83946 0.99084 0.98927 1.44010 1.01030 1.01327 1.86818 1.18591 1.08624 0.88788 1.22179 0.94538 1.26099 1.00688 0.94776 0.99955 1.69990 1.49088 0.99098 1.41581 0.85887 0.77757 0.79108 0.79722 1.21932 1.24251 1.15388 1.20805 0.95113 0.84869 0.93602 0.93464 1.21928 1.00298 0.95675 0.98512 1.21811 1.00079 0.96033 0.97801 1.21720 1.01774 0.93582 0.84373 1.48182 1.45174 1.18013 1.20758 1.20534 0.77439 0.86640 0.83653 1.90638 1.54740 1.21543 1.79048 1.21246 0.91049 0.94153 0.93382 1.22001 0.97868 0.97473 1.02862 1.22147 1.01553 1.00049 0.97619 1.62729 1.10554 1.16680 1.35056 1.22819 0.93828 0.94278 1.00017 1.22743 0.95474 0.91826 0.91177 1.87942 1.62901 1.41822 1.38591 1.22876 0.88133 0.90420 1.00821 1.22942 0.98709 0.96449 0.93303 1.22861 0.97371 0.81769 1.01472 0.95873 0.95607 0.92350 0.93037 0.91494 0.93105 0.88538 0.92748 0.90246 0.89851 0.89486 0.91152 0.92265 0.91455 0.92386 0.90020 0.92539 0.90461 0.93258 0.86288 0.93906 0.86528 0.88596 0.91611 0.85275 0.92641 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.11 4.36 8.35 127.77 1.07 5.42 16 2 N -0.61 -26.34 2.37 -703.16 -1.67 -28.01 16 3 C -0.25 -13.55 9.85 84.03 0.83 -12.73 16 4 H 0.04 2.23 8.06 -2.91 -0.02 2.20 16 5 C -0.02 -1.06 5.32 84.86 0.45 -0.61 16 6 N -0.95 -57.92 13.97 21.65 0.30 -57.62 16 7 Si 0.95 43.52 24.65 68.60 1.69 45.21 16 8 H -0.29 -13.31 6.71 99.48 0.67 -12.64 16 9 H -0.31 -14.80 7.11 99.48 0.71 -14.09 16 10 H -0.23 -9.51 5.75 99.48 0.57 -8.94 16 11 C 0.16 5.84 2.68 44.93 0.12 5.96 16 12 H 0.05 1.90 7.61 -2.39 -0.02 1.88 16 13 C -0.12 -3.71 5.09 30.62 0.16 -3.55 16 14 C -0.12 -2.86 6.08 30.67 0.19 -2.67 16 15 C 0.11 2.64 6.43 86.36 0.55 3.19 16 16 N -0.59 -16.67 2.84 -819.72 -2.33 -19.00 16 17 C 0.53 15.57 5.11 87.66 0.45 16.02 16 18 O -0.58 -19.67 15.42 -3.04 -0.05 -19.72 16 19 C 0.09 2.37 0.29 2.78 0.00 2.38 16 20 C -0.14 -3.71 7.88 71.98 0.57 -3.14 16 21 C -0.15 -3.41 7.17 71.98 0.52 -2.90 16 22 N -0.52 -13.06 1.45 -849.92 -1.23 -14.29 16 23 C 0.02 0.42 4.74 86.32 0.41 0.83 16 24 C 0.06 1.45 7.01 72.02 0.50 1.95 16 25 O -0.39 -10.07 10.83 -148.98 -1.61 -11.69 16 26 C 0.05 1.35 7.01 72.02 0.50 1.86 16 27 C 0.01 0.30 4.87 86.32 0.42 0.72 16 28 C 0.09 2.78 4.22 86.22 0.36 3.15 16 29 H 0.02 0.87 8.14 -2.39 -0.02 0.85 16 30 H 0.03 1.12 3.37 -2.39 -0.01 1.11 16 31 H 0.06 1.93 6.53 -2.39 -0.02 1.91 16 32 H 0.26 15.10 8.31 -92.71 -0.77 14.33 16 33 H 0.07 1.86 7.64 -2.39 -0.02 1.84 16 34 H 0.05 1.65 8.14 -2.38 -0.02 1.63 16 35 H 0.10 1.84 8.14 -2.39 -0.02 1.82 16 36 H 0.05 1.43 8.14 -2.38 -0.02 1.41 16 37 H 0.08 1.70 8.14 -2.39 -0.02 1.68 16 38 H 0.08 2.13 7.02 -2.39 -0.02 2.11 16 39 H 0.09 1.92 6.31 -2.39 -0.02 1.90 16 40 H 0.07 1.72 8.14 -2.39 -0.02 1.70 16 41 H 0.06 1.84 6.12 -2.39 -0.01 1.83 16 42 H 0.07 1.56 7.95 -2.39 -0.02 1.54 16 43 H 0.06 1.32 6.47 -2.39 -0.02 1.30 16 44 H 0.08 1.49 6.52 -2.39 -0.02 1.48 16 45 H 0.06 1.22 6.46 -2.39 -0.02 1.21 16 46 H 0.08 1.86 6.88 -2.39 -0.02 1.85 16 47 H 0.05 1.23 8.14 -2.39 -0.02 1.21 16 48 H 0.12 2.07 8.14 -2.39 -0.02 2.05 16 49 H 0.04 1.29 6.49 -2.38 -0.02 1.28 16 50 H 0.12 2.41 8.14 -2.39 -0.02 2.39 16 51 H 0.10 2.20 6.13 -2.38 -0.01 2.18 16 52 H 0.07 1.29 6.50 -2.39 -0.02 1.28 16 53 H 0.13 4.33 3.54 -2.38 -0.01 4.32 16 54 H 0.06 1.72 6.62 -2.39 -0.02 1.70 16 Total: -1.00 -65.83 381.02 2.92 -62.91 By element: Atomic # 1 Polarization: 25.60 SS G_CDS: 0.72 Total: 26.32 kcal Atomic # 6 Polarization: 8.79 SS G_CDS: 7.10 Total: 15.89 kcal Atomic # 7 Polarization: -113.99 SS G_CDS: -4.93 Total: -118.92 kcal Atomic # 8 Polarization: -29.75 SS G_CDS: -1.66 Total: -31.41 kcal Atomic # 14 Polarization: 43.52 SS G_CDS: 1.69 Total: 45.21 kcal Total: -65.83 2.92 -62.91 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001027615711.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.807 kcal (2) G-P(sol) polarization free energy of solvation -65.830 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.023 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.919 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.911 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.104 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.25 seconds