Wall clock time and date at job start Sat Apr 11 2020 05:51:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.52998 * 109.47272 * 2 1 4 4 H 1.09004 * 110.46471 * 56.32977 * 3 2 1 5 5 C 1.54380 * 110.41210 * 293.91500 * 3 2 1 6 6 H 1.08993 * 110.41224 * 336.31271 * 5 3 2 7 7 C 1.50702 * 110.32243 * 98.47139 * 5 3 2 8 8 O 1.21283 * 120.00107 * 357.09178 * 7 5 3 9 9 N 1.34779 * 120.00321 * 177.09272 * 7 5 3 10 10 C 1.46494 * 120.00454 * 179.97438 * 9 7 5 11 11 C 1.52999 * 109.47447 * 179.97438 * 10 9 7 12 12 H 1.09000 * 108.56927 * 62.05125 * 11 10 9 13 13 C 1.46912 * 108.62001 * 180.02562 * 11 10 9 14 14 N 1.50124 * 106.77541 * 177.77773 * 13 11 10 15 15 C 1.36938 * 120.63237 * 111.34597 * 14 13 11 16 16 H 1.08004 * 119.99627 * 219.13498 * 15 14 13 17 17 C 1.38812 * 120.00392 * 39.13361 * 15 14 13 18 18 N 1.31617 * 119.99774 * 23.40820 * 17 15 14 19 19 Si 1.86793 * 120.00233 * 203.40444 * 17 15 14 20 20 H 1.48500 * 109.47107 * 60.00043 * 19 17 15 21 21 H 1.48497 * 109.47281 * 180.02562 * 19 17 15 22 22 H 1.48501 * 109.47538 * 300.00151 * 19 17 15 23 23 C 1.43424 * 118.72863 * 291.61078 * 14 13 11 24 24 C 1.54789 * 116.57264 * 89.22491 * 23 14 13 25 25 C 1.55194 * 108.80014 * 319.49189 * 24 23 14 26 26 O 1.39645 * 110.56673 * 322.07226 * 25 24 23 27 27 C 1.54256 * 105.06333 * 217.36681 * 5 3 2 28 28 C 1.54382 * 105.05991 * 359.97438 * 27 5 3 29 29 N 1.48558 * 104.59228 * 23.85397 * 28 27 5 30 30 C 1.46908 * 111.00061 * 200.95805 * 29 28 27 31 31 H 1.09002 * 109.46980 * 65.70331 * 1 2 3 32 32 H 1.08997 * 109.47441 * 185.70514 * 1 2 3 33 33 H 1.09000 * 109.47414 * 305.70759 * 1 2 3 34 34 H 1.09001 * 109.47062 * 240.00038 * 2 1 3 35 35 H 1.08998 * 109.47169 * 119.99631 * 2 1 3 36 36 H 0.97004 * 119.99677 * 359.97438 * 9 7 5 37 37 H 1.09007 * 109.47253 * 59.99827 * 10 9 7 38 38 H 1.09000 * 109.47453 * 300.00095 * 10 9 7 39 39 H 1.09003 * 109.99737 * 58.46492 * 13 11 10 40 40 H 1.08995 * 110.06907 * 297.13393 * 13 11 10 41 41 H 0.97003 * 120.00223 * 6.81617 * 18 17 15 42 42 H 1.09004 * 108.12418 * 210.83790 * 23 14 13 43 43 H 1.08993 * 108.12884 * 327.32933 * 23 14 13 44 44 H 1.09001 * 109.66386 * 199.66361 * 24 23 14 45 45 H 1.09002 * 109.65452 * 79.30661 * 24 23 14 46 46 H 1.09001 * 109.25493 * 201.79954 * 25 24 23 47 47 H 1.08996 * 109.22906 * 82.33651 * 25 24 23 48 48 H 1.09000 * 110.32272 * 118.89763 * 27 5 3 49 49 H 1.09008 * 110.32783 * 241.10854 * 27 5 3 50 50 H 1.09001 * 110.41184 * 142.62824 * 28 27 5 51 51 H 1.08994 * 110.41682 * 265.07392 * 28 27 5 52 52 H 1.08994 * 109.46633 * 55.50057 * 30 29 28 53 53 H 1.08992 * 109.46877 * 175.49986 * 30 29 28 54 54 H 1.09002 * 109.46607 * 295.50053 * 30 29 28 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6332 1.9905 0.8499 5 6 1.6665 2.1456 -1.3226 6 1 1.5113 1.4112 -2.1129 7 6 0.4280 2.9841 -1.1380 8 8 -0.1493 2.9865 -0.0714 9 7 -0.0382 3.7314 -2.1582 10 6 -1.2425 4.5461 -1.9790 11 6 -1.5529 5.2905 -3.2791 12 1 -1.7509 4.5568 -4.0605 13 6 -2.7617 6.1009 -3.0785 14 7 -2.9961 6.8532 -4.3563 15 6 -4.0700 6.5579 -5.1530 16 1 -3.9622 6.5609 -6.2276 17 6 -5.2972 6.2546 -4.5794 18 7 -5.5786 6.6778 -3.3653 19 14 -6.5491 5.2461 -5.5306 20 1 -5.9690 3.9192 -5.8593 21 1 -7.7685 5.0626 -4.7033 22 1 -6.9052 5.9552 -6.7859 23 6 -2.0704 7.8832 -4.7296 24 6 -0.8545 7.4458 -5.5818 25 6 -0.3285 6.0886 -5.0432 26 8 -0.4070 6.0503 -3.6495 27 6 2.8763 3.0430 -1.6551 28 6 3.8788 2.8070 -0.5051 29 7 3.5248 1.4676 0.0312 30 6 4.0257 1.3002 1.4021 31 1 -0.3633 0.4229 -0.9367 32 1 -0.3634 -1.0225 0.1022 33 1 -0.3634 0.5998 0.8345 34 1 1.8933 -0.5138 -0.8900 35 1 1.8933 -0.5138 0.8900 36 1 0.4237 3.7298 -3.0112 37 1 -1.0776 5.2671 -1.1783 38 1 -2.0822 3.9012 -1.7198 39 1 -2.6093 6.8007 -2.2568 40 1 -3.6135 5.4554 -2.8646 41 1 -4.9724 7.2826 -2.9097 42 1 -2.6157 8.6422 -5.2906 43 1 -1.6944 8.3479 -3.8182 44 1 -0.0675 8.1966 -5.5105 45 1 -1.1580 7.3325 -6.6225 46 1 0.7098 5.9589 -5.3483 47 1 -0.9293 5.2801 -5.4595 48 1 3.3161 2.7478 -2.6078 49 1 2.5744 4.0900 -1.6848 50 1 4.9004 2.8064 -0.8853 51 1 3.7597 3.5687 0.2655 52 1 3.6484 2.1088 2.0280 53 1 3.6848 0.3441 1.7991 54 1 5.1154 1.3234 1.3960 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001073605890.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:51:25 Heat of formation + Delta-G solvation = -79.604927 kcal Electronic energy + Delta-G solvation = -31649.205453 eV Core-core repulsion = 27620.509927 eV Total energy + Delta-G solvation = -4028.695525 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 339.231 amu Computer time = 1.17 seconds Orbital eigenvalues (eV) -41.64750 -40.83026 -39.17968 -37.08998 -36.11480 -34.38864 -34.07658 -33.59235 -32.85393 -30.26005 -29.00149 -27.63521 -27.04779 -26.42989 -24.61328 -24.01719 -22.62039 -22.53177 -21.61681 -21.45402 -20.60632 -19.33546 -18.49786 -17.83199 -17.32020 -16.94478 -16.77824 -16.48142 -15.99994 -15.85305 -15.61796 -15.50550 -15.39759 -15.15112 -14.91427 -14.67304 -14.35905 -14.21166 -14.14689 -13.88383 -13.74729 -13.60800 -13.37161 -12.91744 -12.81789 -12.63009 -12.56377 -12.46750 -12.42393 -12.16147 -12.07415 -12.03899 -11.93827 -11.78173 -11.66335 -11.63777 -11.47494 -11.23182 -10.83291 -10.52684 -10.45994 -10.14955 -9.54762 -8.93021 -8.23691 -5.59292 1.58040 1.59534 1.63545 1.83231 2.06466 2.62060 2.86834 2.97804 3.12522 3.39760 3.42180 3.61973 3.78258 3.91994 3.94326 4.11818 4.14990 4.17038 4.25351 4.28582 4.33187 4.37935 4.40352 4.47264 4.51275 4.52751 4.57556 4.62880 4.62981 4.70739 4.72290 4.76035 4.89076 4.91389 4.95724 4.98294 5.03731 5.07392 5.10287 5.11725 5.12716 5.15009 5.24705 5.26157 5.33617 5.43285 5.80972 5.92397 5.99680 6.23756 6.34788 6.51760 7.05088 7.20658 7.67615 8.22393 8.93480 Molecular weight = 339.23amu Principal moments of inertia in cm(-1) A = 0.015761 B = 0.002814 C = 0.002525 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1776.154497 B = 9948.924585 C =11087.971092 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.098 4.098 3 C 0.076 3.924 4 H 0.044 0.956 5 C -0.104 4.104 6 H 0.125 0.875 7 C 0.516 3.484 8 O -0.577 6.577 9 N -0.707 5.707 10 C 0.130 3.870 11 C 0.083 3.917 12 H 0.067 0.933 13 C 0.127 3.873 14 N -0.605 5.605 15 C -0.359 4.359 16 H 0.044 0.956 17 C -0.063 4.063 18 N -0.930 5.930 19 Si 1.110 2.890 20 H -0.275 1.275 21 H -0.294 1.294 22 H -0.276 1.276 23 C 0.155 3.845 24 C -0.161 4.161 25 C 0.063 3.937 26 O -0.356 6.356 27 C -0.113 4.113 28 C 0.030 3.970 29 N -0.513 5.513 30 C 0.012 3.988 31 H 0.039 0.961 32 H 0.066 0.934 33 H 0.038 0.962 34 H 0.080 0.920 35 H 0.068 0.932 36 H 0.413 0.587 37 H 0.057 0.943 38 H 0.068 0.932 39 H 0.025 0.975 40 H 0.062 0.938 41 H 0.254 0.746 42 H 0.019 0.981 43 H 0.020 0.980 44 H 0.080 0.920 45 H 0.060 0.940 46 H 0.102 0.898 47 H 0.047 0.953 48 H 0.107 0.893 49 H 0.069 0.931 50 H 0.104 0.896 51 H 0.034 0.966 52 H 0.019 0.981 53 H 0.074 0.926 54 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 21.196 -11.713 1.919 24.293 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.136 4.136 3 C -0.033 4.033 4 H 0.062 0.938 5 C -0.126 4.126 6 H 0.143 0.857 7 C 0.303 3.697 8 O -0.456 6.456 9 N -0.359 5.359 10 C 0.004 3.996 11 C 0.023 3.977 12 H 0.085 0.915 13 C 0.002 3.998 14 N -0.328 5.328 15 C -0.489 4.489 16 H 0.062 0.938 17 C -0.261 4.261 18 N -0.570 5.570 19 Si 0.934 3.066 20 H -0.200 1.200 21 H -0.220 1.220 22 H -0.202 1.202 23 C 0.027 3.973 24 C -0.202 4.202 25 C -0.014 4.014 26 O -0.274 6.274 27 C -0.151 4.151 28 C -0.097 4.097 29 N -0.236 5.236 30 C -0.136 4.136 31 H 0.059 0.941 32 H 0.085 0.915 33 H 0.058 0.942 34 H 0.099 0.901 35 H 0.087 0.913 36 H 0.250 0.750 37 H 0.075 0.925 38 H 0.086 0.914 39 H 0.043 0.957 40 H 0.081 0.919 41 H 0.063 0.937 42 H 0.037 0.963 43 H 0.039 0.961 44 H 0.099 0.901 45 H 0.079 0.921 46 H 0.120 0.880 47 H 0.066 0.934 48 H 0.126 0.874 49 H 0.088 0.912 50 H 0.122 0.878 51 H 0.053 0.947 52 H 0.038 0.962 53 H 0.093 0.907 54 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges 19.661 -12.745 2.597 23.574 hybrid contribution 0.512 2.056 0.177 2.126 sum 20.174 -10.689 2.773 22.998 Atomic orbital electron populations 1.21694 0.96013 1.01415 1.01037 1.21364 0.94761 0.94257 1.03194 1.22560 0.88279 0.96949 0.95497 0.93842 1.22110 0.92072 0.97888 1.00522 0.85718 1.21000 0.86055 0.79475 0.83174 1.90682 1.60751 1.66421 1.27779 1.45749 1.28546 1.45618 1.15956 1.21353 0.87945 0.93354 0.96925 1.21631 0.87322 0.92548 0.96204 0.91501 1.20804 0.95790 0.94731 0.88444 1.44010 1.26397 1.39354 1.23042 1.19975 0.89483 1.49221 0.90200 0.93806 1.27308 0.98665 1.01263 0.98870 1.70903 1.37952 1.32034 1.16092 0.82939 0.73783 0.75707 0.74158 1.20039 1.21965 1.20171 1.20336 0.90736 0.89896 0.96294 1.23361 0.98195 0.99002 0.99629 1.22553 1.01216 0.96709 0.80950 1.87605 1.43173 1.74251 1.22325 1.22369 0.93213 0.98937 1.00602 1.23192 1.00808 0.89375 0.96366 1.65373 1.08073 1.28945 1.21256 1.22571 1.01685 1.01230 0.88162 0.94134 0.91539 0.94248 0.90146 0.91310 0.75035 0.92451 0.91381 0.95714 0.91927 0.93689 0.96297 0.96126 0.90111 0.92113 0.88041 0.93420 0.87437 0.91190 0.87798 0.94725 0.96197 0.90683 0.89635 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.09 8.71 71.98 0.63 -2.46 16 2 C -0.10 -1.80 5.56 30.59 0.17 -1.63 16 3 C 0.08 1.57 1.72 45.07 0.08 1.65 16 4 H 0.04 1.18 6.76 -2.39 -0.02 1.17 16 5 C -0.10 -2.01 2.44 -10.65 -0.03 -2.04 16 6 H 0.12 1.98 7.81 -2.39 -0.02 1.96 16 7 C 0.52 13.80 6.08 87.66 0.53 14.34 16 8 O -0.58 -20.12 14.20 -3.04 -0.04 -20.17 16 9 N -0.71 -18.19 5.27 -463.06 -2.44 -20.63 16 10 C 0.13 4.20 5.26 86.38 0.45 4.66 16 11 C 0.08 2.91 2.16 28.71 0.06 2.97 16 12 H 0.07 2.39 6.77 -2.39 -0.02 2.37 16 13 C 0.13 5.73 4.21 83.78 0.35 6.09 16 14 N -0.61 -29.41 2.27 -707.11 -1.61 -31.01 16 15 C -0.36 -19.38 9.39 84.03 0.79 -18.59 16 16 H 0.04 2.39 7.93 -2.91 -0.02 2.37 16 17 C -0.06 -3.46 4.73 84.86 0.40 -3.06 16 18 N -0.93 -55.60 12.55 21.65 0.27 -55.33 16 19 Si 1.11 49.27 29.98 68.60 2.06 51.33 16 20 H -0.27 -11.32 7.11 99.48 0.71 -10.62 16 21 H -0.29 -13.41 7.11 99.48 0.71 -12.70 16 22 H -0.28 -11.48 7.11 99.48 0.71 -10.77 16 23 C 0.15 6.58 5.28 87.56 0.46 7.04 16 24 C -0.16 -5.20 6.74 31.96 0.22 -4.98 16 25 C 0.06 1.82 6.38 72.73 0.46 2.28 16 26 O -0.36 -11.48 9.33 -137.24 -1.28 -12.76 16 27 C -0.11 -1.74 6.57 31.49 0.21 -1.53 16 28 C 0.03 0.48 6.49 86.45 0.56 1.04 16 29 N -0.51 -8.93 5.34 -882.75 -4.71 -13.65 16 30 C 0.01 0.18 9.45 127.69 1.21 1.39 16 31 H 0.04 0.94 7.08 -2.39 -0.02 0.92 16 32 H 0.07 1.20 8.14 -2.39 -0.02 1.18 16 33 H 0.04 1.03 7.69 -2.39 -0.02 1.01 16 34 H 0.08 1.29 8.06 -2.39 -0.02 1.27 16 35 H 0.07 1.16 7.37 -2.39 -0.02 1.15 16 36 H 0.41 8.57 8.17 -92.71 -0.76 7.81 16 37 H 0.06 2.03 8.14 -2.38 -0.02 2.01 16 38 H 0.07 2.36 8.14 -2.39 -0.02 2.34 16 39 H 0.02 1.15 8.14 -2.39 -0.02 1.13 16 40 H 0.06 3.17 6.55 -2.39 -0.02 3.16 16 41 H 0.25 15.61 7.35 -92.71 -0.68 14.93 16 42 H 0.02 0.85 7.98 -2.38 -0.02 0.83 16 43 H 0.02 0.88 7.99 -2.39 -0.02 0.86 16 44 H 0.08 2.22 8.14 -2.39 -0.02 2.20 16 45 H 0.06 1.94 8.14 -2.39 -0.02 1.92 16 46 H 0.10 2.16 8.14 -2.39 -0.02 2.14 16 47 H 0.05 1.47 6.66 -2.39 -0.02 1.46 16 48 H 0.11 1.15 8.14 -2.39 -0.02 1.13 16 49 H 0.07 1.20 7.65 -2.38 -0.02 1.19 16 50 H 0.10 1.25 8.14 -2.39 -0.02 1.23 16 51 H 0.03 0.62 7.90 -2.39 -0.02 0.60 16 52 H 0.02 0.33 7.97 -2.39 -0.02 0.32 16 53 H 0.07 1.05 7.35 -2.39 -0.02 1.03 16 54 H 0.08 1.01 8.14 -2.39 -0.02 0.99 16 Total: -1.00 -67.48 407.89 -1.00 -68.48 By element: Atomic # 1 Polarization: 26.38 SS G_CDS: 0.20 Total: 26.58 kcal Atomic # 6 Polarization: 0.61 SS G_CDS: 6.56 Total: 7.17 kcal Atomic # 7 Polarization: -112.13 SS G_CDS: -8.49 Total: -120.62 kcal Atomic # 8 Polarization: -31.61 SS G_CDS: -1.32 Total: -32.93 kcal Atomic # 14 Polarization: 49.27 SS G_CDS: 2.06 Total: 51.33 kcal Total: -67.48 -1.00 -68.48 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001073605890.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.126 kcal (2) G-P(sol) polarization free energy of solvation -67.481 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -78.607 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.998 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.479 kcal (6) G-S(sol) free energy of system = (1) + (5) -79.605 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.17 seconds