Wall clock time and date at job start Sat Apr 11 2020 05:49:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52999 * 109.46984 * 2 1 4 4 C 1.50696 * 109.47148 * 180.02562 * 3 2 1 5 5 O 1.21276 * 120.00190 * 359.97438 * 4 3 2 6 6 N 1.34784 * 120.00103 * 180.02562 * 4 3 2 7 7 C 1.46499 * 120.00076 * 180.02562 * 6 4 3 8 8 C 1.53001 * 109.46859 * 184.78413 * 7 6 4 9 9 H 1.09000 * 109.45200 * 173.79403 * 8 7 6 10 10 C 1.53029 * 109.46522 * 293.77202 * 8 7 6 11 11 C 1.53123 * 109.27870 * 179.19977 * 10 8 7 12 12 C 1.53119 * 109.15646 * 302.34351 * 11 10 8 13 13 C 1.53002 * 109.50210 * 297.71045 * 12 11 10 14 14 C 1.52997 * 109.53341 * 177.61789 * 12 11 10 15 15 C 1.53034 * 109.28163 * 57.65475 * 12 11 10 16 16 N 1.46832 * 109.46621 * 53.82100 * 8 7 6 17 17 C 1.46900 * 110.98668 * 54.13650 * 16 8 7 18 18 C 1.50694 * 109.47398 * 199.71795 * 17 16 8 19 19 O 1.21295 * 119.99848 * 359.97438 * 18 17 16 20 20 N 1.34773 * 120.00112 * 180.02562 * 18 17 16 21 21 C 1.37103 * 119.99882 * 179.97438 * 20 18 17 22 22 H 1.08000 * 120.00085 * 359.97438 * 21 20 18 23 23 C 1.38957 * 119.99976 * 179.97438 * 21 20 18 24 24 N 1.31410 * 120.00020 * 0.02562 * 23 21 20 25 25 Si 1.86794 * 119.99969 * 180.02562 * 23 21 20 26 26 H 1.48505 * 109.47290 * 60.00172 * 25 23 21 27 27 H 1.48503 * 109.47216 * 180.02562 * 25 23 21 28 28 H 1.48496 * 109.47227 * 300.00086 * 25 23 21 29 29 H 1.09002 * 109.46699 * 299.99389 * 1 2 3 30 30 H 1.09002 * 109.47477 * 59.99742 * 1 2 3 31 31 H 1.09002 * 109.46644 * 180.02562 * 1 2 3 32 32 H 1.09002 * 109.46699 * 240.00611 * 2 1 3 33 33 H 1.08994 * 109.47646 * 119.99921 * 2 1 3 34 34 H 1.09005 * 109.47159 * 60.00008 * 3 2 1 35 35 H 1.09002 * 109.47224 * 300.00413 * 3 2 1 36 36 H 0.97000 * 119.99717 * 359.97438 * 6 4 3 37 37 H 1.08998 * 109.47035 * 64.78713 * 7 6 4 38 38 H 1.08999 * 109.46556 * 304.78371 * 7 6 4 39 39 H 1.08994 * 109.50509 * 59.25406 * 10 8 7 40 40 H 1.09002 * 109.53496 * 299.15368 * 10 8 7 41 41 H 1.08999 * 109.52086 * 182.43814 * 11 10 8 42 42 H 1.09001 * 109.57740 * 62.27834 * 11 10 8 43 43 H 1.09002 * 109.47348 * 179.80186 * 13 12 11 44 44 H 1.08998 * 109.47554 * 299.80400 * 13 12 11 45 45 H 1.09000 * 109.46975 * 59.80972 * 13 12 11 46 46 H 1.08997 * 109.47278 * 300.17561 * 14 12 11 47 47 H 1.09003 * 109.47460 * 60.17720 * 14 12 11 48 48 H 1.09002 * 109.47124 * 180.17247 * 14 12 11 49 49 H 1.08996 * 109.46303 * 60.83589 * 15 12 11 50 50 H 1.09003 * 109.46398 * 180.81249 * 15 12 11 51 51 H 1.09004 * 109.46987 * 319.71802 * 17 16 8 52 52 H 1.08999 * 109.47227 * 79.71179 * 17 16 8 53 53 H 0.96995 * 120.00441 * 359.97438 * 20 18 17 54 54 H 0.96991 * 120.00177 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5469 1.4425 -0.0006 5 8 4.1534 0.3923 -0.0006 6 7 4.2208 2.6098 -0.0002 7 6 5.6858 2.6098 -0.0014 8 6 6.1958 4.0473 0.1197 9 1 7.2802 4.0396 0.2296 10 6 5.8164 4.8307 -1.1389 11 6 6.3112 6.2735 -1.0047 12 6 5.7029 6.8983 0.2540 13 6 4.1794 6.9389 0.1189 14 6 6.2383 8.3208 0.4289 15 6 6.0856 6.0549 1.4723 16 7 5.5894 4.6842 1.2954 17 6 5.8171 3.8818 2.5046 18 6 4.8159 4.2708 3.5616 19 8 3.9937 5.1321 3.3305 20 7 4.8346 3.6623 4.7640 21 6 3.9240 4.0166 5.7258 22 1 3.1920 4.7835 5.5200 23 6 3.9429 3.3889 6.9654 24 7 4.8339 2.4561 7.2159 25 14 2.7018 3.8711 8.2755 26 1 1.3274 3.6251 7.7698 27 1 2.9324 3.0603 9.4981 28 1 2.8594 5.3115 8.6003 29 1 -0.3633 0.5138 0.8901 30 1 -0.3634 0.5139 -0.8900 31 1 -0.3633 -1.0277 0.0005 32 1 1.8933 -0.5138 -0.8901 33 1 1.8934 -0.5138 0.8899 34 1 1.6766 1.9563 0.8900 35 1 1.6766 1.9564 -0.8900 36 1 3.7358 3.4498 0.0001 37 1 6.0484 2.1729 -0.9318 38 1 6.0498 2.0229 0.8419 39 1 4.7329 4.8270 -1.2570 40 1 6.2790 4.3670 -2.0102 41 1 6.0054 6.8464 -1.8801 42 1 7.3984 6.2810 -0.9261 43 1 3.7467 7.3805 1.0166 44 1 3.9074 7.5397 -0.7489 45 1 3.7987 5.9253 -0.0071 46 1 7.3237 8.2915 0.5236 47 1 5.9654 8.9211 -0.4391 48 1 5.8070 8.7635 1.3268 49 1 7.1705 6.0378 1.5759 50 1 5.6420 6.4890 2.3683 51 1 5.7014 2.8245 2.2662 52 1 6.8259 4.0622 2.8758 53 1 5.4922 2.9738 4.9490 54 1 4.8474 2.0182 8.0813 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001098861912.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:49:08 Heat of formation + Delta-G solvation = -112.631435 kcal Electronic energy + Delta-G solvation = -31952.737346 eV Core-core repulsion = 27922.609684 eV Total energy + Delta-G solvation = -4030.127662 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 339.231 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -41.46758 -40.38739 -39.57015 -36.82195 -35.95292 -35.24248 -34.86657 -33.22312 -32.97964 -29.89614 -29.07664 -28.16005 -28.00212 -26.58229 -25.26017 -24.06239 -22.90785 -21.54093 -21.23778 -20.79489 -19.82115 -19.29891 -18.09944 -17.78750 -17.05742 -16.96954 -16.58330 -16.41897 -16.26671 -15.68066 -15.49852 -15.38372 -15.14170 -15.03433 -14.81463 -14.72323 -14.07736 -13.97233 -13.86834 -13.67059 -13.51693 -13.38228 -13.09857 -12.90605 -12.77497 -12.74573 -12.71518 -12.61736 -12.41602 -12.30356 -12.25380 -12.13659 -12.03054 -11.76002 -11.63816 -11.45050 -11.35087 -11.09311 -11.02559 -10.82377 -10.22801 -9.97011 -9.94436 -9.15852 -8.43898 -5.92179 1.39289 1.40256 1.51206 1.71520 2.10821 2.26305 2.34540 2.74177 3.22763 3.40041 3.67169 3.77427 3.88838 3.92145 4.03517 4.04481 4.11801 4.18710 4.27543 4.35246 4.37820 4.48040 4.53836 4.57344 4.63067 4.68840 4.70989 4.76937 4.80032 4.83349 4.90019 4.92731 4.94484 4.99703 5.04441 5.14491 5.17121 5.20560 5.24360 5.27910 5.37874 5.40780 5.42364 5.43850 5.55060 5.55356 5.74909 5.92786 6.11495 6.25010 6.63342 6.65138 7.16139 7.33203 7.60753 8.16409 8.73659 Molecular weight = 339.23amu Principal moments of inertia in cm(-1) A = 0.006678 B = 0.004681 C = 0.003147 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 4191.847368 B = 5979.567400 C = 8896.122607 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.106 4.106 3 C -0.138 4.138 4 C 0.505 3.495 5 O -0.591 6.591 6 N -0.706 5.706 7 C 0.123 3.877 8 C 0.075 3.925 9 H 0.065 0.935 10 C -0.106 4.106 11 C -0.102 4.102 12 C -0.056 4.056 13 C -0.120 4.120 14 C -0.138 4.138 15 C 0.075 3.925 16 N -0.509 5.509 17 C 0.051 3.949 18 C 0.449 3.551 19 O -0.601 6.601 20 N -0.582 5.582 21 C -0.326 4.326 22 H 0.081 0.919 23 C -0.016 4.016 24 N -0.925 5.925 25 Si 0.991 3.009 26 H -0.271 1.271 27 H -0.273 1.273 28 H -0.271 1.271 29 H 0.052 0.948 30 H 0.071 0.929 31 H 0.061 0.939 32 H 0.064 0.936 33 H 0.042 0.958 34 H 0.091 0.909 35 H 0.120 0.880 36 H 0.413 0.587 37 H 0.083 0.917 38 H 0.050 0.950 39 H 0.072 0.928 40 H 0.089 0.911 41 H 0.082 0.918 42 H 0.067 0.933 43 H 0.024 0.976 44 H 0.061 0.939 45 H 0.058 0.942 46 H 0.059 0.941 47 H 0.072 0.928 48 H 0.039 0.961 49 H 0.031 0.969 50 H 0.047 0.953 51 H 0.096 0.904 52 H 0.059 0.941 53 H 0.391 0.609 54 H 0.275 0.725 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.324 4.156 -19.783 20.258 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.144 4.144 3 C -0.177 4.177 4 C 0.293 3.707 5 O -0.473 6.473 6 N -0.358 5.358 7 C -0.001 4.001 8 C -0.033 4.033 9 H 0.083 0.917 10 C -0.143 4.143 11 C -0.140 4.140 12 C -0.057 4.057 13 C -0.177 4.177 14 C -0.195 4.195 15 C -0.053 4.053 16 N -0.233 5.233 17 C -0.080 4.080 18 C 0.236 3.764 19 O -0.485 6.485 20 N -0.219 5.219 21 C -0.455 4.455 22 H 0.099 0.901 23 C -0.215 4.215 24 N -0.567 5.567 25 Si 0.815 3.185 26 H -0.197 1.197 27 H -0.198 1.198 28 H -0.196 1.196 29 H 0.071 0.929 30 H 0.090 0.910 31 H 0.081 0.919 32 H 0.082 0.918 33 H 0.061 0.939 34 H 0.109 0.891 35 H 0.139 0.861 36 H 0.250 0.750 37 H 0.102 0.898 38 H 0.068 0.932 39 H 0.090 0.910 40 H 0.108 0.892 41 H 0.100 0.900 42 H 0.085 0.915 43 H 0.043 0.957 44 H 0.080 0.920 45 H 0.077 0.923 46 H 0.078 0.922 47 H 0.091 0.909 48 H 0.058 0.942 49 H 0.049 0.951 50 H 0.066 0.934 51 H 0.114 0.886 52 H 0.077 0.923 53 H 0.223 0.777 54 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges 0.751 3.931 -19.853 20.253 hybrid contribution 0.601 -0.060 1.782 1.882 sum 1.352 3.872 -18.071 18.530 Atomic orbital electron populations 1.21762 0.93796 1.02441 1.02504 1.21225 0.96694 0.94598 1.01918 1.21739 0.90075 1.00264 1.05647 1.21231 0.91503 0.83226 0.74765 1.90650 1.71578 1.32828 1.52215 1.45886 1.07233 1.08860 1.73818 1.21480 0.80670 0.96130 1.01808 1.22033 0.97406 0.92355 0.91548 0.91672 1.21657 1.02384 0.95072 0.95229 1.21619 1.00146 0.95362 0.96835 1.20545 0.96339 0.94632 0.94172 1.21639 0.94337 1.01790 0.99953 1.21806 1.00826 0.95118 1.01778 1.22099 0.96142 0.88210 0.98844 1.61365 1.59155 1.01664 1.01156 1.21777 0.96288 0.99297 0.90617 1.20636 0.87874 0.84480 0.83416 1.90477 1.42175 1.35204 1.80666 1.41969 1.31599 1.36446 1.11920 1.19592 1.12073 1.20585 0.93266 0.90118 1.26019 0.99642 0.95895 0.99964 1.69681 1.36205 1.25826 1.24965 0.85021 0.78130 0.78294 0.77098 1.19666 1.19814 1.19636 0.92872 0.91045 0.91947 0.91768 0.93871 0.89093 0.86144 0.74974 0.89845 0.93169 0.90970 0.89223 0.89973 0.91458 0.95684 0.92041 0.92315 0.92221 0.90889 0.94161 0.95082 0.93415 0.88566 0.92314 0.77650 0.91546 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.73 9.91 71.98 0.71 -2.01 16 2 C -0.11 -2.52 5.22 30.59 0.16 -2.36 16 3 C -0.14 -3.20 5.70 29.85 0.17 -3.03 16 4 C 0.50 14.72 7.83 87.65 0.69 15.41 16 5 O -0.59 -21.65 15.98 -3.02 -0.05 -21.70 16 6 N -0.71 -17.94 5.13 -463.06 -2.38 -20.32 16 7 C 0.12 2.92 4.60 86.38 0.40 3.32 16 8 C 0.07 1.57 2.10 44.94 0.09 1.67 16 9 H 0.07 1.27 8.14 -2.39 -0.02 1.25 16 10 C -0.11 -1.70 4.91 30.65 0.15 -1.55 16 11 C -0.10 -1.61 4.79 30.67 0.15 -1.46 16 12 C -0.06 -1.22 0.77 -52.13 -0.04 -1.26 16 13 C -0.12 -2.91 8.04 71.98 0.58 -2.33 16 14 C -0.14 -2.67 8.48 71.98 0.61 -2.06 16 15 C 0.07 2.12 3.83 86.33 0.33 2.45 16 16 N -0.51 -14.45 2.79 -875.73 -2.45 -16.90 16 17 C 0.05 1.79 5.31 85.56 0.45 2.24 16 18 C 0.45 21.05 7.49 87.66 0.66 21.70 16 19 O -0.60 -31.46 14.73 -3.08 -0.05 -31.51 16 20 N -0.58 -30.30 5.29 -306.98 -1.62 -31.92 16 21 C -0.33 -18.57 9.68 84.04 0.81 -17.76 16 22 H 0.08 4.85 7.16 -2.91 -0.02 4.83 16 23 C -0.02 -0.88 5.50 84.93 0.47 -0.41 16 24 N -0.93 -51.43 13.05 21.67 0.28 -51.15 16 25 Si 0.99 43.65 29.55 68.60 2.03 45.67 16 26 H -0.27 -11.77 7.11 99.48 0.71 -11.06 16 27 H -0.27 -11.46 7.11 99.48 0.71 -10.75 16 28 H -0.27 -11.72 7.11 99.48 0.71 -11.01 16 29 H 0.05 1.02 8.14 -2.39 -0.02 1.00 16 30 H 0.07 1.06 8.14 -2.39 -0.02 1.04 16 31 H 0.06 1.06 8.14 -2.39 -0.02 1.04 16 32 H 0.06 1.53 8.10 -2.39 -0.02 1.51 16 33 H 0.04 1.23 8.10 -2.39 -0.02 1.21 16 34 H 0.09 2.25 8.14 -2.38 -0.02 2.23 16 35 H 0.12 2.02 8.14 -2.39 -0.02 2.00 16 36 H 0.41 10.02 7.30 -92.71 -0.68 9.35 16 37 H 0.08 1.75 8.14 -2.39 -0.02 1.73 16 38 H 0.05 1.41 6.28 -2.39 -0.02 1.40 16 39 H 0.07 1.24 5.58 -2.39 -0.01 1.22 16 40 H 0.09 1.10 8.14 -2.39 -0.02 1.08 16 41 H 0.08 1.05 8.14 -2.39 -0.02 1.03 16 42 H 0.07 0.98 8.14 -2.39 -0.02 0.96 16 43 H 0.02 0.75 8.14 -2.39 -0.02 0.73 16 44 H 0.06 1.19 8.14 -2.39 -0.02 1.17 16 45 H 0.06 1.50 6.01 -2.39 -0.01 1.49 16 46 H 0.06 1.04 8.14 -2.39 -0.02 1.02 16 47 H 0.07 1.15 8.14 -2.39 -0.02 1.13 16 48 H 0.04 0.91 8.14 -2.39 -0.02 0.89 16 49 H 0.03 0.82 8.14 -2.39 -0.02 0.80 16 50 H 0.05 1.78 6.69 -2.39 -0.02 1.76 16 51 H 0.10 3.30 5.39 -2.38 -0.01 3.28 16 52 H 0.06 1.92 8.00 -2.39 -0.02 1.90 16 53 H 0.39 19.96 7.90 -92.71 -0.73 19.23 16 54 H 0.28 14.43 8.31 -92.71 -0.77 13.66 16 Total: -1.00 -69.79 417.10 1.64 -68.15 By element: Atomic # 1 Polarization: 47.63 SS G_CDS: -0.52 Total: 47.11 kcal Atomic # 6 Polarization: 6.18 SS G_CDS: 6.39 Total: 12.57 kcal Atomic # 7 Polarization: -114.12 SS G_CDS: -6.16 Total: -120.29 kcal Atomic # 8 Polarization: -53.12 SS G_CDS: -0.09 Total: -53.21 kcal Atomic # 14 Polarization: 43.65 SS G_CDS: 2.03 Total: 45.67 kcal Total: -69.79 1.64 -68.15 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001098861912.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -44.483 kcal (2) G-P(sol) polarization free energy of solvation -69.790 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -114.273 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.642 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.148 kcal (6) G-S(sol) free energy of system = (1) + (5) -112.631 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds