Wall clock time and date at job start Sat Apr 11 2020 05:49:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52999 * 109.47015 * 2 1 4 4 H 1.08996 * 109.46929 * 304.99025 * 3 2 1 5 5 C 1.52997 * 109.47317 * 64.99921 * 3 2 1 6 6 C 1.53006 * 109.46623 * 184.99741 * 3 2 1 7 7 C 1.52999 * 109.46811 * 174.99875 * 6 3 2 8 8 C 1.50696 * 109.47144 * 180.02562 * 7 6 3 9 9 O 1.21283 * 119.99862 * 359.97438 * 8 7 6 10 10 N 1.34774 * 120.00235 * 180.02562 * 8 7 6 11 11 C 1.46506 * 119.99982 * 180.02562 * 10 8 7 12 12 C 1.52999 * 109.46891 * 179.97438 * 11 10 8 13 13 C 1.53786 * 113.61547 * 274.13306 * 12 11 10 14 14 C 1.53952 * 87.02000 * 220.04786 * 13 12 11 15 15 N 1.46901 * 113.74141 * 139.94275 * 14 13 12 16 16 C 1.46900 * 110.99909 * 107.40139 * 15 14 13 17 17 C 1.50698 * 109.46779 * 180.02562 * 16 15 14 18 18 O 1.21293 * 120.00437 * 0.02562 * 17 16 15 19 19 N 1.34780 * 119.99868 * 180.02562 * 17 16 15 20 20 C 1.37100 * 120.00200 * 180.02562 * 19 17 16 21 21 H 1.07996 * 119.99936 * 359.97438 * 20 19 17 22 22 C 1.38951 * 120.00063 * 179.97438 * 20 19 17 23 23 N 1.31407 * 119.99897 * 179.97438 * 22 20 19 24 24 Si 1.86805 * 119.99960 * 359.97438 * 22 20 19 25 25 H 1.48497 * 109.47216 * 90.00122 * 24 22 20 26 26 H 1.48500 * 109.47160 * 210.00116 * 24 22 20 27 27 H 1.48497 * 109.47114 * 330.00153 * 24 22 20 28 28 C 1.53780 * 113.61430 * 176.52807 * 12 11 10 29 29 H 1.09000 * 109.46883 * 59.99966 * 1 2 3 30 30 H 1.09001 * 109.47405 * 179.97438 * 1 2 3 31 31 H 1.08994 * 109.47229 * 300.00420 * 1 2 3 32 32 H 1.08994 * 109.47229 * 239.99579 * 2 1 3 33 33 H 1.08998 * 109.46376 * 120.00020 * 2 1 3 34 34 H 1.09002 * 109.47153 * 299.99641 * 5 3 2 35 35 H 1.09001 * 109.46832 * 179.97438 * 5 3 2 36 36 H 1.09004 * 109.47261 * 59.99813 * 5 3 2 37 37 H 1.09001 * 109.47326 * 294.99995 * 6 3 2 38 38 H 1.09000 * 109.46904 * 55.00348 * 6 3 2 39 39 H 1.09001 * 109.47273 * 300.00152 * 7 6 3 40 40 H 1.08998 * 109.47609 * 60.00099 * 7 6 3 41 41 H 0.96997 * 120.00130 * 0.02562 * 10 8 7 42 42 H 1.08997 * 109.47166 * 299.99459 * 11 10 8 43 43 H 1.08992 * 109.47193 * 59.99950 * 11 10 8 44 44 H 1.09004 * 112.85376 * 45.33176 * 12 11 10 45 45 H 1.08994 * 113.61172 * 334.57046 * 13 12 11 46 46 H 1.09004 * 113.60877 * 105.47141 * 13 12 11 47 47 H 1.08998 * 113.53894 * 270.80892 * 14 13 12 48 48 H 1.00906 * 110.99729 * 343.44909 * 15 14 13 49 49 H 1.08998 * 109.47353 * 300.00289 * 16 15 14 50 50 H 1.09000 * 109.47038 * 60.00438 * 16 15 14 51 51 H 0.97005 * 119.99829 * 359.97438 * 19 17 16 52 52 H 0.97005 * 119.99740 * 179.97438 * 23 22 20 53 53 H 1.09003 * 113.61330 * 254.53276 * 28 12 11 54 54 H 1.09002 * 113.61360 * 25.42827 * 28 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6055 1.9814 -0.8419 5 6 1.6352 2.1266 1.3073 6 6 3.5649 1.4442 -0.1257 7 6 4.0646 2.8849 -0.2511 8 6 5.5664 2.8866 -0.3755 9 8 6.1770 1.8388 -0.3644 10 7 6.2311 4.0526 -0.4981 11 6 7.6911 4.0542 -0.6196 12 6 8.1908 5.4949 -0.7449 13 6 8.1801 6.0273 -2.1876 14 6 9.5268 6.6995 -1.8641 15 7 10.5019 6.6282 -2.9606 16 6 10.6722 7.9398 -3.5998 17 6 11.6769 7.8272 -4.7173 18 8 12.1993 6.7593 -4.9580 19 7 11.9950 8.9132 -5.4495 20 6 12.9086 8.8107 -6.4665 21 1 13.3738 7.8599 -6.6808 22 6 13.2362 9.9302 -7.2216 23 7 14.1123 9.8321 -8.1961 24 14 12.4311 11.5747 -6.8515 25 1 13.2493 12.3136 -5.8566 26 1 12.3337 12.3706 -8.1014 27 1 11.0703 11.3472 -6.3022 28 6 9.7233 5.6133 -0.7934 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3634 -1.0277 -0.0005 31 1 -0.3633 0.5139 0.8899 32 1 1.8934 -0.5139 -0.8899 33 1 1.8932 -0.5138 0.8900 34 1 0.5489 2.1253 1.3968 35 1 1.9990 3.1541 1.3074 36 1 2.0698 1.5875 2.1492 37 1 4.0030 0.9835 0.7597 38 1 3.8571 0.8799 -1.0113 39 1 3.6265 3.3456 -1.1365 40 1 3.7724 3.4493 0.6344 41 1 5.7429 4.8907 -0.5058 42 1 8.1298 3.5928 0.2651 43 1 7.9826 3.4906 -1.5057 44 1 7.7233 6.1690 -0.0272 45 1 8.2530 5.2445 -2.9424 46 1 7.3746 6.7345 -2.3860 47 1 9.4245 7.7040 -1.4535 48 1 10.2351 5.9283 -3.6367 49 1 9.7165 8.2742 -4.0032 50 1 11.0274 8.6599 -2.8626 51 1 11.5769 9.7672 -5.2573 52 1 14.3406 10.6135 -8.7235 53 1 10.1619 5.9866 0.1320 54 1 10.2189 4.7170 -1.1665 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001100780360.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:49:28 Heat of formation + Delta-G solvation = -107.179704 kcal Electronic energy + Delta-G solvation = -28110.328839 eV Core-core repulsion = 24080.437582 eV Total energy + Delta-G solvation = -4029.891257 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 339.231 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -41.03342 -40.43559 -39.78985 -38.01544 -36.24104 -35.80451 -34.44213 -33.72484 -33.19985 -30.11851 -29.11911 -27.90424 -26.57402 -26.44487 -25.50247 -23.51065 -22.38798 -21.49346 -21.29668 -20.73520 -20.59634 -20.00494 -18.06077 -17.70280 -17.09324 -17.00421 -16.88780 -16.49089 -16.29199 -15.97772 -15.66785 -15.48878 -15.27013 -15.02150 -14.76562 -14.46653 -14.33250 -14.26303 -14.07768 -13.94840 -13.59481 -13.35113 -13.32359 -13.02589 -12.85372 -12.79145 -12.68288 -12.57764 -12.48134 -12.41104 -11.98649 -11.86092 -11.85005 -11.52245 -11.49249 -11.46442 -11.39259 -11.29475 -11.27205 -10.77598 -10.41621 -10.25015 -10.05799 -9.20016 -8.41347 -6.02714 1.30284 1.36593 1.45386 1.68061 1.96055 2.23609 2.24852 2.77386 3.15097 3.41731 3.60172 3.64389 3.80765 3.82618 3.96394 3.97219 4.05340 4.17422 4.19350 4.29454 4.33375 4.44853 4.46099 4.49016 4.57162 4.59094 4.66993 4.72536 4.74146 4.79108 4.87797 4.90013 4.91730 4.95461 5.09700 5.12741 5.15212 5.19697 5.24144 5.24982 5.26106 5.33944 5.40636 5.51908 5.56059 5.58912 5.59806 5.93009 6.19042 6.41014 6.60301 6.60794 6.88152 7.31595 7.39847 7.97133 8.76528 Molecular weight = 339.23amu Principal moments of inertia in cm(-1) A = 0.022778 B = 0.001338 C = 0.001317 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1228.966229 B =20928.173983 C =21252.274069 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.124 4.124 3 C -0.087 4.087 4 H 0.079 0.921 5 C -0.151 4.151 6 C -0.098 4.098 7 C -0.133 4.133 8 C 0.501 3.499 9 O -0.595 6.595 10 N -0.716 5.716 11 C 0.132 3.868 12 C -0.100 4.100 13 C -0.158 4.158 14 C 0.064 3.936 15 N -0.680 5.680 16 C 0.063 3.937 17 C 0.445 3.555 18 O -0.618 6.618 19 N -0.590 5.590 20 C -0.332 4.332 21 H 0.053 0.947 22 C -0.015 4.015 23 N -0.935 5.935 24 Si 0.967 3.033 25 H -0.257 1.257 26 H -0.275 1.275 27 H -0.229 1.229 28 C -0.122 4.122 29 H 0.056 0.944 30 H 0.052 0.948 31 H 0.062 0.938 32 H 0.053 0.947 33 H 0.056 0.944 34 H 0.062 0.938 35 H 0.067 0.933 36 H 0.048 0.952 37 H 0.051 0.949 38 H 0.048 0.952 39 H 0.115 0.885 40 H 0.120 0.880 41 H 0.417 0.583 42 H 0.057 0.943 43 H 0.045 0.955 44 H 0.125 0.875 45 H 0.068 0.932 46 H 0.087 0.913 47 H 0.118 0.882 48 H 0.343 0.657 49 H 0.079 0.921 50 H 0.116 0.884 51 H 0.391 0.609 52 H 0.279 0.721 53 H 0.080 0.920 54 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -31.943 -5.789 23.156 39.875 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.162 4.162 3 C -0.106 4.106 4 H 0.098 0.902 5 C -0.208 4.208 6 C -0.136 4.136 7 C -0.172 4.172 8 C 0.290 3.710 9 O -0.476 6.476 10 N -0.369 5.369 11 C 0.008 3.992 12 C -0.119 4.119 13 C -0.197 4.197 14 C -0.046 4.046 15 N -0.311 5.311 16 C -0.069 4.069 17 C 0.233 3.767 18 O -0.503 6.503 19 N -0.232 5.232 20 C -0.461 4.461 21 H 0.071 0.929 22 C -0.213 4.213 23 N -0.576 5.576 24 Si 0.787 3.213 25 H -0.181 1.181 26 H -0.200 1.200 27 H -0.152 1.152 28 C -0.161 4.161 29 H 0.075 0.925 30 H 0.071 0.929 31 H 0.081 0.919 32 H 0.072 0.928 33 H 0.074 0.926 34 H 0.081 0.919 35 H 0.086 0.914 36 H 0.067 0.933 37 H 0.070 0.930 38 H 0.067 0.933 39 H 0.133 0.867 40 H 0.138 0.862 41 H 0.255 0.745 42 H 0.075 0.925 43 H 0.063 0.937 44 H 0.143 0.857 45 H 0.087 0.913 46 H 0.106 0.894 47 H 0.136 0.864 48 H 0.162 0.838 49 H 0.096 0.904 50 H 0.134 0.866 51 H 0.226 0.774 52 H 0.089 0.911 53 H 0.099 0.901 54 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -30.471 -7.063 23.235 38.965 hybrid contribution -0.314 0.751 -1.135 1.397 sum -30.786 -6.312 22.100 38.419 Atomic orbital electron populations 1.21808 0.95099 1.01732 1.02245 1.21589 0.96514 0.96517 1.01531 1.21155 0.93684 0.96346 0.99375 0.90246 1.21955 1.01760 1.00804 0.96274 1.21346 0.95457 0.95137 1.01650 1.21774 0.88981 1.00032 1.06428 1.21485 0.91765 0.83083 0.74688 1.90704 1.71378 1.33442 1.52072 1.45955 1.07615 1.09335 1.73973 1.21235 0.80187 0.97081 1.00695 1.22543 0.96560 0.94823 0.97998 1.23770 0.98846 1.00500 0.96598 1.23240 0.89170 0.99991 0.92183 1.60030 1.50671 1.05989 1.14454 1.21684 0.96786 0.93804 0.94615 1.21139 0.86316 0.83744 0.85482 1.90548 1.57685 1.29930 1.72111 1.42028 1.39633 1.10694 1.30827 1.19021 1.19377 0.97652 1.10093 0.92931 1.26146 0.97046 1.03194 0.94944 1.69813 1.33927 1.32661 1.21207 0.85340 0.80210 0.76640 0.79157 1.18107 1.20039 1.15209 1.23057 0.94872 0.99048 0.99172 0.92493 0.92912 0.91943 0.92772 0.92569 0.91854 0.91370 0.93306 0.92998 0.93295 0.86683 0.86211 0.74534 0.92486 0.93655 0.85735 0.91314 0.89400 0.86370 0.83761 0.90361 0.86634 0.77369 0.91133 0.90094 0.91357 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.22 9.67 71.98 0.70 -0.52 16 2 C -0.12 -1.26 5.40 30.60 0.17 -1.10 16 3 C -0.09 -0.76 2.39 -10.79 -0.03 -0.79 16 4 H 0.08 0.58 8.14 -2.39 -0.02 0.56 16 5 C -0.15 -0.99 8.70 71.98 0.63 -0.36 16 6 C -0.10 -1.26 3.97 30.60 0.12 -1.14 16 7 C -0.13 -1.22 5.45 29.85 0.16 -1.06 16 8 C 0.50 8.70 7.83 87.66 0.69 9.39 16 9 O -0.60 -16.79 15.98 -3.04 -0.05 -16.84 16 10 N -0.72 -8.90 5.56 -463.07 -2.57 -11.47 16 11 C 0.13 2.14 5.50 86.38 0.48 2.62 16 12 C -0.10 -1.19 3.75 -10.27 -0.04 -1.23 16 13 C -0.16 -2.27 7.26 31.18 0.23 -2.04 16 14 C 0.06 1.16 4.18 45.50 0.19 1.35 16 15 N -0.68 -19.38 6.24 -492.56 -3.08 -22.46 16 16 C 0.06 1.85 6.01 85.56 0.51 2.37 16 17 C 0.45 20.10 7.82 87.66 0.69 20.79 16 18 O -0.62 -34.86 15.78 -3.07 -0.05 -34.91 16 19 N -0.59 -27.74 5.09 -306.98 -1.56 -29.30 16 20 C -0.33 -19.61 10.16 84.04 0.85 -18.75 16 21 H 0.05 3.72 7.39 -2.91 -0.02 3.70 16 22 C -0.01 -0.82 5.50 84.93 0.47 -0.35 16 23 N -0.94 -56.65 13.96 21.66 0.30 -56.34 16 24 Si 0.97 38.31 27.74 68.60 1.90 40.21 16 25 H -0.26 -9.63 7.11 99.48 0.71 -8.93 16 26 H -0.28 -10.84 7.11 99.48 0.71 -10.13 16 27 H -0.23 -7.50 6.52 99.48 0.65 -6.85 16 28 C -0.12 -2.10 7.44 31.12 0.23 -1.87 16 29 H 0.06 0.42 8.14 -2.39 -0.02 0.40 16 30 H 0.05 0.42 8.14 -2.39 -0.02 0.40 16 31 H 0.06 0.43 6.56 -2.39 -0.02 0.41 16 32 H 0.05 0.63 8.14 -2.39 -0.02 0.61 16 33 H 0.06 0.63 8.14 -2.39 -0.02 0.61 16 34 H 0.06 0.35 6.57 -2.39 -0.02 0.34 16 35 H 0.07 0.28 6.56 -2.39 -0.02 0.26 16 36 H 0.05 0.39 8.14 -2.38 -0.02 0.37 16 37 H 0.05 0.85 8.10 -2.39 -0.02 0.83 16 38 H 0.05 0.83 8.10 -2.39 -0.02 0.81 16 39 H 0.12 0.58 8.14 -2.39 -0.02 0.56 16 40 H 0.12 0.51 6.56 -2.39 -0.02 0.50 16 41 H 0.42 2.17 8.47 -92.71 -0.79 1.38 16 42 H 0.06 1.07 8.14 -2.39 -0.02 1.05 16 43 H 0.05 0.97 7.87 -2.39 -0.02 0.95 16 44 H 0.12 0.84 8.14 -2.38 -0.02 0.82 16 45 H 0.07 1.27 7.61 -2.39 -0.02 1.25 16 46 H 0.09 0.93 8.14 -2.38 -0.02 0.91 16 47 H 0.12 1.66 7.87 -2.39 -0.02 1.64 16 48 H 0.34 10.84 7.91 -89.69 -0.71 10.13 16 49 H 0.08 1.82 8.14 -2.39 -0.02 1.80 16 50 H 0.12 2.79 8.13 -2.39 -0.02 2.77 16 51 H 0.39 14.94 5.76 -92.70 -0.53 14.41 16 52 H 0.28 15.41 8.31 -92.70 -0.77 14.64 16 53 H 0.08 1.24 8.14 -2.39 -0.02 1.22 16 54 H 0.07 1.50 8.10 -2.39 -0.02 1.48 16 Total: -1.00 -84.65 429.70 -0.25 -84.90 By element: Atomic # 1 Polarization: 40.10 SS G_CDS: -1.19 Total: 38.91 kcal Atomic # 6 Polarization: 1.26 SS G_CDS: 6.04 Total: 7.30 kcal Atomic # 7 Polarization: -112.66 SS G_CDS: -6.91 Total: -119.57 kcal Atomic # 8 Polarization: -51.65 SS G_CDS: -0.10 Total: -51.75 kcal Atomic # 14 Polarization: 38.31 SS G_CDS: 1.90 Total: 40.21 kcal Total: -84.65 -0.25 -84.90 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001100780360.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.279 kcal (2) G-P(sol) polarization free energy of solvation -84.648 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -106.927 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.253 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.901 kcal (6) G-S(sol) free energy of system = (1) + (5) -107.180 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds