Wall clock time and date at job start Sat Apr 11 2020 05:50:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52997 * 109.47493 * 2 1 4 4 C 1.50702 * 109.47155 * 239.99802 * 2 1 3 5 5 O 1.21284 * 120.00062 * 25.00236 * 4 2 1 6 6 N 1.34773 * 120.00098 * 205.00114 * 4 2 1 7 7 C 1.46498 * 120.00131 * 180.02562 * 6 4 2 8 8 H 1.08999 * 109.36088 * 324.72796 * 7 6 4 9 9 C 1.54844 * 109.36270 * 205.00023 * 7 6 4 10 10 C 1.50128 * 110.81621 * 200.92776 * 9 7 6 11 11 C 1.52529 * 105.41284 * 97.68437 * 10 9 7 12 12 C 1.46239 * 114.27424 * 270.58826 * 11 10 9 13 13 N 1.50172 * 107.53135 * 58.41196 * 12 11 10 14 14 C 1.36937 * 120.53620 * 109.56966 * 13 12 11 15 15 H 1.08000 * 119.99906 * 211.16218 * 14 13 12 16 16 C 1.38816 * 120.00285 * 31.15637 * 14 13 12 17 17 N 1.31616 * 119.99542 * 19.52984 * 16 14 13 18 18 Si 1.86790 * 120.00122 * 199.52707 * 16 14 13 19 19 H 1.48502 * 109.46977 * 94.73938 * 18 16 14 20 20 H 1.48498 * 109.47235 * 214.74082 * 18 16 14 21 21 H 1.48503 * 109.47572 * 334.74129 * 18 16 14 22 22 C 1.43432 * 118.92622 * 289.58678 * 13 12 11 23 23 N 1.46900 * 109.47146 * 119.99889 * 2 1 3 24 24 C 1.47017 * 110.99885 * 63.63591 * 23 2 1 25 25 C 1.53102 * 109.25813 * 177.60883 * 24 23 2 26 26 O 1.43013 * 109.25895 * 56.84775 * 25 24 23 27 27 C 1.43010 * 113.73741 * 301.33137 * 26 25 24 28 28 C 1.47013 * 111.00110 * 300.00293 * 23 2 1 29 29 H 1.08995 * 109.46956 * 300.00364 * 1 2 3 30 30 H 1.09000 * 109.46666 * 60.00306 * 1 2 3 31 31 H 1.08995 * 109.46901 * 179.97438 * 1 2 3 32 32 H 1.09002 * 109.47794 * 179.97438 * 3 2 1 33 33 H 1.08999 * 109.47178 * 300.00017 * 3 2 1 34 34 H 1.09005 * 109.47369 * 59.99768 * 3 2 1 35 35 H 0.96999 * 120.00201 * 0.02562 * 6 4 2 36 36 H 1.09006 * 109.20757 * 321.27315 * 9 7 6 37 37 H 1.09003 * 109.21007 * 80.62298 * 9 7 6 38 38 H 1.08997 * 110.24412 * 216.65003 * 10 9 7 39 39 H 1.08994 * 110.25154 * 338.56641 * 10 9 7 40 40 H 1.08997 * 108.52186 * 31.83004 * 11 10 9 41 41 H 1.08997 * 108.52142 * 149.50454 * 11 10 9 42 42 H 1.09000 * 109.84386 * 177.91542 * 12 11 10 43 43 H 1.08994 * 109.84975 * 298.90148 * 12 11 10 44 44 H 0.97004 * 119.99835 * 180.02562 * 17 16 14 45 45 H 1.08999 * 108.16060 * 329.85446 * 22 13 12 46 46 H 1.08998 * 108.15984 * 213.28205 * 22 13 12 47 47 H 1.09001 * 109.50626 * 297.54310 * 24 23 2 48 48 H 1.08997 * 109.50656 * 57.67297 * 24 23 2 49 49 H 1.09002 * 109.50449 * 296.91143 * 25 24 23 50 50 H 1.09002 * 109.50369 * 176.78155 * 25 24 23 51 51 H 1.08999 * 109.50753 * 298.73300 * 27 26 25 52 52 H 1.09004 * 109.50754 * 178.60769 * 27 26 25 53 53 H 1.09000 * 109.50305 * 302.32326 * 28 23 2 54 54 H 1.08996 * 109.50673 * 62.45356 * 28 23 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 2.0324 -0.7105 -1.2305 5 8 1.3370 -0.7706 -2.2224 6 7 3.2543 -1.2790 -1.2287 7 6 3.7429 -1.9692 -2.4250 8 1 2.9094 -2.4668 -2.9208 9 6 4.7992 -3.0240 -2.0137 10 6 5.6743 -3.3851 -3.1789 11 6 6.9344 -2.5412 -3.0164 12 6 6.8675 -1.2305 -3.6617 13 7 5.6971 -0.4960 -3.0736 14 6 5.8938 0.5763 -2.2449 15 1 5.1853 0.7873 -1.4576 16 6 7.0038 1.3919 -2.4167 17 7 7.6487 1.3925 -3.5640 18 14 7.5820 2.4888 -1.0197 19 1 8.6465 1.7934 -0.2525 20 1 8.1201 3.7563 -1.5756 21 1 6.4392 2.7886 -0.1201 22 6 4.3700 -0.9359 -3.3938 23 7 2.0197 -0.6925 1.1994 24 6 1.6207 -2.1074 1.1907 25 6 2.2006 -2.8033 2.4250 26 8 1.7570 -2.1229 3.6021 27 6 2.1289 -0.7426 3.6439 28 6 1.5483 -0.0259 2.4220 29 1 -0.3633 0.5139 0.8899 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3633 -1.0276 -0.0005 32 1 3.1301 1.4425 0.0005 33 1 1.6768 1.9563 -0.8900 34 1 1.6768 1.9564 0.8900 35 1 3.8103 -1.2313 -0.4353 36 1 5.4176 -2.6188 -1.2127 37 1 4.2913 -3.9198 -1.6562 38 1 5.9241 -4.4457 -3.1485 39 1 5.1736 -3.1428 -4.1162 40 1 7.1178 -2.3942 -1.9521 41 1 7.7758 -3.0902 -3.4391 42 1 7.7864 -0.6764 -3.4700 43 1 6.7257 -1.3535 -4.7354 44 1 8.4246 1.9622 -3.6840 45 1 4.3887 -1.3738 -4.3918 46 1 3.7203 -0.0613 -3.4245 47 1 0.5332 -2.1790 1.2098 48 1 2.0019 -2.5875 0.2894 49 1 3.2894 -2.7786 2.3788 50 1 1.8602 -3.8384 2.4528 51 1 3.2156 -0.6580 3.6332 52 1 1.7368 -0.2874 4.5534 53 1 1.8767 1.0135 2.4196 54 1 0.4597 -0.0642 2.4608 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001034442388.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:50:53 Heat of formation + Delta-G solvation = -63.364837 kcal Electronic energy + Delta-G solvation = -33302.545207 eV Core-core repulsion = 29274.553905 eV Total energy + Delta-G solvation = -4027.991302 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 339.231 amu Computer time = 1.25 seconds Orbital eigenvalues (eV) -41.83658 -40.23032 -39.30084 -37.41677 -35.85080 -34.92832 -32.99348 -32.79089 -32.23328 -31.45357 -28.42329 -28.00448 -27.56630 -26.10866 -25.13980 -24.69406 -23.54729 -21.86464 -21.35297 -20.76214 -20.05544 -18.61911 -18.47586 -17.35940 -16.98550 -16.94346 -16.71188 -16.42559 -16.01774 -15.94492 -15.83722 -15.51121 -15.42584 -15.22503 -14.97398 -14.82066 -14.29670 -13.85330 -13.73710 -13.50959 -13.41538 -13.31298 -13.16123 -13.02101 -12.99845 -12.84055 -12.72228 -12.52798 -12.47445 -12.36619 -12.27870 -12.03199 -11.93637 -11.61366 -11.48214 -11.42442 -11.23856 -11.03893 -10.75264 -10.56258 -10.48665 -9.94415 -9.44121 -8.51225 -7.81018 -5.28511 1.46850 1.49067 1.56956 1.64625 2.34337 2.54267 2.59574 2.97972 3.30066 3.56631 3.63438 3.84735 3.90220 3.94453 3.99443 4.04973 4.13116 4.15044 4.29954 4.33750 4.35720 4.50261 4.52724 4.53722 4.60343 4.61322 4.65157 4.69617 4.74184 4.79620 4.81244 4.87844 4.89062 4.93394 5.02675 5.04632 5.13237 5.17877 5.22487 5.26992 5.31574 5.45374 5.52183 5.69682 5.71755 5.75609 5.81970 5.84103 5.89538 6.20376 6.49474 6.73039 7.17976 7.36245 7.91619 8.46149 9.23587 Molecular weight = 339.23amu Principal moments of inertia in cm(-1) A = 0.010754 B = 0.004519 C = 0.004015 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2603.170825 B = 6195.177585 C = 6971.895892 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C 0.099 3.901 3 C -0.135 4.135 4 C 0.522 3.478 5 O -0.589 6.589 6 N -0.689 5.689 7 C 0.126 3.874 8 H 0.073 0.927 9 C -0.099 4.099 10 C -0.104 4.104 11 C -0.124 4.124 12 C 0.153 3.847 13 N -0.589 5.589 14 C -0.238 4.238 15 H 0.063 0.937 16 C -0.049 4.049 17 N -0.930 5.930 18 Si 0.954 3.046 19 H -0.287 1.287 20 H -0.303 1.303 21 H -0.266 1.266 22 C 0.157 3.843 23 N -0.525 5.525 24 C 0.010 3.990 25 C 0.070 3.930 26 O -0.400 6.400 27 C 0.063 3.937 28 C 0.013 3.987 29 H 0.086 0.914 30 H 0.059 0.941 31 H 0.054 0.946 32 H 0.056 0.944 33 H 0.055 0.945 34 H 0.095 0.905 35 H 0.409 0.591 36 H 0.062 0.938 37 H 0.074 0.926 38 H 0.087 0.913 39 H 0.057 0.943 40 H 0.049 0.951 41 H 0.055 0.945 42 H 0.067 0.933 43 H 0.007 0.993 44 H 0.247 0.753 45 H 0.029 0.971 46 H 0.003 0.997 47 H 0.045 0.955 48 H 0.080 0.920 49 H 0.061 0.939 50 H 0.112 0.888 51 H 0.059 0.941 52 H 0.118 0.882 53 H 0.102 0.898 54 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.723 -8.485 13.560 19.258 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C 0.006 3.994 3 C -0.192 4.192 4 C 0.309 3.691 5 O -0.470 6.470 6 N -0.337 5.337 7 C 0.018 3.982 8 H 0.091 0.909 9 C -0.137 4.137 10 C -0.142 4.142 11 C -0.163 4.163 12 C 0.029 3.971 13 N -0.310 5.310 14 C -0.369 4.369 15 H 0.080 0.920 16 C -0.244 4.244 17 N -0.577 5.577 18 Si 0.783 3.217 19 H -0.214 1.214 20 H -0.230 1.230 21 H -0.190 1.190 22 C 0.028 3.972 23 N -0.252 5.252 24 C -0.118 4.118 25 C -0.007 4.007 26 O -0.319 6.319 27 C -0.013 4.013 28 C -0.115 4.115 29 H 0.105 0.895 30 H 0.078 0.922 31 H 0.073 0.927 32 H 0.075 0.925 33 H 0.074 0.926 34 H 0.114 0.886 35 H 0.246 0.754 36 H 0.081 0.919 37 H 0.093 0.907 38 H 0.105 0.895 39 H 0.075 0.925 40 H 0.068 0.932 41 H 0.074 0.926 42 H 0.085 0.915 43 H 0.025 0.975 44 H 0.056 0.944 45 H 0.048 0.952 46 H 0.022 0.978 47 H 0.063 0.937 48 H 0.098 0.902 49 H 0.080 0.920 50 H 0.130 0.870 51 H 0.077 0.923 52 H 0.136 0.864 53 H 0.120 0.880 54 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -10.638 -8.498 12.944 18.786 hybrid contribution 0.111 1.196 -0.026 1.202 sum -10.526 -7.302 12.918 18.193 Atomic orbital electron populations 1.22175 0.93617 1.02523 1.03330 1.21179 0.94925 0.95325 0.87923 1.21823 1.01756 0.92336 1.03322 1.20661 0.81486 0.77889 0.89111 1.90648 1.58557 1.61151 1.36624 1.46011 1.16637 1.54471 1.16619 1.22533 0.95815 0.93308 0.86555 0.90885 1.21574 0.96521 0.96863 0.98735 1.20931 0.95573 0.99538 0.98153 1.20895 0.98102 0.96434 1.00880 1.20220 0.92377 0.91180 0.93301 1.44057 0.99751 1.31829 1.55400 1.19294 1.07865 1.02849 1.06871 0.91950 1.25685 1.01545 0.99260 0.97901 1.70170 1.22092 1.42069 1.23339 0.85439 0.78521 0.77837 0.79865 1.21373 1.23013 1.18997 1.20663 0.86772 0.94846 0.94951 1.62435 1.59191 1.02241 1.01322 1.22932 0.99296 0.89019 1.00551 1.22685 0.99115 0.96324 0.82588 1.87954 1.78915 1.23519 1.41521 1.22801 0.99856 0.80881 0.97799 1.22986 0.99172 1.00159 0.89155 0.89521 0.92152 0.92681 0.92523 0.92639 0.88636 0.75408 0.91939 0.90730 0.89478 0.92467 0.93185 0.92636 0.91523 0.97465 0.94408 0.95230 0.97814 0.93699 0.90172 0.92047 0.86997 0.92298 0.86412 0.88015 0.92828 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.68 7.31 71.98 0.53 -3.16 16 2 C 0.10 2.57 0.64 2.78 0.00 2.57 16 3 C -0.13 -3.51 8.23 71.98 0.59 -2.92 16 4 C 0.52 17.50 5.24 87.66 0.46 17.96 16 5 O -0.59 -24.01 15.76 -3.04 -0.05 -24.06 16 6 N -0.69 -22.31 3.98 -436.49 -1.74 -24.05 16 7 C 0.13 4.30 2.91 46.27 0.13 4.44 16 8 H 0.07 2.55 7.58 -2.39 -0.02 2.53 16 9 C -0.10 -2.84 5.23 30.30 0.16 -2.68 16 10 C -0.10 -3.02 5.75 29.51 0.17 -2.85 16 11 C -0.12 -4.40 5.20 28.36 0.15 -4.26 16 12 C 0.15 7.00 5.37 83.58 0.45 7.45 16 13 N -0.59 -28.26 2.56 -707.83 -1.81 -30.07 16 14 C -0.24 -12.51 9.54 84.03 0.80 -11.71 16 15 H 0.06 3.24 7.90 -2.91 -0.02 3.21 16 16 C -0.05 -2.65 4.93 84.86 0.42 -2.23 16 17 N -0.93 -54.20 11.25 21.65 0.24 -53.96 16 18 Si 0.95 43.87 29.60 68.60 2.03 45.90 16 19 H -0.29 -12.98 7.11 99.48 0.71 -12.27 16 20 H -0.30 -14.33 7.11 99.48 0.71 -13.62 16 21 H -0.27 -11.51 7.11 99.48 0.71 -10.80 16 22 C 0.16 6.82 4.78 87.60 0.42 7.24 16 23 N -0.53 -11.36 3.83 -849.92 -3.25 -14.61 16 24 C 0.01 0.21 4.86 86.31 0.42 0.63 16 25 C 0.07 1.25 7.01 72.02 0.50 1.76 16 26 O -0.40 -7.95 10.83 -148.98 -1.61 -9.56 16 27 C 0.06 1.02 7.01 72.02 0.50 1.53 16 28 C 0.01 0.21 4.87 86.31 0.42 0.63 16 29 H 0.09 1.58 6.46 -2.39 -0.02 1.56 16 30 H 0.06 1.60 7.87 -2.39 -0.02 1.58 16 31 H 0.05 1.32 6.54 -2.39 -0.02 1.31 16 32 H 0.06 1.72 8.14 -2.39 -0.02 1.70 16 33 H 0.05 1.59 8.14 -2.39 -0.02 1.57 16 34 H 0.10 1.85 6.35 -2.38 -0.02 1.84 16 35 H 0.41 12.74 7.76 -92.71 -0.72 12.03 16 36 H 0.06 1.95 6.59 -2.38 -0.02 1.93 16 37 H 0.07 1.73 8.14 -2.39 -0.02 1.71 16 38 H 0.09 2.00 8.14 -2.39 -0.02 1.98 16 39 H 0.06 1.78 6.30 -2.39 -0.02 1.77 16 40 H 0.05 1.85 6.93 -2.39 -0.02 1.83 16 41 H 0.06 1.76 8.14 -2.39 -0.02 1.74 16 42 H 0.07 3.52 5.65 -2.39 -0.01 3.51 16 43 H 0.01 0.33 8.12 -2.39 -0.02 0.31 16 44 H 0.25 14.04 8.31 -92.70 -0.77 13.26 16 45 H 0.03 1.28 6.89 -2.39 -0.02 1.26 16 46 H 0.00 0.17 7.84 -2.39 -0.02 0.16 16 47 H 0.04 0.95 6.52 -2.39 -0.02 0.93 16 48 H 0.08 1.84 6.22 -2.39 -0.01 1.82 16 49 H 0.06 1.11 8.14 -2.39 -0.02 1.10 16 50 H 0.11 1.62 8.14 -2.39 -0.02 1.60 16 51 H 0.06 0.99 8.14 -2.39 -0.02 0.98 16 52 H 0.12 1.38 8.14 -2.39 -0.02 1.36 16 53 H 0.10 1.55 6.19 -2.39 -0.01 1.53 16 54 H 0.05 0.88 6.44 -2.39 -0.02 0.86 16 Total: -1.00 -65.84 393.73 0.11 -65.73 By element: Atomic # 1 Polarization: 30.10 SS G_CDS: 0.17 Total: 30.28 kcal Atomic # 6 Polarization: 8.28 SS G_CDS: 6.13 Total: 14.40 kcal Atomic # 7 Polarization: -116.13 SS G_CDS: -6.56 Total: -122.69 kcal Atomic # 8 Polarization: -31.96 SS G_CDS: -1.66 Total: -33.62 kcal Atomic # 14 Polarization: 43.87 SS G_CDS: 2.03 Total: 45.90 kcal Total: -65.84 0.11 -65.73 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001034442388.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.362 kcal (2) G-P(sol) polarization free energy of solvation -65.842 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.480 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.115 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.727 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.365 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.25 seconds