Wall clock time and date at job start Sat Apr 11 2020 05:49:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52992 * 109.47003 * 2 1 4 4 H 1.09005 * 109.47407 * 305.37951 * 3 2 1 5 5 C 1.53002 * 109.47141 * 185.37789 * 3 2 1 6 6 C 1.53001 * 109.46979 * 64.99867 * 5 3 2 7 7 C 1.53002 * 109.47194 * 65.00068 * 6 5 3 8 8 C 1.52995 * 109.47082 * 185.00072 * 6 5 3 9 9 C 1.50706 * 109.47344 * 65.37877 * 3 2 1 10 10 O 1.21283 * 119.99313 * 34.02969 * 9 3 2 11 11 N 1.34767 * 119.99966 * 214.02612 * 9 3 2 12 12 C 1.47081 * 120.88555 * 354.54272 * 11 9 3 13 13 C 1.53238 * 108.52184 * 129.08458 * 12 11 9 14 14 N 1.46901 * 109.33690 * 53.83456 * 13 12 11 15 15 C 1.46908 * 110.99755 * 172.74265 * 14 13 12 16 16 C 1.50697 * 109.47171 * 294.30184 * 15 14 13 17 17 O 1.21291 * 120.00280 * 359.97438 * 16 15 14 18 18 N 1.34776 * 119.99732 * 180.02562 * 16 15 14 19 19 C 1.37103 * 120.00017 * 179.97438 * 18 16 15 20 20 H 1.08001 * 119.99660 * 359.97438 * 19 18 16 21 21 C 1.38941 * 120.00331 * 179.97438 * 19 18 16 22 22 N 1.31414 * 120.00134 * 0.02562 * 21 19 18 23 23 Si 1.86796 * 120.00316 * 180.02562 * 21 19 18 24 24 H 1.48503 * 109.47341 * 60.00181 * 23 21 19 25 25 H 1.48500 * 109.47541 * 180.02562 * 23 21 19 26 26 H 1.48500 * 109.47137 * 300.00016 * 23 21 19 27 27 C 1.46899 * 111.26939 * 296.88986 * 14 13 12 28 28 C 1.47082 * 120.88221 * 174.81984 * 11 9 3 29 29 H 1.09003 * 109.47087 * 294.97371 * 1 2 3 30 30 H 1.08996 * 109.47398 * 54.97328 * 1 2 3 31 31 H 1.09003 * 109.47301 * 174.97941 * 1 2 3 32 32 H 1.09001 * 109.46854 * 240.00059 * 2 1 3 33 33 H 1.08997 * 109.46817 * 120.00051 * 2 1 3 34 34 H 1.08994 * 109.47541 * 184.99882 * 5 3 2 35 35 H 1.09002 * 109.46911 * 305.00149 * 5 3 2 36 36 H 1.09002 * 109.47143 * 305.00492 * 6 5 3 37 37 H 1.08993 * 109.47256 * 179.97438 * 7 6 5 38 38 H 1.08999 * 109.47249 * 300.00587 * 7 6 5 39 39 H 1.09002 * 109.46729 * 60.00171 * 7 6 5 40 40 H 1.08996 * 109.47380 * 60.00073 * 8 6 5 41 41 H 1.09003 * 109.47346 * 180.02562 * 8 6 5 42 42 H 1.09002 * 109.47475 * 300.00217 * 8 6 5 43 43 H 1.09003 * 109.62863 * 248.79942 * 12 11 9 44 44 H 1.09003 * 109.62380 * 9.37569 * 12 11 9 45 45 H 1.08998 * 109.49745 * 293.87485 * 13 12 11 46 46 H 1.09000 * 109.49061 * 173.79105 * 13 12 11 47 47 H 1.09002 * 109.46988 * 54.29902 * 15 14 13 48 48 H 1.08999 * 109.46955 * 174.29704 * 15 14 13 49 49 H 0.96998 * 120.00078 * 359.97438 * 18 16 15 50 50 H 0.96997 * 120.00595 * 179.97438 * 22 21 19 51 51 H 1.08995 * 109.49242 * 303.14788 * 27 14 13 52 52 H 1.09000 * 109.49240 * 183.06865 * 27 14 13 53 53 H 1.09008 * 109.62305 * 350.62499 * 28 11 9 54 54 H 1.09006 * 109.62672 * 111.19896 * 28 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4424 0.0000 4 1 1.6001 1.9834 -0.8379 5 6 3.5640 1.4446 -0.1352 6 6 3.9556 0.8768 -1.5009 7 6 3.4500 1.8082 -2.6045 8 6 5.4788 0.7626 -1.5880 9 6 1.6493 2.1134 1.2917 10 8 1.6084 1.4717 2.3200 11 7 1.3455 3.4263 1.3040 12 6 1.5031 4.2491 0.0950 13 6 0.1968 5.0126 -0.1478 14 7 -0.1651 5.7559 1.0665 15 6 -1.3160 6.6356 0.8218 16 6 -0.9275 7.7090 -0.1621 17 8 0.1974 7.7386 -0.6146 18 7 -1.8299 8.6366 -0.5384 19 6 -1.4764 9.6135 -1.4331 20 1 -0.4747 9.6398 -1.8360 21 6 -2.4068 10.5696 -1.8214 22 7 -3.6255 10.5379 -1.3308 23 14 -1.9253 11.9001 -3.0410 24 1 -1.5026 11.2715 -4.3182 25 1 -3.0884 12.7898 -3.2878 26 1 -0.8021 12.6973 -2.4860 27 6 -0.4273 4.8462 2.1898 28 6 0.8533 4.0759 2.5283 29 1 -0.3633 0.4339 0.9316 30 1 -0.3634 0.5898 -0.8415 31 1 -0.3634 -1.0237 -0.0899 32 1 1.8933 -0.5138 -0.8900 33 1 1.8933 -0.5138 0.8900 34 1 3.9352 2.4655 -0.0462 35 1 3.9994 0.8296 0.6524 36 1 3.5095 -0.1099 -1.6256 37 1 3.7294 1.4039 -3.5774 38 1 2.3649 1.8896 -2.5424 39 1 3.8961 2.7949 -2.4798 40 1 5.8390 0.0991 -0.8019 41 1 5.7579 0.3585 -2.5611 42 1 5.9249 1.7493 -1.4633 43 1 2.3198 4.9567 0.2376 44 1 1.7162 3.6069 -0.7596 45 1 -0.5970 4.3068 -0.3925 46 1 0.3315 5.7100 -0.9746 47 1 -2.1404 6.0504 0.4144 48 1 -1.6263 7.0970 1.7593 49 1 -2.7294 8.6132 -0.1762 50 1 -4.2749 11.2055 -1.6016 51 1 -1.2124 4.1428 1.9125 52 1 -0.7453 5.4230 3.0583 53 1 0.6369 3.3192 3.2826 54 1 1.6077 4.7669 2.9048 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001113509029.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:49:53 Heat of formation + Delta-G solvation = -102.301974 kcal Electronic energy + Delta-G solvation = -31076.854130 eV Core-core repulsion = 27047.174387 eV Total energy + Delta-G solvation = -4029.679743 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 339.231 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -41.63424 -40.37325 -38.88292 -37.89664 -36.05164 -35.39319 -34.61511 -33.25019 -32.27964 -30.63812 -29.86492 -27.98662 -27.41534 -25.87236 -25.14413 -24.70248 -23.55813 -21.86878 -21.04865 -20.48720 -19.88430 -19.64984 -18.55828 -17.79032 -16.99250 -16.66586 -16.60504 -16.37609 -16.15481 -15.89714 -15.62652 -15.41602 -15.31583 -15.19099 -14.85614 -14.66088 -14.45609 -14.08376 -14.04532 -13.66931 -13.51206 -13.41610 -13.22118 -13.00051 -12.96546 -12.79079 -12.63677 -12.54004 -12.41631 -12.31939 -12.19312 -12.14713 -12.13088 -12.09463 -11.76408 -11.70137 -11.41944 -11.37153 -11.25985 -10.59545 -10.32575 -9.98542 -9.76701 -9.22830 -8.44211 -5.92539 1.41159 1.43372 1.53718 1.57728 1.91996 2.07811 2.29598 2.71478 3.22916 3.36335 3.39614 3.68915 3.83151 3.87466 3.96729 4.10219 4.12535 4.12782 4.16284 4.24980 4.26718 4.35833 4.41230 4.47053 4.50026 4.55352 4.59954 4.69489 4.71057 4.73202 4.78521 4.83124 4.86655 4.91204 4.94752 5.02549 5.07122 5.09596 5.12521 5.15856 5.26555 5.32545 5.35723 5.42739 5.44019 5.50019 5.57149 5.81770 6.04679 6.12885 6.38644 6.62768 7.12471 7.15334 7.59265 8.14240 8.72971 Molecular weight = 339.23amu Principal moments of inertia in cm(-1) A = 0.014487 B = 0.002475 C = 0.002257 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1932.298379 B =11309.599494 C =12400.427593 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.105 4.105 3 C -0.107 4.107 4 H 0.105 0.895 5 C -0.099 4.099 6 C -0.091 4.091 7 C -0.155 4.155 8 C -0.148 4.148 9 C 0.520 3.480 10 O -0.580 6.580 11 N -0.612 5.612 12 C 0.122 3.878 13 C 0.042 3.958 14 N -0.530 5.530 15 C 0.058 3.942 16 C 0.444 3.556 17 O -0.610 6.610 18 N -0.575 5.575 19 C -0.329 4.329 20 H 0.081 0.919 21 C -0.014 4.014 22 N -0.922 5.922 23 Si 0.991 3.009 24 H -0.270 1.270 25 H -0.273 1.273 26 H -0.273 1.273 27 C 0.048 3.952 28 C 0.118 3.882 29 H 0.030 0.970 30 H 0.059 0.941 31 H 0.068 0.932 32 H 0.095 0.905 33 H 0.059 0.941 34 H 0.062 0.938 35 H 0.062 0.938 36 H 0.083 0.917 37 H 0.062 0.938 38 H 0.058 0.942 39 H 0.052 0.948 40 H 0.055 0.945 41 H 0.063 0.937 42 H 0.051 0.949 43 H 0.072 0.928 44 H 0.111 0.889 45 H 0.035 0.965 46 H 0.084 0.916 47 H 0.065 0.935 48 H 0.111 0.889 49 H 0.395 0.605 50 H 0.277 0.723 51 H 0.039 0.961 52 H 0.104 0.896 53 H 0.092 0.908 54 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.133 -20.315 1.279 22.310 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.143 4.143 3 C -0.128 4.128 4 H 0.123 0.877 5 C -0.137 4.137 6 C -0.109 4.109 7 C -0.212 4.212 8 C -0.205 4.205 9 C 0.310 3.690 10 O -0.460 6.460 11 N -0.345 5.345 12 C -0.001 4.001 13 C -0.087 4.087 14 N -0.255 5.255 15 C -0.073 4.073 16 C 0.231 3.769 17 O -0.496 6.496 18 N -0.212 5.212 19 C -0.459 4.459 20 H 0.099 0.901 21 C -0.213 4.213 22 N -0.563 5.563 23 Si 0.815 3.185 24 H -0.196 1.196 25 H -0.198 1.198 26 H -0.198 1.198 27 C -0.081 4.081 28 C -0.005 4.005 29 H 0.050 0.950 30 H 0.078 0.922 31 H 0.087 0.913 32 H 0.114 0.886 33 H 0.078 0.922 34 H 0.081 0.919 35 H 0.081 0.919 36 H 0.102 0.898 37 H 0.081 0.919 38 H 0.077 0.923 39 H 0.071 0.929 40 H 0.074 0.926 41 H 0.082 0.918 42 H 0.070 0.930 43 H 0.090 0.910 44 H 0.128 0.872 45 H 0.053 0.947 46 H 0.102 0.898 47 H 0.083 0.917 48 H 0.129 0.871 49 H 0.229 0.771 50 H 0.086 0.914 51 H 0.057 0.943 52 H 0.122 0.878 53 H 0.110 0.890 54 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges 10.085 -20.206 1.623 22.641 hybrid contribution -1.241 0.667 -0.342 1.450 sum 8.844 -19.539 1.281 21.485 Atomic orbital electron populations 1.21789 0.95951 1.02432 1.00852 1.21472 0.95788 0.93746 1.03246 1.21586 0.98672 0.98028 0.94497 0.87686 1.21544 0.91722 1.01800 0.98591 1.21137 0.96540 0.99986 0.93271 1.21965 1.01283 0.99512 0.98473 1.21835 0.94772 1.01776 1.02119 1.21160 0.75334 0.80971 0.91492 1.90634 1.54745 1.64529 1.36080 1.48355 1.64907 1.08643 1.12592 1.21898 0.97265 0.93630 0.87297 1.22537 0.96625 0.96011 0.93510 1.61480 1.36649 1.20959 1.06461 1.21726 0.92300 0.93717 0.99551 1.20657 0.85573 0.84918 0.85738 1.90455 1.22137 1.76763 1.60199 1.41942 1.13307 1.25721 1.40275 1.19619 0.98733 1.06532 1.21006 0.90063 1.26013 0.94846 1.00482 0.99998 1.69667 1.04385 1.37252 1.45033 0.85017 0.77764 0.77550 0.78206 1.19553 1.19792 1.19783 1.22524 0.96394 0.94402 0.94743 1.21671 0.95562 0.96156 0.87075 0.95041 0.92183 0.91331 0.88650 0.92203 0.91913 0.91894 0.89849 0.91854 0.92296 0.92859 0.92623 0.91808 0.93023 0.90971 0.87152 0.94702 0.89792 0.91712 0.87071 0.77133 0.91407 0.94326 0.87767 0.88969 0.90839 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.71 9.65 71.98 0.69 -2.02 16 2 C -0.10 -1.77 5.03 30.59 0.15 -1.61 16 3 C -0.11 -1.94 1.38 -11.54 -0.02 -1.96 16 4 H 0.11 1.70 4.16 -2.38 -0.01 1.69 16 5 C -0.10 -1.59 4.13 30.60 0.13 -1.46 16 6 C -0.09 -1.13 2.79 -10.79 -0.03 -1.16 16 7 C -0.16 -1.95 8.95 71.98 0.64 -1.30 16 8 C -0.15 -1.75 9.19 71.98 0.66 -1.09 16 9 C 0.52 12.97 5.86 87.66 0.51 13.49 16 10 O -0.58 -18.18 15.39 -3.04 -0.05 -18.22 16 11 N -0.61 -15.04 3.01 -817.92 -2.46 -17.50 16 12 C 0.12 2.93 6.49 86.35 0.56 3.49 16 13 C 0.04 1.23 5.26 86.38 0.45 1.68 16 14 N -0.53 -16.20 4.37 -899.82 -3.93 -20.13 16 15 C 0.06 1.91 5.45 85.55 0.47 2.38 16 16 C 0.44 20.09 7.44 87.66 0.65 20.75 16 17 O -0.61 -31.56 13.91 -3.06 -0.04 -31.60 16 18 N -0.58 -28.56 5.29 -306.99 -1.62 -30.19 16 19 C -0.33 -18.17 9.68 84.04 0.81 -17.35 16 20 H 0.08 4.74 7.16 -2.91 -0.02 4.72 16 21 C -0.01 -0.72 5.50 84.92 0.47 -0.26 16 22 N -0.92 -49.12 13.05 21.66 0.28 -48.83 16 23 Si 0.99 42.12 29.55 68.60 2.03 44.14 16 24 H -0.27 -11.28 7.11 99.48 0.71 -10.57 16 25 H -0.27 -11.03 7.11 99.48 0.71 -10.33 16 26 H -0.27 -11.48 7.11 99.48 0.71 -10.77 16 27 C 0.05 1.14 5.62 86.38 0.49 1.63 16 28 C 0.12 2.87 6.58 86.35 0.57 3.44 16 29 H 0.03 0.70 7.37 -2.39 -0.02 0.68 16 30 H 0.06 0.97 8.14 -2.39 -0.02 0.95 16 31 H 0.07 1.03 8.14 -2.39 -0.02 1.01 16 32 H 0.10 1.17 6.23 -2.39 -0.01 1.15 16 33 H 0.06 1.21 7.66 -2.39 -0.02 1.19 16 34 H 0.06 1.08 8.14 -2.39 -0.02 1.06 16 35 H 0.06 1.12 8.14 -2.39 -0.02 1.10 16 36 H 0.08 0.91 6.24 -2.39 -0.01 0.90 16 37 H 0.06 0.71 8.14 -2.39 -0.02 0.69 16 38 H 0.06 0.72 6.46 -2.39 -0.02 0.71 16 39 H 0.05 0.73 8.14 -2.39 -0.02 0.71 16 40 H 0.05 0.64 8.14 -2.39 -0.02 0.62 16 41 H 0.06 0.65 8.14 -2.39 -0.02 0.64 16 42 H 0.05 0.66 8.14 -2.39 -0.02 0.64 16 43 H 0.07 1.90 8.14 -2.39 -0.02 1.88 16 44 H 0.11 2.10 5.38 -2.39 -0.01 2.08 16 45 H 0.03 0.96 8.14 -2.39 -0.02 0.94 16 46 H 0.08 3.06 5.77 -2.39 -0.01 3.04 16 47 H 0.06 1.94 8.12 -2.39 -0.02 1.92 16 48 H 0.11 3.22 7.97 -2.39 -0.02 3.20 16 49 H 0.40 18.78 7.90 -92.71 -0.73 18.04 16 50 H 0.28 13.87 8.31 -92.71 -0.77 13.10 16 51 H 0.04 0.91 8.14 -2.39 -0.02 0.89 16 52 H 0.10 2.14 7.99 -2.39 -0.02 2.12 16 53 H 0.09 2.26 7.10 -2.38 -0.02 2.24 16 54 H 0.07 1.80 8.14 -2.38 -0.02 1.78 16 Total: -1.00 -67.22 414.57 1.57 -65.64 By element: Atomic # 1 Polarization: 37.90 SS G_CDS: 0.15 Total: 38.05 kcal Atomic # 6 Polarization: 11.42 SS G_CDS: 7.22 Total: 18.63 kcal Atomic # 7 Polarization: -108.91 SS G_CDS: -7.73 Total: -116.65 kcal Atomic # 8 Polarization: -49.73 SS G_CDS: -0.09 Total: -49.82 kcal Atomic # 14 Polarization: 42.12 SS G_CDS: 2.03 Total: 44.14 kcal Total: -67.22 1.57 -65.64 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001113509029.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -36.658 kcal (2) G-P(sol) polarization free energy of solvation -67.215 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -103.873 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.571 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.644 kcal (6) G-S(sol) free energy of system = (1) + (5) -102.302 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds