Wall clock time and date at job start Sat Apr 11 2020 05:51:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52996 * 109.46642 * 2 1 4 4 H 1.09002 * 109.91270 * 304.17529 * 3 2 1 5 5 C 1.54003 * 109.91354 * 183.07690 * 3 2 1 6 6 H 1.08990 * 110.30743 * 358.43936 * 5 3 2 7 7 C 1.50699 * 110.30449 * 120.50831 * 5 3 2 8 8 O 1.21285 * 120.00619 * 359.97438 * 7 5 3 9 9 N 1.34778 * 119.99572 * 180.02562 * 7 5 3 10 10 C 1.46502 * 120.00125 * 179.97438 * 9 7 5 11 11 C 1.53001 * 109.47243 * 179.97438 * 10 9 7 12 12 H 1.09003 * 109.40358 * 304.83775 * 11 10 9 13 13 C 1.54294 * 109.40202 * 185.00197 * 11 10 9 14 14 N 1.48184 * 110.69140 * 200.57367 * 13 11 10 15 15 C 1.36946 * 118.51298 * 138.75167 * 14 13 11 16 16 H 1.08004 * 119.99249 * 318.41526 * 15 14 13 17 17 C 1.38805 * 119.99982 * 138.41601 * 15 14 13 18 18 N 1.31624 * 119.99822 * 159.74713 * 17 15 14 19 19 Si 1.86801 * 120.00367 * 339.74727 * 17 15 14 20 20 H 1.48500 * 109.47037 * 95.25357 * 19 17 15 21 21 H 1.48495 * 109.47166 * 215.25418 * 19 17 15 22 22 H 1.48505 * 109.46990 * 335.25069 * 19 17 15 23 23 C 1.44461 * 122.97797 * 318.77077 * 14 13 11 24 24 C 1.54872 * 109.32565 * 88.93418 * 23 14 13 25 25 C 1.47690 * 109.67888 * 290.10663 * 24 23 14 26 26 O 1.40654 * 109.38141 * 64.74640 * 11 10 9 27 27 C 1.54594 * 105.13613 * 239.42347 * 5 3 2 28 28 C 1.54933 * 102.92747 * 338.03967 * 27 5 3 29 29 N 1.47903 * 109.91973 * 65.49225 * 3 2 1 30 30 C 1.46900 * 110.99762 * 265.19490 * 29 3 2 31 31 H 1.09001 * 109.47369 * 53.70656 * 1 2 3 32 32 H 1.09004 * 109.47245 * 173.70423 * 1 2 3 33 33 H 1.08999 * 109.47493 * 293.70276 * 1 2 3 34 34 H 1.08996 * 109.46825 * 240.00142 * 2 1 3 35 35 H 1.08997 * 109.47275 * 119.99863 * 2 1 3 36 36 H 0.97006 * 120.00307 * 359.97438 * 9 7 5 37 37 H 1.09003 * 109.46729 * 59.99601 * 10 9 7 38 38 H 1.09001 * 109.46933 * 299.99811 * 10 9 7 39 39 H 1.09001 * 109.23525 * 80.26104 * 13 11 10 40 40 H 1.09001 * 109.23521 * 320.88579 * 13 11 10 41 41 H 0.97003 * 120.00056 * 179.97438 * 18 17 15 42 42 H 1.08998 * 109.49308 * 328.98056 * 23 14 13 43 43 H 1.09001 * 109.52030 * 208.90592 * 23 14 13 44 44 H 1.08993 * 109.43775 * 170.03926 * 24 23 14 45 45 H 1.09003 * 109.43859 * 50.16625 * 24 23 14 46 46 H 1.08999 * 108.63954 * 181.88789 * 25 24 23 47 47 H 1.09005 * 108.64377 * 299.85853 * 25 24 23 48 48 H 1.08992 * 110.72379 * 96.40719 * 27 5 3 49 49 H 1.09012 * 110.71940 * 219.68296 * 27 5 3 50 50 H 1.08999 * 110.66831 * 278.98385 * 28 27 5 51 51 H 1.09000 * 110.81179 * 155.91711 * 28 27 5 52 52 H 1.08998 * 109.47615 * 65.68582 * 30 29 3 53 53 H 1.08998 * 109.47222 * 185.69146 * 30 29 3 54 54 H 1.09006 * 109.47224 * 305.68863 * 30 29 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.6208 1.9844 -0.8479 5 6 3.5779 1.4552 -0.0777 6 1 3.9645 0.4363 -0.0877 7 6 4.0332 2.1987 -1.3069 8 8 3.2155 2.6800 -2.0624 9 7 5.3493 2.3279 -1.5673 10 6 5.7921 3.0501 -2.7625 11 6 7.3210 3.0512 -2.8207 12 1 7.7184 3.4638 -1.8933 13 6 7.7882 3.9174 -4.0089 14 7 9.1726 3.5642 -4.4020 15 6 9.4748 3.4907 -5.7357 16 1 8.7801 3.0297 -6.4222 17 6 10.6740 4.0087 -6.2051 18 7 11.1556 3.6082 -7.3628 19 14 11.6046 5.2740 -5.1938 20 1 12.6361 4.5902 -4.3731 21 1 12.2606 6.2483 -6.1023 22 1 10.6566 5.9893 -4.3022 23 6 10.2177 3.2933 -3.4422 24 6 10.2085 1.7862 -3.0860 25 6 9.0029 1.4697 -2.2938 26 8 7.7828 1.7325 -2.9829 27 6 4.0405 2.1945 1.1987 28 6 2.7905 3.0207 1.5930 29 7 1.6639 2.1098 1.2653 30 6 0.4090 2.8582 1.1130 31 1 -0.3634 0.6083 -0.8283 32 1 -0.3634 -1.0215 -0.1127 33 1 -0.3634 0.4131 0.9409 34 1 1.8933 -0.5138 -0.8900 35 1 1.8933 -0.5138 0.8900 36 1 6.0034 1.9426 -0.9634 37 1 5.4297 4.0773 -2.7214 38 1 5.3947 2.5599 -3.6513 39 1 7.7534 4.9686 -3.7226 40 1 7.1218 3.7545 -4.8560 41 1 11.9935 3.9704 -7.6910 42 1 10.0449 3.8812 -2.5408 43 1 11.1838 3.5599 -3.8708 44 1 11.0982 1.5455 -2.5043 45 1 10.2049 1.1967 -4.0029 46 1 9.0304 0.4140 -2.0241 47 1 9.0213 2.0627 -1.3793 48 1 4.2968 1.4840 1.9845 49 1 4.8833 2.8505 0.9804 50 1 2.7310 3.9344 1.0016 51 1 2.8000 3.2532 2.6579 52 1 -0.4090 2.1621 0.9276 53 1 0.2082 3.4202 2.0251 54 1 0.4967 3.5477 0.2733 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001073605889.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:51:21 Heat of formation + Delta-G solvation = -74.490759 kcal Electronic energy + Delta-G solvation = -31203.698152 eV Core-core repulsion = 27175.224394 eV Total energy + Delta-G solvation = -4028.473758 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 339.231 amu Computer time = 1.14 seconds Orbital eigenvalues (eV) -41.60365 -40.51990 -39.20382 -37.11294 -36.00618 -34.28282 -33.93407 -33.78809 -33.18548 -30.58156 -29.08008 -27.80712 -27.17960 -26.49593 -24.36760 -23.58321 -22.87962 -22.57041 -21.86704 -21.32586 -20.64358 -18.73125 -18.40603 -17.81216 -17.53372 -17.28866 -16.83086 -16.56270 -16.16303 -16.05888 -15.70271 -15.49259 -15.18663 -15.09431 -14.73195 -14.33917 -14.21882 -14.20191 -14.11380 -13.99047 -13.84866 -13.58628 -13.40745 -13.22827 -13.11184 -12.79819 -12.68154 -12.48718 -12.39015 -12.29469 -12.12779 -11.89794 -11.82683 -11.75585 -11.61502 -11.52322 -11.41791 -11.38933 -10.89400 -10.65000 -10.39059 -10.15995 -9.44877 -8.69227 -8.20945 -5.64599 1.28324 1.39782 1.51295 1.57302 2.06077 2.39812 2.84862 3.03294 3.05857 3.28257 3.46857 3.63629 3.74652 3.97699 4.01910 4.09251 4.13116 4.14438 4.20765 4.31642 4.32850 4.42462 4.43586 4.50233 4.54567 4.56851 4.58871 4.60335 4.69167 4.73998 4.75370 4.77153 4.89998 4.96889 4.98866 4.99432 4.99759 5.09923 5.11843 5.14288 5.15796 5.16166 5.31150 5.37881 5.46473 5.47783 5.88675 5.96007 6.05095 6.16072 6.49717 6.51476 7.03415 7.19754 7.63685 7.98563 8.98879 Molecular weight = 339.23amu Principal moments of inertia in cm(-1) A = 0.024455 B = 0.002283 C = 0.002279 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1144.707303 B =12261.365277 C =12283.850923 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.104 4.104 3 C 0.070 3.930 4 H 0.049 0.951 5 C -0.115 4.115 6 H 0.129 0.871 7 C 0.515 3.485 8 O -0.586 6.586 9 N -0.706 5.706 10 C 0.132 3.868 11 C 0.081 3.919 12 H 0.089 0.911 13 C 0.123 3.877 14 N -0.609 5.609 15 C -0.260 4.260 16 H 0.025 0.975 17 C -0.023 4.023 18 N -0.953 5.953 19 Si 0.955 3.045 20 H -0.269 1.269 21 H -0.310 1.310 22 H -0.256 1.256 23 C 0.134 3.866 24 C -0.172 4.172 25 C 0.072 3.928 26 O -0.377 6.377 27 C -0.105 4.105 28 C 0.028 3.972 29 N -0.511 5.511 30 C 0.009 3.991 31 H 0.039 0.961 32 H 0.061 0.939 33 H 0.066 0.934 34 H 0.059 0.941 35 H 0.081 0.919 36 H 0.415 0.585 37 H 0.083 0.917 38 H 0.051 0.949 39 H 0.044 0.956 40 H 0.043 0.957 41 H 0.263 0.737 42 H 0.066 0.934 43 H 0.032 0.968 44 H 0.092 0.908 45 H 0.035 0.965 46 H 0.097 0.903 47 H 0.074 0.926 48 H 0.110 0.890 49 H 0.085 0.915 50 H 0.028 0.972 51 H 0.102 0.898 52 H 0.081 0.919 53 H 0.080 0.920 54 H 0.012 0.988 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.233 -4.804 26.160 30.651 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.142 4.142 3 C -0.039 4.039 4 H 0.067 0.933 5 C -0.137 4.137 6 H 0.146 0.854 7 C 0.303 3.697 8 O -0.467 6.467 9 N -0.358 5.358 10 C 0.007 3.993 11 C 0.021 3.979 12 H 0.106 0.894 13 C -0.002 4.002 14 N -0.333 5.333 15 C -0.390 4.390 16 H 0.043 0.957 17 C -0.219 4.219 18 N -0.597 5.597 19 Si 0.782 3.218 20 H -0.196 1.196 21 H -0.238 1.238 22 H -0.180 1.180 23 C 0.008 3.992 24 C -0.212 4.212 25 C -0.004 4.004 26 O -0.296 6.296 27 C -0.143 4.143 28 C -0.100 4.100 29 N -0.235 5.235 30 C -0.140 4.140 31 H 0.058 0.942 32 H 0.080 0.920 33 H 0.085 0.915 34 H 0.078 0.922 35 H 0.099 0.901 36 H 0.252 0.748 37 H 0.101 0.899 38 H 0.070 0.930 39 H 0.061 0.939 40 H 0.062 0.938 41 H 0.072 0.928 42 H 0.084 0.916 43 H 0.050 0.950 44 H 0.110 0.890 45 H 0.054 0.946 46 H 0.115 0.885 47 H 0.092 0.908 48 H 0.128 0.872 49 H 0.103 0.897 50 H 0.046 0.954 51 H 0.121 0.879 52 H 0.100 0.900 53 H 0.099 0.901 54 H 0.030 0.970 Dipole moment (debyes) X Y Z Total from point charges -15.901 -4.947 25.839 30.741 hybrid contribution 1.176 1.290 -1.388 2.230 sum -14.725 -3.658 24.451 28.776 Atomic orbital electron populations 1.21832 0.95544 1.01750 1.01595 1.21488 0.96575 0.93947 1.02193 1.22440 0.92578 0.97082 0.91776 0.93318 1.22248 0.96894 1.01823 0.92687 0.85357 1.21037 0.81994 0.79392 0.87297 1.90676 1.53955 1.50702 1.51321 1.45729 1.07171 1.56606 1.26253 1.21293 0.92518 0.97342 0.88124 1.22622 0.92509 0.84348 0.98418 0.89365 1.22022 0.85322 0.96245 0.96634 1.43885 1.06662 1.80845 1.01912 1.18610 1.03883 1.31795 0.84741 0.95716 1.26235 0.99304 0.99558 0.96820 1.70009 1.21271 1.44769 1.23635 0.85684 0.78483 0.79597 0.77998 1.19602 1.23835 1.18018 1.21269 0.91055 0.94694 0.92158 1.22102 0.99893 0.98657 1.00598 1.21554 0.83181 1.02188 0.93455 1.87513 1.39190 1.27877 1.74991 1.22549 0.97340 0.99210 0.95174 1.23345 0.90510 0.94014 1.02093 1.64791 1.02908 1.26738 1.29090 1.22718 0.92960 0.97626 1.00672 0.94202 0.92013 0.91524 0.92210 0.90068 0.74769 0.89901 0.93040 0.93852 0.93816 0.92798 0.91567 0.95005 0.88988 0.94613 0.88546 0.90755 0.87184 0.89683 0.95383 0.87943 0.90048 0.90135 0.96955 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.21 8.71 71.98 0.63 -1.58 16 2 C -0.10 -1.63 5.40 30.59 0.17 -1.46 16 3 C 0.07 1.31 2.23 45.06 0.10 1.41 16 4 H 0.05 1.26 5.93 -2.39 -0.01 1.25 16 5 C -0.11 -1.84 3.02 -10.66 -0.03 -1.88 16 6 H 0.13 1.57 7.68 -2.39 -0.02 1.55 16 7 C 0.52 12.09 7.06 87.66 0.62 12.71 16 8 O -0.59 -19.33 15.24 -3.04 -0.05 -19.37 16 9 N -0.71 -14.59 5.28 -463.04 -2.44 -17.03 16 10 C 0.13 3.48 5.23 86.38 0.45 3.93 16 11 C 0.08 2.27 2.35 31.03 0.07 2.34 16 12 H 0.09 1.94 7.20 -2.39 -0.02 1.92 16 13 C 0.12 4.66 6.12 86.49 0.53 5.19 16 14 N -0.61 -28.04 2.11 -696.44 -1.47 -29.51 16 15 C -0.26 -15.00 9.70 84.03 0.81 -14.19 16 16 H 0.03 1.65 8.06 -2.91 -0.02 1.62 16 17 C -0.02 -1.35 5.26 84.86 0.45 -0.91 16 18 N -0.95 -60.40 13.97 21.65 0.30 -60.10 16 19 Si 0.95 45.72 25.08 68.60 1.72 47.44 16 20 H -0.27 -12.04 6.72 99.48 0.67 -11.37 16 21 H -0.31 -15.15 7.11 99.48 0.71 -14.44 16 22 H -0.26 -11.53 7.11 99.48 0.71 -10.83 16 23 C 0.13 5.25 4.42 87.40 0.39 5.64 16 24 C -0.17 -5.73 6.03 29.57 0.18 -5.55 16 25 C 0.07 1.84 6.04 70.32 0.43 2.27 16 26 O -0.38 -11.80 9.77 -145.72 -1.42 -13.22 16 27 C -0.10 -1.17 6.59 31.80 0.21 -0.96 16 28 C 0.03 0.40 6.56 86.65 0.57 0.97 16 29 N -0.51 -8.30 5.03 -884.05 -4.44 -12.75 16 30 C 0.01 0.14 9.06 127.69 1.16 1.29 16 31 H 0.04 0.66 8.14 -2.39 -0.02 0.64 16 32 H 0.06 0.78 8.14 -2.38 -0.02 0.76 16 33 H 0.07 0.92 6.19 -2.39 -0.01 0.91 16 34 H 0.06 0.98 8.14 -2.39 -0.02 0.96 16 35 H 0.08 1.09 8.14 -2.39 -0.02 1.07 16 36 H 0.42 6.11 8.46 -92.70 -0.78 5.33 16 37 H 0.08 2.14 8.14 -2.39 -0.02 2.12 16 38 H 0.05 1.66 8.14 -2.39 -0.02 1.64 16 39 H 0.04 1.53 8.14 -2.39 -0.02 1.51 16 40 H 0.04 1.83 7.75 -2.39 -0.02 1.81 16 41 H 0.26 15.72 8.31 -92.71 -0.77 14.95 16 42 H 0.07 2.14 8.10 -2.39 -0.02 2.12 16 43 H 0.03 1.41 3.51 -2.39 -0.01 1.40 16 44 H 0.09 2.46 8.14 -2.39 -0.02 2.44 16 45 H 0.03 1.49 8.14 -2.39 -0.02 1.47 16 46 H 0.10 2.04 8.14 -2.39 -0.02 2.02 16 47 H 0.07 1.38 7.27 -2.38 -0.02 1.36 16 48 H 0.11 0.80 8.14 -2.39 -0.02 0.78 16 49 H 0.08 0.84 7.68 -2.38 -0.02 0.82 16 50 H 0.03 0.50 8.02 -2.39 -0.02 0.48 16 51 H 0.10 1.09 8.14 -2.39 -0.02 1.07 16 52 H 0.08 1.17 5.37 -2.39 -0.01 1.15 16 53 H 0.08 1.01 8.14 -2.39 -0.02 0.99 16 54 H 0.01 0.23 7.94 -2.38 -0.02 0.21 16 Total: -1.00 -76.56 404.51 -1.03 -77.59 By element: Atomic # 1 Polarization: 17.67 SS G_CDS: 0.05 Total: 17.72 kcal Atomic # 6 Polarization: 2.50 SS G_CDS: 6.72 Total: 9.22 kcal Atomic # 7 Polarization: -111.33 SS G_CDS: -8.05 Total: -119.38 kcal Atomic # 8 Polarization: -31.13 SS G_CDS: -1.47 Total: -32.60 kcal Atomic # 14 Polarization: 45.72 SS G_CDS: 1.72 Total: 47.44 kcal Total: -76.56 -1.03 -77.59 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001073605889.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.101 kcal (2) G-P(sol) polarization free energy of solvation -76.564 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -73.464 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.027 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.591 kcal (6) G-S(sol) free energy of system = (1) + (5) -74.491 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.14 seconds