Wall clock time and date at job start Sat Apr 11 2020 05:51:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46506 * 1 3 3 C 1.34777 * 120.00264 * 2 1 4 4 O 1.21283 * 119.99750 * 180.02562 * 3 2 1 5 5 C 1.50702 * 119.99928 * 0.28128 * 3 2 1 6 6 C 1.52999 * 109.47188 * 84.72117 * 5 3 2 7 7 C 1.52997 * 109.46928 * 204.72229 * 5 3 2 8 8 N 1.46898 * 109.46986 * 324.71856 * 5 3 2 9 9 C 1.46848 * 111.00485 * 304.21427 * 8 5 3 10 10 C 1.53031 * 109.52456 * 174.15967 * 9 8 5 11 11 C 1.53117 * 109.28147 * 59.18006 * 10 9 8 12 12 C 1.53125 * 109.15647 * 302.34528 * 11 10 9 13 13 C 1.46844 * 110.99914 * 180.02562 * 8 5 3 14 14 C 1.46499 * 119.99537 * 180.02562 * 2 1 3 15 15 H 1.09004 * 110.64081 * 180.69781 * 14 2 1 16 16 C 1.54327 * 110.72125 * 303.83602 * 14 2 1 17 17 N 1.47324 * 107.11687 * 140.42895 * 16 14 2 18 18 C 1.36940 * 125.60871 * 181.18319 * 17 16 14 19 19 H 1.07998 * 120.00627 * 0.16765 * 18 17 16 20 20 C 1.38812 * 119.99345 * 180.16524 * 18 17 16 21 21 N 1.31617 * 120.00345 * 0.02562 * 20 18 17 22 22 Si 1.86800 * 119.99820 * 179.97438 * 20 18 17 23 23 H 1.48503 * 109.46965 * 60.00338 * 22 20 18 24 24 H 1.48501 * 109.47293 * 180.02562 * 22 20 18 25 25 H 1.48501 * 109.47415 * 300.00231 * 22 20 18 26 26 C 1.47424 * 108.73879 * 1.30587 * 17 16 14 27 27 C 1.54913 * 104.83121 * 335.71431 * 26 17 16 28 28 H 1.09004 * 111.00247 * 278.93979 * 27 26 17 29 29 O 1.42895 * 111.03755 * 155.09750 * 27 26 17 30 30 H 1.08998 * 109.46921 * 89.99095 * 1 2 3 31 31 H 1.08994 * 109.46996 * 209.99677 * 1 2 3 32 32 H 1.09001 * 109.46578 * 329.99540 * 1 2 3 33 33 H 1.08995 * 109.47098 * 60.00165 * 6 5 3 34 34 H 1.08994 * 109.47074 * 180.02562 * 6 5 3 35 35 H 1.08996 * 109.47245 * 300.00026 * 6 5 3 36 36 H 1.09005 * 109.47301 * 60.00064 * 7 5 3 37 37 H 1.09003 * 109.47146 * 179.97438 * 7 5 3 38 38 H 1.08995 * 109.47275 * 299.99783 * 7 5 3 39 39 H 1.09002 * 109.45763 * 294.17822 * 9 8 5 40 40 H 1.09001 * 109.46278 * 54.14455 * 9 8 5 41 41 H 1.08999 * 109.50551 * 299.23825 * 10 9 8 42 42 H 1.08998 * 109.50140 * 179.11685 * 10 9 8 43 43 H 1.08993 * 109.52693 * 182.44238 * 11 10 9 44 44 H 1.09004 * 109.57679 * 62.27600 * 11 10 9 45 45 H 1.08998 * 109.49987 * 297.70974 * 12 11 10 46 46 H 1.09002 * 109.53461 * 177.61225 * 12 11 10 47 47 H 1.08997 * 109.46475 * 305.85354 * 13 8 5 48 48 H 1.08995 * 109.46563 * 65.83868 * 13 8 5 49 49 H 1.08996 * 109.88543 * 259.98065 * 16 14 2 50 50 H 1.08997 * 109.87663 * 21.14336 * 16 14 2 51 51 H 0.97003 * 120.00562 * 179.97438 * 21 20 18 52 52 H 1.08997 * 110.36672 * 216.87944 * 26 17 16 53 53 H 1.09002 * 110.36545 * 94.55217 * 26 17 16 54 54 H 0.96700 * 113.99786 * 67.78200 * 29 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.1390 1.1672 0.0000 4 8 3.3518 1.1671 -0.0005 5 6 1.3855 2.4723 0.0064 6 6 1.0217 2.8441 1.4453 7 6 2.2628 3.5705 -0.5979 8 7 0.1582 2.3330 -0.7887 9 6 0.4626 1.8789 -2.1516 10 6 -0.8422 1.6058 -2.9031 11 6 -1.6781 2.8879 -2.9472 12 6 -1.9402 3.3663 -1.5164 13 6 -0.6032 3.5885 -0.8055 14 6 2.1974 -1.2688 -0.0006 15 1 3.2729 -1.0916 0.0119 16 6 1.7743 -2.1440 1.1980 17 7 1.7029 -3.5343 0.7159 18 6 1.3395 -4.6207 1.4661 19 1 1.0715 -4.4946 2.5047 20 6 1.3154 -5.8841 0.8915 21 7 1.6424 -6.0379 -0.3741 22 14 0.8203 -7.3663 1.9150 23 1 -0.5620 -7.1771 2.4237 24 1 0.8759 -8.5892 1.0744 25 1 1.7539 -7.5109 3.0607 26 6 2.0901 -3.5628 -0.7064 27 6 1.7977 -2.1329 -1.2257 28 1 0.7404 -2.0114 -1.4611 29 8 2.6111 -1.8224 -2.3588 30 1 -0.3633 0.0002 -1.0277 31 1 -0.3633 -0.8900 0.5138 32 1 -0.3632 0.8900 0.5139 33 1 1.9324 2.9475 2.0351 34 1 0.4764 3.7878 1.4498 35 1 0.3968 2.0617 1.8758 36 1 2.5220 3.3056 -1.6230 37 1 1.7177 4.5144 -0.5937 38 1 3.1735 3.6739 -0.0080 39 1 1.0279 2.6508 -2.6738 40 1 1.0538 0.9642 -2.1061 41 1 -1.4015 0.8242 -2.3890 42 1 -0.6160 1.2838 -3.9196 43 1 -2.6273 2.6870 -3.4437 44 1 -1.1361 3.6586 -3.4954 45 1 -2.5168 2.6124 -0.9805 46 1 -2.4989 4.3019 -1.5415 47 1 -0.7865 3.9159 0.2179 48 1 -0.0329 4.3521 -1.3345 49 1 2.5126 -2.0623 1.9957 50 1 0.7966 -1.8275 1.5612 51 1 1.6259 -6.9208 -0.7755 52 1 1.4896 -4.2934 -1.2484 53 1 3.1508 -3.7932 -0.8062 54 1 2.3981 -2.3377 -3.1488 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001047379607.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:51:10 Heat of formation + Delta-G solvation = -46.682549 kcal Electronic energy + Delta-G solvation = -33234.921802 eV Core-core repulsion = 29207.653899 eV Total energy + Delta-G solvation = -4027.267904 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 339.231 amu Computer time = 1.22 seconds Orbital eigenvalues (eV) -42.15795 -40.09666 -39.09306 -36.75020 -36.27343 -35.96638 -33.78851 -31.94229 -31.26049 -30.42326 -29.04716 -28.32936 -27.67742 -26.55850 -25.39400 -24.21740 -23.10818 -22.34359 -21.27299 -20.25596 -19.82581 -19.02538 -18.78136 -18.00407 -17.37611 -16.80180 -16.73004 -16.13859 -15.80930 -15.63691 -15.51356 -15.29151 -15.04906 -14.89714 -14.67434 -14.51496 -14.29758 -14.02962 -13.70453 -13.50187 -13.42645 -13.26432 -13.23400 -13.07854 -12.93522 -12.90966 -12.72360 -12.67875 -12.64413 -12.64106 -12.34147 -12.08112 -11.90434 -11.87848 -11.50817 -11.46028 -11.32681 -11.11266 -11.05144 -10.76387 -10.62340 -9.57540 -9.16474 -8.97333 -7.80372 -5.27737 1.48067 1.51517 1.54206 1.57800 1.93968 2.48240 2.75438 3.07846 3.30800 3.39961 3.67611 3.81845 3.87766 3.91986 3.95050 4.05475 4.07605 4.15689 4.18163 4.36251 4.39607 4.44320 4.48748 4.52975 4.58622 4.64511 4.68496 4.72153 4.75349 4.78920 4.82817 4.85246 4.95917 4.99070 5.03756 5.12121 5.12775 5.17133 5.19492 5.31842 5.35140 5.38775 5.41507 5.43933 5.56000 5.61613 5.66313 5.94475 6.12176 6.19519 6.47053 6.81975 7.03923 7.15574 7.68685 8.31966 9.21089 Molecular weight = 339.23amu Principal moments of inertia in cm(-1) A = 0.016575 B = 0.003329 C = 0.003213 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1688.908398 B = 8408.503968 C = 8711.496774 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.081 3.919 2 N -0.584 5.584 3 C 0.521 3.479 4 O -0.591 6.591 5 C 0.100 3.900 6 C -0.136 4.136 7 C -0.159 4.159 8 N -0.513 5.513 9 C 0.047 3.953 10 C -0.112 4.112 11 C -0.117 4.117 12 C -0.111 4.111 13 C 0.044 3.956 14 C 0.145 3.855 15 H 0.075 0.925 16 C 0.133 3.867 17 N -0.617 5.617 18 C -0.244 4.244 19 H 0.085 0.915 20 C -0.061 4.061 21 N -0.949 5.949 22 Si 0.984 3.016 23 H -0.271 1.271 24 H -0.293 1.293 25 H -0.282 1.282 26 C 0.138 3.862 27 C 0.090 3.910 28 H 0.076 0.924 29 O -0.571 6.571 30 H 0.066 0.934 31 H 0.049 0.951 32 H 0.121 0.879 33 H 0.058 0.942 34 H 0.101 0.899 35 H 0.072 0.928 36 H 0.043 0.957 37 H 0.093 0.907 38 H 0.058 0.942 39 H 0.032 0.968 40 H 0.053 0.947 41 H 0.071 0.929 42 H 0.064 0.936 43 H 0.071 0.929 44 H 0.057 0.943 45 H 0.071 0.929 46 H 0.083 0.917 47 H 0.097 0.903 48 H 0.041 0.959 49 H 0.020 0.980 50 H 0.054 0.946 51 H 0.249 0.751 52 H 0.089 0.911 53 H -0.015 1.015 54 H 0.392 0.608 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.499 22.813 -3.503 25.356 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.060 4.060 2 N -0.314 5.314 3 C 0.310 3.690 4 O -0.471 6.471 5 C 0.007 3.993 6 C -0.193 4.193 7 C -0.218 4.218 8 N -0.239 5.239 9 C -0.081 4.081 10 C -0.150 4.150 11 C -0.155 4.155 12 C -0.148 4.148 13 C -0.083 4.083 14 C 0.040 3.960 15 H 0.093 0.907 16 C 0.007 3.993 17 N -0.344 5.344 18 C -0.372 4.372 19 H 0.103 0.897 20 C -0.254 4.254 21 N -0.598 5.598 22 Si 0.812 3.188 23 H -0.197 1.197 24 H -0.219 1.219 25 H -0.208 1.208 26 C 0.012 3.988 27 C 0.029 3.971 28 H 0.094 0.906 29 O -0.377 6.377 30 H 0.085 0.915 31 H 0.067 0.933 32 H 0.138 0.862 33 H 0.077 0.923 34 H 0.119 0.881 35 H 0.091 0.909 36 H 0.062 0.938 37 H 0.112 0.888 38 H 0.077 0.923 39 H 0.050 0.950 40 H 0.071 0.929 41 H 0.089 0.911 42 H 0.083 0.917 43 H 0.090 0.910 44 H 0.076 0.924 45 H 0.090 0.910 46 H 0.101 0.899 47 H 0.115 0.885 48 H 0.059 0.941 49 H 0.038 0.962 50 H 0.072 0.928 51 H 0.059 0.941 52 H 0.107 0.893 53 H 0.003 0.997 54 H 0.241 0.759 Dipole moment (debyes) X Y Z Total from point charges -9.942 22.663 -2.876 24.914 hybrid contribution 0.942 -1.291 -0.512 1.678 sum -9.000 21.371 -3.388 23.435 Atomic orbital electron populations 1.22440 0.76624 1.03580 1.03313 1.47779 1.08548 1.03848 1.71205 1.21118 0.87198 0.86176 0.74524 1.90665 1.16130 1.87849 1.52424 1.21177 0.90009 0.90302 0.97808 1.21919 1.02489 1.03905 0.91009 1.22204 1.00416 0.98638 1.00574 1.62772 1.17487 1.31300 1.12379 1.22193 0.98053 0.99176 0.88687 1.21587 0.94948 0.99031 0.99396 1.21560 0.99937 0.96440 0.97556 1.21570 0.96019 1.02272 0.94974 1.22388 0.94451 0.89128 1.02294 1.21673 0.96755 0.83516 0.94091 0.90664 1.21659 0.98944 0.84426 0.94240 1.44577 1.79472 1.02272 1.08117 1.19441 1.38027 0.85692 0.94046 0.89684 1.25647 1.01937 1.00147 0.97656 1.69979 1.55376 1.21977 1.12430 0.85071 0.78430 0.78060 0.77245 1.19696 1.21882 1.20789 1.22301 0.96518 0.94243 0.85742 1.23344 0.93637 0.94457 0.85658 0.90632 1.86421 1.62299 1.66302 1.22723 0.91528 0.93280 0.86150 0.92265 0.88057 0.90936 0.93784 0.88807 0.92260 0.95022 0.92890 0.91077 0.91728 0.90990 0.92394 0.91001 0.89869 0.88467 0.94098 0.96232 0.92795 0.94085 0.89350 0.99687 0.75888 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 2.09 7.36 127.77 0.94 3.03 16 2 N -0.58 -18.98 2.27 -815.94 -1.85 -20.83 16 3 C 0.52 16.99 5.26 87.66 0.46 17.45 16 4 O -0.59 -24.70 15.46 -3.04 -0.05 -24.75 16 5 C 0.10 2.18 0.29 2.78 0.00 2.18 16 6 C -0.14 -2.31 8.05 71.98 0.58 -1.73 16 7 C -0.16 -3.36 7.32 71.98 0.53 -2.84 16 8 N -0.51 -9.03 1.49 -851.08 -1.27 -10.30 16 9 C 0.05 0.98 3.53 86.32 0.31 1.28 16 10 C -0.11 -1.85 5.88 30.64 0.18 -1.67 16 11 C -0.12 -1.42 6.00 30.68 0.18 -1.24 16 12 C -0.11 -1.12 6.09 30.65 0.19 -0.94 16 13 C 0.04 0.52 4.64 86.33 0.40 0.92 16 14 C 0.14 5.91 3.09 46.18 0.14 6.05 16 15 H 0.08 3.58 6.99 -2.38 -0.02 3.56 16 16 C 0.13 5.86 6.82 86.67 0.59 6.45 16 17 N -0.62 -32.33 3.40 -691.22 -2.35 -34.68 16 18 C -0.24 -13.60 10.28 84.03 0.86 -12.73 16 19 H 0.09 4.51 7.83 -2.91 -0.02 4.49 16 20 C -0.06 -3.42 5.49 84.86 0.47 -2.95 16 21 N -0.95 -55.67 10.09 21.65 0.22 -55.46 16 22 Si 0.98 44.94 29.55 68.60 2.03 46.97 16 23 H -0.27 -11.75 7.11 99.48 0.71 -11.04 16 24 H -0.29 -13.41 7.11 99.48 0.71 -12.71 16 25 H -0.28 -12.62 7.11 99.48 0.71 -11.92 16 26 C 0.14 7.00 5.62 86.86 0.49 7.49 16 27 C 0.09 3.65 3.99 31.99 0.13 3.78 16 28 H 0.08 2.85 7.19 -2.39 -0.02 2.83 16 29 O -0.57 -21.77 13.47 -148.98 -2.01 -23.78 16 30 H 0.07 1.62 4.56 -2.39 -0.01 1.61 16 31 H 0.05 1.39 6.26 -2.39 -0.01 1.37 16 32 H 0.12 2.51 4.43 -2.39 -0.01 2.50 16 33 H 0.06 1.13 8.14 -2.39 -0.02 1.11 16 34 H 0.10 1.08 6.28 -2.39 -0.02 1.07 16 35 H 0.07 1.25 6.83 -2.39 -0.02 1.23 16 36 H 0.04 1.06 6.63 -2.38 -0.02 1.05 16 37 H 0.09 1.38 6.53 -2.39 -0.02 1.36 16 38 H 0.06 1.43 7.87 -2.39 -0.02 1.41 16 39 H 0.03 0.68 6.71 -2.39 -0.02 0.67 16 40 H 0.05 1.48 5.59 -2.39 -0.01 1.47 16 41 H 0.07 1.24 6.73 -2.39 -0.02 1.23 16 42 H 0.06 1.08 8.14 -2.39 -0.02 1.06 16 43 H 0.07 0.77 8.14 -2.39 -0.02 0.75 16 44 H 0.06 0.71 8.14 -2.39 -0.02 0.69 16 45 H 0.07 0.79 8.14 -2.39 -0.02 0.77 16 46 H 0.08 0.60 8.14 -2.39 -0.02 0.58 16 47 H 0.10 0.86 6.01 -2.39 -0.01 0.85 16 48 H 0.04 0.48 6.63 -2.39 -0.02 0.47 16 49 H 0.02 0.90 8.14 -2.39 -0.02 0.88 16 50 H 0.05 2.18 6.12 -2.39 -0.01 2.17 16 51 H 0.25 14.22 8.31 -92.71 -0.77 13.45 16 52 H 0.09 4.89 5.87 -2.39 -0.01 4.87 16 53 H -0.01 -0.85 8.14 -2.39 -0.02 -0.87 16 54 H 0.39 11.45 9.12 -74.06 -0.68 10.78 16 Total: -1.00 -71.97 384.42 1.40 -70.57 By element: Atomic # 1 Polarization: 27.50 SS G_CDS: 0.24 Total: 27.74 kcal Atomic # 6 Polarization: 18.08 SS G_CDS: 6.44 Total: 24.52 kcal Atomic # 7 Polarization: -116.01 SS G_CDS: -5.25 Total: -121.27 kcal Atomic # 8 Polarization: -46.48 SS G_CDS: -2.05 Total: -48.53 kcal Atomic # 14 Polarization: 44.94 SS G_CDS: 2.03 Total: 46.97 kcal Total: -71.97 1.40 -70.57 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001047379607.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.887 kcal (2) G-P(sol) polarization free energy of solvation -71.973 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.086 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.404 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.569 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.683 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.22 seconds