Wall clock time and date at job start Sat Apr 11 2020 05:51:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52998 * 109.46818 * 2 1 4 4 H 1.09002 * 109.49918 * 55.00052 * 3 2 1 5 5 C 1.53187 * 109.49842 * 294.93393 * 3 2 1 6 6 N 1.46931 * 108.77858 * 185.38430 * 5 3 2 7 7 C 1.34772 * 120.63173 * 233.63340 * 6 5 3 8 8 O 1.21282 * 119.99859 * 359.97438 * 7 6 5 9 9 C 1.50701 * 119.99883 * 179.97438 * 7 6 5 10 10 C 1.53003 * 109.46918 * 179.97438 * 9 7 6 11 11 N 1.46896 * 109.46849 * 179.97438 * 10 9 7 12 12 C 1.47016 * 111.00357 * 293.63596 * 11 10 9 13 13 C 1.53095 * 109.25851 * 177.60813 * 12 11 10 14 14 O 1.43015 * 109.26174 * 56.84896 * 13 12 11 15 15 C 1.43010 * 113.73797 * 301.33026 * 14 13 12 16 16 C 1.47015 * 111.00114 * 170.00111 * 11 10 9 17 17 C 1.46925 * 118.73466 * 53.60925 * 6 5 3 18 18 C 1.53194 * 108.77661 * 306.39203 * 17 6 5 19 19 C 1.53036 * 109.49372 * 175.06532 * 3 2 1 20 20 H 1.09003 * 109.46509 * 61.32997 * 19 3 2 21 21 N 1.46501 * 109.46507 * 301.36782 * 19 3 2 22 22 C 1.36935 * 120.00647 * 155.00025 * 21 19 3 23 23 H 1.08002 * 119.99588 * 359.97438 * 22 21 19 24 24 C 1.38814 * 120.00113 * 180.02562 * 22 21 19 25 25 N 1.31613 * 120.00086 * 359.97438 * 24 22 21 26 26 Si 1.86801 * 119.99772 * 180.02562 * 24 22 21 27 27 H 1.48500 * 109.47270 * 359.97438 * 26 24 22 28 28 H 1.48497 * 109.47005 * 119.99692 * 26 24 22 29 29 H 1.48496 * 109.47031 * 239.99872 * 26 24 22 30 30 H 1.08997 * 109.47243 * 59.99712 * 1 2 3 31 31 H 1.08996 * 109.47553 * 180.02562 * 1 2 3 32 32 H 1.09001 * 109.47108 * 299.99988 * 1 2 3 33 33 H 1.08991 * 109.46805 * 239.99564 * 2 1 3 34 34 H 1.09000 * 109.46978 * 119.99829 * 2 1 3 35 35 H 1.09004 * 109.58908 * 305.17142 * 5 3 2 36 36 H 1.09007 * 109.58837 * 65.59504 * 5 3 2 37 37 H 1.08993 * 109.46834 * 299.99901 * 9 7 6 38 38 H 1.08999 * 109.47079 * 59.99976 * 9 7 6 39 39 H 1.08994 * 109.47389 * 300.00314 * 10 9 7 40 40 H 1.08999 * 109.46993 * 60.00258 * 10 9 7 41 41 H 1.09001 * 109.50886 * 297.54608 * 12 11 10 42 42 H 1.09001 * 109.50202 * 57.67599 * 12 11 10 43 43 H 1.09001 * 109.51036 * 296.91238 * 13 12 11 44 44 H 1.09002 * 109.50490 * 176.78689 * 13 12 11 45 45 H 1.08999 * 109.51003 * 298.73668 * 15 14 13 46 46 H 1.08995 * 109.54252 * 178.62061 * 15 14 13 47 47 H 1.09002 * 109.50532 * 302.33161 * 16 11 10 48 48 H 1.09005 * 109.50351 * 62.45852 * 16 11 10 49 49 H 1.08995 * 109.58986 * 66.17814 * 17 6 5 50 50 H 1.09003 * 109.58612 * 186.60908 * 17 6 5 51 51 H 1.09002 * 109.49873 * 174.58798 * 18 17 6 52 52 H 1.08999 * 109.49823 * 294.65566 * 18 17 6 53 53 H 0.97000 * 119.99453 * 335.00255 * 21 19 3 54 54 H 0.96998 * 120.00182 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.6056 1.9820 0.8417 5 6 1.6364 2.1275 -1.3094 6 7 2.2423 3.4655 -1.3496 7 6 1.4820 4.5574 -1.5643 8 8 0.2858 4.4409 -1.7271 9 6 2.1182 5.9229 -1.6021 10 6 1.0424 6.9798 -1.8601 11 7 1.6625 8.3110 -1.8963 12 6 2.1964 8.6797 -0.5770 13 6 2.8844 10.0439 -0.6740 14 8 1.9518 11.0084 -1.1694 15 6 1.4124 10.6812 -2.4528 16 6 0.7095 9.3234 -2.3739 17 6 3.6926 3.5904 -1.1506 18 6 4.0731 2.8890 0.1571 19 6 3.5653 1.4450 0.1241 20 1 4.0001 0.9268 -0.7307 21 7 3.9557 0.7609 1.3593 22 6 5.1939 0.1851 1.4613 23 1 5.8826 0.2350 0.6308 24 6 5.5635 -0.4635 2.6316 25 7 4.7240 -0.5247 3.6434 26 14 7.2529 -1.2483 2.7708 27 1 8.0010 -1.0410 1.5049 28 1 7.9975 -0.6245 3.8941 29 1 7.1032 -2.7039 3.0241 30 1 -0.3633 0.5139 -0.8899 31 1 -0.3634 -1.0276 0.0005 32 1 -0.3633 0.5138 0.8900 33 1 1.8933 -0.5139 -0.8899 34 1 1.8933 -0.5138 0.8900 35 1 1.9935 1.5392 -2.1548 36 1 0.5509 2.2163 -1.3560 37 1 2.6040 6.1239 -0.6473 38 1 2.8591 5.9566 -2.4009 39 1 0.5569 6.7786 -2.8149 40 1 0.3013 6.9463 -1.0615 41 1 1.3805 8.7338 0.1437 42 1 2.9188 7.9299 -0.2543 43 1 3.7335 9.9759 -1.3541 44 1 3.2318 10.3473 0.3136 45 1 2.2186 10.6316 -3.1847 46 1 0.6953 11.4454 -2.7524 47 1 0.3464 9.0435 -3.3628 48 1 -0.1302 9.3879 -1.6819 49 1 4.2174 3.1214 -1.9829 50 1 3.9640 4.6445 -1.0922 51 1 5.1574 2.8907 0.2687 52 1 3.6201 3.4151 0.9973 53 1 3.3369 0.7158 2.1050 54 1 4.9824 -0.9776 4.4613 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001037940938.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:51:04 Heat of formation + Delta-G solvation = -93.599018 kcal Electronic energy + Delta-G solvation = -30765.502274 eV Core-core repulsion = 26736.199920 eV Total energy + Delta-G solvation = -4029.302355 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 339.231 amu Computer time = 1.17 seconds Orbital eigenvalues (eV) -41.42206 -40.46874 -39.18743 -36.99484 -36.17763 -35.33884 -33.43870 -32.65075 -32.01933 -31.05195 -30.06415 -28.06311 -26.52624 -25.20915 -25.01192 -24.49720 -23.32717 -22.18988 -21.37182 -21.10881 -19.95796 -19.04138 -18.41868 -17.30342 -17.19268 -17.01183 -16.76734 -16.69209 -16.04816 -15.89906 -15.77377 -15.64122 -15.42268 -15.09637 -14.75109 -14.71536 -14.66141 -14.33520 -14.15006 -13.67005 -13.55644 -13.39555 -13.16948 -13.03760 -12.91331 -12.84335 -12.64950 -12.55676 -12.46806 -12.31559 -12.11854 -12.04129 -11.86108 -11.82745 -11.58410 -11.52370 -11.46689 -11.08681 -10.94931 -10.73329 -10.66264 -9.64700 -9.48199 -8.94982 -7.90414 -5.17692 1.48708 1.49438 1.58633 1.60819 1.96656 2.58436 2.72029 2.97809 3.43124 3.59912 3.75694 3.78109 3.85037 3.93895 3.99570 4.04479 4.06102 4.10892 4.20892 4.26351 4.33213 4.35551 4.36489 4.43356 4.47045 4.51026 4.62119 4.65261 4.74486 4.77102 4.79928 4.82598 4.83603 4.87081 4.89394 4.92113 4.94781 5.01606 5.04241 5.07096 5.16623 5.29343 5.38533 5.47520 5.53072 5.59380 5.67567 5.86117 5.90000 6.19380 6.31055 6.43978 7.15098 7.37660 8.14079 8.36945 9.33355 Molecular weight = 339.23amu Principal moments of inertia in cm(-1) A = 0.013692 B = 0.002419 C = 0.002143 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2044.539324 B =11571.819054 C =13060.695205 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.108 4.108 3 C -0.092 4.092 4 H 0.049 0.951 5 C 0.125 3.875 6 N -0.607 5.607 7 C 0.513 3.487 8 O -0.588 6.588 9 C -0.127 4.127 10 C 0.079 3.921 11 N -0.536 5.536 12 C 0.010 3.990 13 C 0.063 3.937 14 O -0.409 6.409 15 C 0.064 3.936 16 C 0.016 3.984 17 C 0.114 3.886 18 C -0.143 4.143 19 C 0.178 3.822 20 H 0.047 0.953 21 N -0.731 5.731 22 C -0.226 4.226 23 H 0.079 0.921 24 C -0.078 4.078 25 N -0.971 5.971 26 Si 0.966 3.034 27 H -0.263 1.263 28 H -0.298 1.298 29 H -0.299 1.299 30 H 0.063 0.937 31 H 0.060 0.940 32 H 0.043 0.957 33 H 0.064 0.936 34 H 0.046 0.954 35 H 0.080 0.920 36 H 0.084 0.916 37 H 0.106 0.894 38 H 0.124 0.876 39 H 0.078 0.922 40 H 0.023 0.977 41 H 0.030 0.970 42 H 0.101 0.899 43 H 0.068 0.932 44 H 0.110 0.890 45 H 0.067 0.933 46 H 0.113 0.887 47 H 0.099 0.901 48 H 0.032 0.968 49 H 0.086 0.914 50 H 0.111 0.889 51 H 0.068 0.932 52 H 0.045 0.955 53 H 0.370 0.630 54 H 0.248 0.752 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.265 19.189 -15.399 25.161 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.146 4.146 3 C -0.112 4.112 4 H 0.068 0.932 5 C 0.002 3.998 6 N -0.339 5.339 7 C 0.303 3.697 8 O -0.469 6.469 9 C -0.166 4.166 10 C -0.049 4.049 11 N -0.261 5.261 12 C -0.118 4.118 13 C -0.014 4.014 14 O -0.328 6.328 15 C -0.013 4.013 16 C -0.112 4.112 17 C -0.008 4.008 18 C -0.184 4.184 19 C 0.069 3.931 20 H 0.065 0.935 21 N -0.370 5.370 22 C -0.358 4.358 23 H 0.096 0.904 24 C -0.270 4.270 25 N -0.623 5.623 26 Si 0.796 3.204 27 H -0.188 1.188 28 H -0.225 1.225 29 H -0.227 1.227 30 H 0.082 0.918 31 H 0.079 0.921 32 H 0.063 0.937 33 H 0.083 0.917 34 H 0.065 0.935 35 H 0.098 0.902 36 H 0.102 0.898 37 H 0.124 0.876 38 H 0.142 0.858 39 H 0.097 0.903 40 H 0.042 0.958 41 H 0.049 0.951 42 H 0.119 0.881 43 H 0.086 0.914 44 H 0.128 0.872 45 H 0.085 0.915 46 H 0.131 0.869 47 H 0.117 0.883 48 H 0.050 0.950 49 H 0.104 0.896 50 H 0.129 0.871 51 H 0.087 0.913 52 H 0.063 0.937 53 H 0.201 0.799 54 H 0.056 0.944 Dipole moment (debyes) X Y Z Total from point charges -5.351 19.222 -15.792 25.446 hybrid contribution -0.074 -1.199 1.631 2.026 sum -5.425 18.023 -14.161 23.554 Atomic orbital electron populations 1.21774 0.95010 1.01865 1.01616 1.21360 0.95964 0.95366 1.01904 1.21617 0.95937 0.96322 0.97324 0.93241 1.21600 0.99216 0.82222 0.96737 1.48253 1.09169 1.06446 1.70032 1.21108 0.86404 0.87169 0.75055 1.90661 1.16658 1.87343 1.52222 1.21618 0.99916 0.89049 1.06044 1.21687 0.94440 0.87266 1.01540 1.62245 1.35985 1.01839 1.26054 1.22943 0.99935 0.99223 0.89720 1.22783 0.91212 0.86445 1.00935 1.87960 1.61288 1.47587 1.35933 1.22789 0.98321 0.95261 0.84932 1.22850 0.93846 0.92852 1.01664 1.21933 0.78530 1.02959 0.97389 1.22490 1.01390 0.97526 0.97013 1.20442 0.92222 0.91510 0.88878 0.93451 1.42606 1.15457 1.64992 1.13975 1.19623 0.92503 1.25388 0.98252 0.90357 1.25479 1.01527 1.03349 0.96659 1.69823 1.37019 1.50223 1.05216 0.85166 0.80328 0.77283 0.77579 1.18754 1.22538 1.22702 0.91779 0.92129 0.93742 0.91683 0.93539 0.90209 0.89816 0.87581 0.85754 0.90304 0.95840 0.95120 0.88083 0.91357 0.87227 0.91514 0.86901 0.88307 0.94961 0.89556 0.87093 0.91315 0.93662 0.79881 0.94359 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.96 9.67 71.98 0.70 -3.26 16 2 C -0.11 -3.47 5.31 30.59 0.16 -3.30 16 3 C -0.09 -2.93 1.92 -10.72 -0.02 -2.95 16 4 H 0.05 1.77 8.14 -2.39 -0.02 1.75 16 5 C 0.13 3.37 5.33 86.36 0.46 3.83 16 6 N -0.61 -14.84 2.97 -818.89 -2.43 -17.27 16 7 C 0.51 12.84 7.70 87.66 0.67 13.52 16 8 O -0.59 -19.06 15.39 -3.04 -0.05 -19.11 16 9 C -0.13 -2.18 3.98 29.85 0.12 -2.06 16 10 C 0.08 1.49 4.25 86.30 0.37 1.85 16 11 N -0.54 -8.66 4.73 -895.21 -4.23 -12.89 16 12 C 0.01 0.15 5.44 86.31 0.47 0.62 16 13 C 0.06 0.88 7.01 72.01 0.50 1.38 16 14 O -0.41 -7.25 10.83 -148.98 -1.61 -8.86 16 15 C 0.06 0.83 7.01 72.02 0.50 1.34 16 16 C 0.02 0.23 5.64 86.32 0.49 0.72 16 17 C 0.11 2.39 6.34 86.36 0.55 2.93 16 18 C -0.14 -4.31 5.66 30.70 0.17 -4.14 16 19 C 0.18 6.38 2.20 45.04 0.10 6.48 16 20 H 0.05 1.72 8.08 -2.39 -0.02 1.70 16 21 N -0.73 -34.69 4.33 -322.70 -1.40 -36.09 16 22 C -0.23 -11.83 9.93 84.03 0.83 -10.99 16 23 H 0.08 3.91 7.83 -2.91 -0.02 3.89 16 24 C -0.08 -4.36 5.50 84.86 0.47 -3.89 16 25 N -0.97 -58.56 13.06 21.65 0.28 -58.28 16 26 Si 0.97 45.05 29.55 68.60 2.03 47.08 16 27 H -0.26 -11.36 7.11 99.48 0.71 -10.65 16 28 H -0.30 -14.03 7.11 99.48 0.71 -13.32 16 29 H -0.30 -14.18 7.11 99.48 0.71 -13.48 16 30 H 0.06 1.56 6.70 -2.39 -0.02 1.55 16 31 H 0.06 1.51 8.14 -2.39 -0.02 1.49 16 32 H 0.04 1.26 8.14 -2.39 -0.02 1.24 16 33 H 0.06 1.96 8.14 -2.39 -0.02 1.95 16 34 H 0.05 1.85 7.22 -2.39 -0.02 1.83 16 35 H 0.08 1.93 8.14 -2.38 -0.02 1.92 16 36 H 0.08 2.42 5.72 -2.38 -0.01 2.40 16 37 H 0.11 1.60 6.07 -2.39 -0.01 1.58 16 38 H 0.12 1.63 7.94 -2.39 -0.02 1.61 16 39 H 0.08 1.57 8.00 -2.39 -0.02 1.55 16 40 H 0.02 0.54 8.08 -2.39 -0.02 0.52 16 41 H 0.03 0.55 8.14 -2.39 -0.02 0.54 16 42 H 0.10 1.29 6.38 -2.39 -0.02 1.27 16 43 H 0.07 0.85 8.14 -2.39 -0.02 0.83 16 44 H 0.11 1.23 8.14 -2.39 -0.02 1.21 16 45 H 0.07 0.79 8.14 -2.39 -0.02 0.77 16 46 H 0.11 1.07 8.14 -2.39 -0.02 1.05 16 47 H 0.10 1.20 8.09 -2.39 -0.02 1.18 16 48 H 0.03 0.55 8.14 -2.38 -0.02 0.53 16 49 H 0.09 1.58 8.14 -2.39 -0.02 1.56 16 50 H 0.11 1.65 5.93 -2.39 -0.01 1.63 16 51 H 0.07 2.19 8.14 -2.39 -0.02 2.17 16 52 H 0.04 1.48 8.14 -2.39 -0.02 1.46 16 53 H 0.37 19.51 7.51 -92.71 -0.70 18.81 16 54 H 0.25 14.60 8.31 -92.71 -0.77 13.83 16 Total: -1.00 -68.30 410.90 -0.70 -69.00 By element: Atomic # 1 Polarization: 34.18 SS G_CDS: 0.17 Total: 34.35 kcal Atomic # 6 Polarization: -4.47 SS G_CDS: 6.55 Total: 2.08 kcal Atomic # 7 Polarization: -116.75 SS G_CDS: -7.78 Total: -124.53 kcal Atomic # 8 Polarization: -26.31 SS G_CDS: -1.66 Total: -27.97 kcal Atomic # 14 Polarization: 45.05 SS G_CDS: 2.03 Total: 47.08 kcal Total: -68.30 -0.70 -69.00 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001037940938.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.604 kcal (2) G-P(sol) polarization free energy of solvation -68.300 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -92.904 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.695 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.995 kcal (6) G-S(sol) free energy of system = (1) + (5) -93.599 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.18 seconds