Wall clock time and date at job start Sat Apr 11 2020 05:49:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53002 * 109.47317 * 2 1 4 4 C 1.50703 * 109.47372 * 120.00425 * 2 1 3 5 5 O 1.21280 * 119.99432 * 359.97438 * 4 2 1 6 6 N 1.34777 * 119.99939 * 179.97438 * 4 2 1 7 7 C 1.46495 * 119.99757 * 179.97438 * 6 4 2 8 8 C 1.52996 * 109.47305 * 184.91810 * 7 6 4 9 9 H 1.08996 * 109.46896 * 174.11722 * 8 7 6 10 10 C 1.53035 * 109.46379 * 294.09827 * 8 7 6 11 11 C 1.53122 * 109.28404 * 179.20197 * 10 8 7 12 12 C 1.53116 * 109.14921 * 302.33433 * 11 10 8 13 13 C 1.53002 * 109.50379 * 297.71335 * 12 11 10 14 14 C 1.53001 * 109.50301 * 177.59920 * 12 11 10 15 15 C 1.53038 * 109.28256 * 57.65495 * 12 11 10 16 16 N 1.46847 * 109.52299 * 300.81886 * 15 12 11 17 17 C 1.46900 * 111.00155 * 185.83940 * 16 15 12 18 18 C 1.50701 * 109.46963 * 300.29817 * 17 16 15 19 19 O 1.21295 * 120.00221 * 354.61731 * 18 17 16 20 20 N 1.34781 * 120.00029 * 174.61946 * 18 17 16 21 21 C 1.37102 * 119.99968 * 180.02562 * 20 18 17 22 22 H 1.08001 * 119.99504 * 359.97438 * 21 20 18 23 23 C 1.38943 * 119.99973 * 179.97438 * 21 20 18 24 24 N 1.31411 * 120.00224 * 180.02562 * 23 21 20 25 25 Si 1.86804 * 120.00114 * 0.02562 * 23 21 20 26 26 H 1.48500 * 109.47003 * 89.99286 * 25 23 21 27 27 H 1.48492 * 109.46973 * 209.99702 * 25 23 21 28 28 H 1.48501 * 109.46745 * 329.99738 * 25 23 21 29 29 H 1.09003 * 109.47072 * 299.99808 * 1 2 3 30 30 H 1.09004 * 109.47671 * 59.99544 * 1 2 3 31 31 H 1.08993 * 109.47592 * 180.02562 * 1 2 3 32 32 H 1.09001 * 109.46566 * 240.00277 * 2 1 3 33 33 H 1.08999 * 109.46908 * 300.00092 * 3 2 1 34 34 H 1.09001 * 109.47076 * 60.00590 * 3 2 1 35 35 H 1.08998 * 109.47024 * 180.02562 * 3 2 1 36 36 H 0.97002 * 120.00004 * 0.02562 * 6 4 2 37 37 H 1.09006 * 109.47038 * 64.92108 * 7 6 4 38 38 H 1.09001 * 109.47694 * 304.92118 * 7 6 4 39 39 H 1.09005 * 109.50626 * 299.13255 * 10 8 7 40 40 H 1.09008 * 109.50471 * 59.25214 * 10 8 7 41 41 H 1.08990 * 109.52675 * 182.42998 * 11 10 8 42 42 H 1.09002 * 109.57771 * 62.26207 * 11 10 8 43 43 H 1.08997 * 109.47541 * 179.80480 * 13 12 11 44 44 H 1.09000 * 109.47039 * 299.80968 * 13 12 11 45 45 H 1.08999 * 109.47406 * 59.80246 * 13 12 11 46 46 H 1.08999 * 109.46761 * 300.18999 * 14 12 11 47 47 H 1.09003 * 109.47227 * 60.19323 * 14 12 11 48 48 H 1.08999 * 109.47465 * 180.19564 * 14 12 11 49 49 H 1.08998 * 109.46426 * 180.80642 * 15 12 11 50 50 H 1.08995 * 109.45108 * 60.83440 * 15 12 11 51 51 H 1.08998 * 109.47349 * 60.29116 * 17 16 15 52 52 H 1.08999 * 109.47157 * 180.29851 * 17 16 15 53 53 H 0.96999 * 119.99608 * 359.97438 * 20 18 17 54 54 H 0.97001 * 120.00227 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0324 -0.7105 1.2304 5 8 1.2442 -1.1710 2.0289 6 7 3.3574 -0.8341 1.4434 7 6 3.8458 -1.5243 2.6397 8 6 5.3708 -1.4187 2.7027 9 1 5.7256 -1.8400 3.6432 10 6 5.9842 -2.1928 1.5337 11 6 7.5093 -2.0679 1.5893 12 6 7.8937 -0.5863 1.5487 13 6 7.4237 0.0274 0.2284 14 6 9.4132 -0.4495 1.6641 15 6 7.2250 0.1415 2.7171 16 7 5.7674 -0.0073 2.6183 17 6 5.0857 0.7933 3.6441 18 6 5.5318 0.3430 5.0113 19 8 6.2620 -0.6189 5.1248 20 7 5.1194 1.0090 6.1081 21 6 5.5256 0.5995 7.3519 22 1 6.1758 -0.2569 7.4528 23 6 5.1009 1.2864 8.4825 24 7 5.4907 0.8943 9.6747 25 14 3.9757 2.7673 8.3080 26 1 2.5599 2.3211 8.3511 27 1 4.2299 3.7161 9.4216 28 1 4.2427 3.4418 7.0122 29 1 -0.3633 0.5138 0.8900 30 1 -0.3634 0.5139 -0.8899 31 1 -0.3634 -1.0276 0.0005 32 1 1.8932 -0.5138 -0.8900 33 1 1.6767 1.9563 -0.8900 34 1 1.6768 1.9563 0.8900 35 1 3.1300 1.4424 -0.0005 36 1 3.9878 -0.4654 0.8049 37 1 3.5557 -2.5742 2.5973 38 1 3.4127 -1.0633 3.5275 39 1 5.7025 -3.2434 1.6051 40 1 5.6193 -1.7807 0.5928 41 1 7.9483 -2.5817 0.7342 42 1 7.8790 -2.5149 2.5121 43 1 7.6945 1.0829 0.2015 44 1 7.9002 -0.4913 -0.6034 45 1 6.3414 -0.0721 0.1463 46 1 9.7471 -0.8885 2.6043 47 1 9.8890 -0.9680 0.8317 48 1 9.6861 0.6055 1.6387 49 1 7.4852 1.1994 2.6828 50 1 7.5710 -0.2873 3.6576 51 1 5.3353 1.8457 3.5090 52 1 4.0078 0.6607 3.5516 53 1 4.5357 1.7784 6.0173 54 1 5.1938 1.3736 10.4640 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001098905161.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:49:14 Heat of formation + Delta-G solvation = -106.951266 kcal Electronic energy + Delta-G solvation = -32411.401893 eV Core-core repulsion = 28381.520542 eV Total energy + Delta-G solvation = -4029.881351 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 339.231 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -41.77176 -40.61581 -39.54987 -36.78785 -36.09758 -35.35644 -34.72590 -33.81738 -32.94630 -29.28885 -29.19008 -27.97002 -27.82994 -26.52521 -25.54823 -24.07734 -23.79152 -21.76814 -21.22736 -20.86868 -20.14318 -19.30229 -18.13714 -17.70899 -17.20058 -16.98586 -16.71116 -16.25133 -16.10145 -15.75846 -15.46367 -15.24218 -15.19140 -14.93005 -14.80252 -14.57791 -14.49381 -14.02512 -13.93597 -13.64739 -13.42551 -13.16884 -13.13566 -13.05777 -12.94434 -12.81751 -12.66886 -12.58275 -12.47058 -12.25256 -12.21686 -12.05172 -11.96876 -11.88643 -11.79686 -11.37580 -11.35657 -11.09918 -11.04402 -10.96756 -10.68014 -10.25287 -9.98252 -9.04409 -8.46906 -6.06581 1.24034 1.29686 1.37798 1.74877 1.86965 2.16960 2.31883 2.89637 2.93272 3.10358 3.70227 3.76832 3.83257 3.93135 4.06557 4.08848 4.15858 4.17818 4.19569 4.35952 4.50501 4.53013 4.57332 4.60283 4.69560 4.71569 4.75664 4.84473 4.87954 4.94979 4.98342 4.99438 5.02415 5.03723 5.13783 5.15925 5.17362 5.18635 5.29357 5.38223 5.38644 5.43085 5.46312 5.47325 5.52840 5.53343 5.75464 5.88870 6.00469 6.08723 6.52491 6.72035 6.83401 7.34149 7.39493 7.89509 8.70613 Molecular weight = 339.23amu Principal moments of inertia in cm(-1) A = 0.007947 B = 0.004572 C = 0.003260 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3522.308689 B = 6122.981306 C = 8587.209053 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.106 4.106 3 C -0.141 4.141 4 C 0.504 3.496 5 O -0.597 6.597 6 N -0.696 5.696 7 C 0.134 3.866 8 C 0.060 3.940 9 H 0.051 0.949 10 C -0.100 4.100 11 C -0.107 4.107 12 C -0.056 4.056 13 C -0.123 4.123 14 C -0.139 4.139 15 C 0.051 3.949 16 N -0.475 5.475 17 C 0.043 3.957 18 C 0.418 3.582 19 O -0.607 6.607 20 N -0.590 5.590 21 C -0.326 4.326 22 H 0.056 0.944 23 C -0.012 4.012 24 N -0.932 5.932 25 Si 0.958 3.042 26 H -0.262 1.262 27 H -0.272 1.272 28 H -0.232 1.232 29 H 0.041 0.959 30 H 0.087 0.913 31 H 0.045 0.955 32 H 0.123 0.877 33 H 0.087 0.913 34 H 0.045 0.955 35 H 0.075 0.925 36 H 0.418 0.582 37 H 0.062 0.938 38 H 0.038 0.962 39 H 0.067 0.933 40 H 0.093 0.907 41 H 0.083 0.917 42 H 0.032 0.968 43 H 0.053 0.947 44 H 0.060 0.940 45 H 0.070 0.930 46 H 0.032 0.968 47 H 0.073 0.927 48 H 0.059 0.941 49 H 0.070 0.930 50 H 0.027 0.973 51 H 0.119 0.881 52 H 0.104 0.896 53 H 0.386 0.614 54 H 0.279 0.721 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.453 3.370 -28.036 28.344 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.127 4.127 3 C -0.198 4.198 4 C 0.293 3.707 5 O -0.478 6.478 6 N -0.349 5.349 7 C 0.009 3.991 8 C -0.049 4.049 9 H 0.069 0.931 10 C -0.137 4.137 11 C -0.145 4.145 12 C -0.056 4.056 13 C -0.180 4.180 14 C -0.196 4.196 15 C -0.076 4.076 16 N -0.198 5.198 17 C -0.089 4.089 18 C 0.206 3.794 19 O -0.492 6.492 20 N -0.231 5.231 21 C -0.455 4.455 22 H 0.074 0.926 23 C -0.211 4.211 24 N -0.573 5.573 25 Si 0.779 3.221 26 H -0.187 1.187 27 H -0.197 1.197 28 H -0.155 1.155 29 H 0.060 0.940 30 H 0.105 0.895 31 H 0.064 0.936 32 H 0.141 0.859 33 H 0.106 0.894 34 H 0.064 0.936 35 H 0.094 0.906 36 H 0.257 0.743 37 H 0.080 0.920 38 H 0.056 0.944 39 H 0.085 0.915 40 H 0.111 0.889 41 H 0.102 0.898 42 H 0.051 0.949 43 H 0.072 0.928 44 H 0.079 0.921 45 H 0.089 0.911 46 H 0.051 0.949 47 H 0.091 0.909 48 H 0.078 0.922 49 H 0.089 0.911 50 H 0.046 0.954 51 H 0.137 0.863 52 H 0.122 0.878 53 H 0.221 0.779 54 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -2.629 2.597 -27.648 27.894 hybrid contribution 0.106 0.210 2.249 2.261 sum -2.523 2.807 -25.399 25.678 Atomic orbital electron populations 1.21618 0.93237 1.01868 1.02296 1.21343 0.97715 0.98221 0.95430 1.21800 1.02216 0.92707 1.03124 1.21509 0.82030 0.78930 0.88277 1.90694 1.56716 1.51129 1.49263 1.45783 1.06844 1.57632 1.24654 1.21169 0.93133 0.96767 0.88010 1.22054 0.92773 0.89996 1.00047 0.93145 1.21597 0.95238 0.99177 0.97726 1.21611 0.95693 0.95931 1.01224 1.20543 0.94702 0.94702 0.95691 1.21725 1.02173 1.00038 0.94073 1.21813 0.94614 1.01972 1.01232 1.22332 0.87012 1.00273 0.98023 1.62519 1.07179 1.07810 1.42244 1.22285 1.00973 1.00470 0.85132 1.22282 0.84035 0.85145 0.87947 1.90472 1.41102 1.30519 1.87147 1.42289 1.45736 1.29386 1.05726 1.18993 1.29395 1.14042 0.83071 0.92576 1.26058 0.99350 1.01861 0.93837 1.69795 1.46051 1.42572 0.98879 0.85453 0.78619 0.77849 0.80213 1.18703 1.19680 1.15482 0.94013 0.89454 0.93554 0.85870 0.89413 0.93590 0.90642 0.74285 0.92015 0.94385 0.91452 0.88894 0.89808 0.94876 0.92785 0.92089 0.91097 0.94890 0.90850 0.92242 0.91131 0.95427 0.86342 0.87760 0.77857 0.91157 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.20 8.48 71.98 0.61 -1.58 16 2 C -0.11 -1.56 3.26 -11.54 -0.04 -1.60 16 3 C -0.14 -1.57 9.09 71.98 0.65 -0.91 16 4 C 0.50 12.04 7.15 87.66 0.63 12.67 16 5 O -0.60 -20.64 15.98 -3.03 -0.05 -20.69 16 6 N -0.70 -14.54 4.95 -463.06 -2.29 -16.83 16 7 C 0.13 3.77 4.55 86.38 0.39 4.16 16 8 C 0.06 1.69 1.71 44.94 0.08 1.77 16 9 H 0.05 1.98 5.69 -2.39 -0.01 1.96 16 10 C -0.10 -2.08 4.91 30.65 0.15 -1.93 16 11 C -0.11 -2.31 4.79 30.67 0.15 -2.16 16 12 C -0.06 -1.17 0.77 -52.13 -0.04 -1.21 16 13 C -0.12 -1.82 8.04 71.98 0.58 -1.24 16 14 C -0.14 -2.80 8.48 71.98 0.61 -2.19 16 15 C 0.05 1.45 3.72 86.33 0.32 1.77 16 16 N -0.48 -12.34 3.45 -875.66 -3.02 -15.36 16 17 C 0.04 1.31 5.44 85.56 0.47 1.78 16 18 C 0.42 18.37 7.18 87.66 0.63 19.00 16 19 O -0.61 -31.43 11.22 -3.08 -0.03 -31.46 16 20 N -0.59 -28.13 5.09 -306.98 -1.56 -29.70 16 21 C -0.33 -19.20 10.16 84.04 0.85 -18.35 16 22 H 0.06 3.92 7.39 -2.91 -0.02 3.90 16 23 C -0.01 -0.68 5.50 84.92 0.47 -0.21 16 24 N -0.93 -56.93 13.96 21.66 0.30 -56.63 16 25 Si 0.96 40.02 27.74 68.60 1.90 41.92 16 26 H -0.26 -10.66 7.11 99.48 0.71 -9.95 16 27 H -0.27 -11.16 7.11 99.48 0.71 -10.45 16 28 H -0.23 -8.18 6.52 99.48 0.65 -7.53 16 29 H 0.04 0.85 8.10 -2.39 -0.02 0.83 16 30 H 0.09 0.93 8.14 -2.38 -0.02 0.91 16 31 H 0.05 0.89 8.10 -2.39 -0.02 0.87 16 32 H 0.12 1.15 8.14 -2.39 -0.02 1.13 16 33 H 0.09 0.62 8.14 -2.39 -0.02 0.60 16 34 H 0.04 0.67 8.14 -2.39 -0.02 0.65 16 35 H 0.07 0.69 7.57 -2.39 -0.02 0.67 16 36 H 0.42 6.41 6.71 -92.71 -0.62 5.79 16 37 H 0.06 1.80 8.14 -2.38 -0.02 1.78 16 38 H 0.04 1.32 6.58 -2.39 -0.02 1.31 16 39 H 0.07 1.38 8.14 -2.38 -0.02 1.36 16 40 H 0.09 1.46 5.56 -2.38 -0.01 1.45 16 41 H 0.08 1.42 8.14 -2.39 -0.02 1.40 16 42 H 0.03 0.91 8.14 -2.39 -0.02 0.89 16 43 H 0.05 0.78 8.14 -2.39 -0.02 0.76 16 44 H 0.06 0.73 8.14 -2.39 -0.02 0.72 16 45 H 0.07 0.97 6.01 -2.39 -0.01 0.95 16 46 H 0.03 0.80 8.14 -2.39 -0.02 0.78 16 47 H 0.07 1.19 8.14 -2.39 -0.02 1.17 16 48 H 0.06 1.13 8.14 -2.39 -0.02 1.11 16 49 H 0.07 1.88 8.12 -2.39 -0.02 1.86 16 50 H 0.03 1.07 5.68 -2.39 -0.01 1.06 16 51 H 0.12 2.96 8.14 -2.39 -0.02 2.94 16 52 H 0.10 3.03 6.02 -2.39 -0.01 3.02 16 53 H 0.39 15.71 5.76 -92.71 -0.53 15.17 16 54 H 0.28 15.60 8.31 -92.71 -0.77 14.83 16 Total: -1.00 -78.51 405.91 1.44 -77.07 By element: Atomic # 1 Polarization: 42.26 SS G_CDS: -0.32 Total: 41.94 kcal Atomic # 6 Polarization: 3.24 SS G_CDS: 6.51 Total: 9.74 kcal Atomic # 7 Polarization: -111.95 SS G_CDS: -6.57 Total: -118.52 kcal Atomic # 8 Polarization: -52.07 SS G_CDS: -0.08 Total: -52.15 kcal Atomic # 14 Polarization: 40.02 SS G_CDS: 1.90 Total: 41.92 kcal Total: -78.51 1.44 -77.07 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001098905161.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -29.883 kcal (2) G-P(sol) polarization free energy of solvation -78.505 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -108.388 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.437 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.069 kcal (6) G-S(sol) free energy of system = (1) + (5) -106.951 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds