Wall clock time and date at job start Sat Apr 11 2020 05:49:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53005 * 109.46916 * 2 1 4 4 C 1.50703 * 109.47483 * 119.99918 * 2 1 3 5 5 O 1.21287 * 119.99801 * 339.22016 * 4 2 1 6 6 N 1.34773 * 120.00064 * 159.22445 * 4 2 1 7 7 C 1.46501 * 119.99612 * 186.20405 * 6 4 2 8 8 C 1.46497 * 119.99979 * 6.20659 * 6 4 2 9 9 C 1.50704 * 109.47210 * 96.65444 * 8 6 4 10 10 O 1.21282 * 119.99657 * 0.02562 * 9 8 6 11 11 N 1.34778 * 120.00283 * 179.97438 * 9 8 6 12 12 C 1.46494 * 120.00148 * 180.02562 * 11 9 8 13 13 C 1.52999 * 109.47337 * 181.24294 * 12 11 9 14 14 N 1.46500 * 109.46740 * 56.79974 * 13 12 11 15 15 C 1.36930 * 120.00291 * 61.07192 * 14 13 12 16 16 H 1.07999 * 119.99871 * 354.22871 * 15 14 13 17 17 C 1.38815 * 120.00427 * 174.23432 * 15 14 13 18 18 N 1.31619 * 119.99829 * 359.97438 * 17 15 14 19 19 Si 1.86800 * 120.00097 * 179.97438 * 17 15 14 20 20 H 1.48501 * 109.47080 * 59.99841 * 19 17 15 21 21 H 1.48499 * 109.46975 * 179.97438 * 19 17 15 22 22 H 1.48500 * 109.47345 * 299.99655 * 19 17 15 23 23 C 1.52995 * 109.47332 * 176.79877 * 13 12 11 24 24 C 1.52997 * 109.47058 * 180.02562 * 23 13 12 25 25 C 1.53001 * 109.47102 * 300.00050 * 24 23 13 26 26 C 1.52995 * 109.47205 * 60.00040 * 25 24 23 27 27 C 1.52997 * 109.47058 * 299.99987 * 26 25 24 28 28 H 1.09001 * 109.47125 * 299.99813 * 1 2 3 29 29 H 1.08993 * 109.47475 * 59.99961 * 1 2 3 30 30 H 1.09003 * 109.46757 * 180.02562 * 1 2 3 31 31 H 1.09001 * 109.47125 * 240.00187 * 2 1 3 32 32 H 1.09002 * 109.47165 * 51.68183 * 3 2 1 33 33 H 1.09002 * 109.46829 * 171.68239 * 3 2 1 34 34 H 1.09002 * 109.46757 * 291.68237 * 3 2 1 35 35 H 1.08997 * 109.47111 * 273.62550 * 7 6 4 36 36 H 1.08995 * 109.47021 * 33.63339 * 7 6 4 37 37 H 1.09004 * 109.46650 * 153.62940 * 7 6 4 38 38 H 1.08994 * 109.47310 * 336.65925 * 8 6 4 39 39 H 1.08998 * 109.47134 * 216.65296 * 8 6 4 40 40 H 0.97003 * 119.99222 * 0.02562 * 11 9 8 41 41 H 1.09007 * 109.46705 * 61.24570 * 12 11 9 42 42 H 1.09000 * 109.47163 * 301.24538 * 12 11 9 43 43 H 0.97011 * 120.00097 * 241.34562 * 14 13 12 44 44 H 0.97003 * 119.99785 * 180.02562 * 18 17 15 45 45 H 1.09000 * 109.46996 * 300.00203 * 23 13 12 46 46 H 1.09000 * 109.46920 * 60.00433 * 23 13 12 47 47 H 1.08997 * 109.47317 * 180.02562 * 24 23 13 48 48 H 1.08998 * 109.47260 * 59.99765 * 24 23 13 49 49 H 1.09000 * 109.47332 * 300.00108 * 25 24 23 50 50 H 1.09003 * 109.47140 * 180.02562 * 25 24 23 51 51 H 1.08997 * 109.47460 * 179.97438 * 26 25 24 52 52 H 1.08998 * 109.47277 * 60.00211 * 26 25 24 53 53 H 1.09000 * 109.47115 * 299.99709 * 27 26 25 54 54 H 1.09010 * 109.47059 * 179.97438 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0324 -0.7104 1.2305 5 8 1.3087 -0.8372 2.1955 6 7 3.2859 -1.2047 1.2586 7 6 3.7295 -2.0119 2.3978 8 6 4.2048 -0.9347 0.1500 9 6 5.0831 0.2389 0.5000 10 8 4.9544 0.7947 1.5703 11 7 6.0122 0.6702 -0.3759 12 6 6.8664 1.8106 -0.0355 13 6 7.8053 2.1118 -1.2054 14 7 7.0155 2.3574 -2.4146 15 6 6.1259 3.3977 -2.4518 16 1 5.9378 3.9795 -1.5615 17 6 5.4659 3.7047 -3.6338 18 7 5.6955 2.9960 -4.7189 19 14 4.2518 5.1235 -3.6843 20 1 4.9489 6.3845 -3.3248 21 1 3.6873 5.2433 -5.0526 22 1 3.1546 4.8709 -2.7160 23 6 8.6416 3.3515 -0.8820 24 6 9.5801 3.6530 -2.0522 25 6 10.5074 2.4581 -2.2832 26 6 9.6710 1.2185 -2.6065 27 6 8.7326 0.9170 -1.4364 28 1 -0.3633 0.5138 0.8900 29 1 -0.3634 0.5138 -0.8899 30 1 -0.3633 -1.0277 0.0005 31 1 1.8933 -0.5138 -0.8900 32 1 1.5603 1.9975 0.8063 33 1 3.1198 1.4461 0.1487 34 1 1.8031 1.9116 -0.9550 35 1 4.1052 -1.3563 3.1833 36 1 2.8904 -2.5931 2.7800 37 1 4.5232 -2.6870 2.0776 38 1 3.6324 -0.7048 -0.7486 39 1 4.8257 -1.8124 -0.0292 40 1 6.1153 0.2253 -1.2318 41 1 7.4548 1.5721 0.8505 42 1 6.2446 2.6831 0.1653 43 1 7.1198 1.7806 -3.1875 44 1 5.2345 3.2107 -5.5449 45 1 7.9810 4.2028 -0.7178 46 1 9.2293 3.1687 0.0177 47 1 10.1762 4.5358 -1.8216 48 1 8.9922 3.8358 -2.9516 49 1 11.0953 2.2752 -1.3837 50 1 11.1763 2.6731 -3.1166 51 1 10.3316 0.3674 -2.7716 52 1 9.0831 1.4013 -3.5060 53 1 9.3205 0.7341 -0.5370 54 1 8.1364 0.0340 -1.6670 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001115560203.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:49:56 Heat of formation + Delta-G solvation = -95.591506 kcal Electronic energy + Delta-G solvation = -32243.310817 eV Core-core repulsion = 28213.922062 eV Total energy + Delta-G solvation = -4029.388755 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 339.231 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -41.59343 -40.63256 -39.63773 -36.52983 -35.78148 -35.53491 -35.01026 -32.83390 -31.52308 -30.56282 -29.55809 -28.26027 -27.87013 -26.21496 -25.63319 -23.65170 -23.41317 -21.98744 -21.45838 -19.99860 -19.67771 -18.97178 -18.53023 -18.18944 -17.46601 -16.79120 -16.48133 -16.29326 -16.12691 -15.83682 -15.52698 -15.22427 -15.10003 -14.89267 -14.80656 -14.39847 -14.28927 -13.98126 -13.75472 -13.54962 -13.36998 -13.29419 -13.22319 -13.12998 -12.93874 -12.87696 -12.83975 -12.77741 -12.57149 -12.48426 -12.13798 -12.04199 -11.99566 -11.84517 -11.64727 -11.27721 -11.19440 -11.03540 -10.82177 -10.69753 -10.65972 -9.85736 -9.74811 -8.84764 -7.83398 -5.06434 1.40585 1.46668 1.50513 1.53077 1.70900 1.89639 2.49625 2.62466 3.38410 3.49684 3.79919 3.86011 3.88226 3.96455 3.98108 4.00963 4.07144 4.17871 4.26394 4.34516 4.43688 4.49073 4.52608 4.62148 4.64651 4.70325 4.71374 4.80014 4.80955 4.85408 4.85579 4.89018 4.94660 4.98130 5.00335 5.12421 5.16855 5.21604 5.23058 5.25958 5.38595 5.50010 5.53366 5.54843 5.61851 5.66015 5.73308 5.83739 6.17202 6.39876 6.72457 7.04109 7.37885 7.49720 8.22281 8.49436 9.38485 Molecular weight = 339.23amu Principal moments of inertia in cm(-1) A = 0.010414 B = 0.004167 C = 0.003234 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2688.143776 B = 6717.485214 C = 8654.689800 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C -0.112 4.112 3 C -0.141 4.141 4 C 0.518 3.482 5 O -0.578 6.578 6 N -0.597 5.597 7 C 0.088 3.912 8 C 0.087 3.913 9 C 0.487 3.513 10 O -0.584 6.584 11 N -0.692 5.692 12 C 0.126 3.874 13 C 0.190 3.810 14 N -0.706 5.706 15 C -0.203 4.203 16 H 0.056 0.944 17 C -0.055 4.055 18 N -0.956 5.956 19 Si 0.936 3.064 20 H -0.293 1.293 21 H -0.299 1.299 22 H -0.287 1.287 23 C -0.115 4.115 24 C -0.106 4.106 25 C -0.108 4.108 26 C -0.112 4.112 27 C -0.106 4.106 28 H 0.046 0.954 29 H 0.081 0.919 30 H 0.064 0.936 31 H 0.121 0.879 32 H 0.046 0.954 33 H 0.047 0.953 34 H 0.076 0.924 35 H 0.036 0.964 36 H 0.069 0.931 37 H 0.106 0.894 38 H 0.129 0.871 39 H 0.152 0.848 40 H 0.410 0.590 41 H 0.062 0.938 42 H 0.028 0.972 43 H 0.379 0.621 44 H 0.246 0.754 45 H 0.034 0.966 46 H 0.069 0.931 47 H 0.052 0.948 48 H 0.041 0.959 49 H 0.072 0.928 50 H 0.057 0.943 51 H 0.075 0.925 52 H 0.045 0.955 53 H 0.081 0.919 54 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.977 -12.072 5.382 13.803 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C -0.133 4.133 3 C -0.198 4.198 4 C 0.307 3.693 5 O -0.457 6.457 6 N -0.328 5.328 7 C -0.054 4.054 8 C -0.040 4.040 9 C 0.273 3.727 10 O -0.465 6.465 11 N -0.343 5.343 12 C -0.001 4.001 13 C 0.100 3.900 14 N -0.347 5.347 15 C -0.335 4.335 16 H 0.074 0.926 17 C -0.248 4.248 18 N -0.607 5.607 19 Si 0.768 3.232 20 H -0.220 1.220 21 H -0.226 1.226 22 H -0.214 1.214 23 C -0.155 4.155 24 C -0.144 4.144 25 C -0.146 4.146 26 C -0.150 4.150 27 C -0.144 4.144 28 H 0.065 0.935 29 H 0.099 0.901 30 H 0.083 0.917 31 H 0.139 0.861 32 H 0.065 0.935 33 H 0.066 0.934 34 H 0.094 0.906 35 H 0.054 0.946 36 H 0.088 0.912 37 H 0.124 0.876 38 H 0.147 0.853 39 H 0.170 0.830 40 H 0.247 0.753 41 H 0.080 0.920 42 H 0.046 0.954 43 H 0.213 0.787 44 H 0.055 0.945 45 H 0.053 0.947 46 H 0.088 0.912 47 H 0.071 0.929 48 H 0.060 0.940 49 H 0.091 0.909 50 H 0.076 0.924 51 H 0.094 0.906 52 H 0.064 0.936 53 H 0.100 0.900 54 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges 3.435 -11.611 6.683 13.831 hybrid contribution -0.820 1.355 -0.715 1.738 sum 2.615 -10.256 5.968 12.151 Atomic orbital electron populations 1.21618 0.91760 1.02796 1.02505 1.21397 0.98970 0.96628 0.96324 1.21756 1.00875 0.94530 1.02687 1.21157 0.81244 0.77314 0.89561 1.90630 1.57742 1.59085 1.38290 1.47492 1.11412 1.51757 1.22116 1.21717 1.01092 0.94434 0.88124 1.21833 0.93255 0.98131 0.90748 1.21616 0.80936 0.86039 0.84147 1.90701 1.70373 1.59729 1.25715 1.45705 1.35778 1.32774 1.20071 1.21653 0.92644 0.87761 0.98050 1.20000 0.89545 0.94421 0.86071 1.42424 1.45182 1.34041 1.13014 1.19059 1.14017 1.06652 0.93786 0.92593 1.25009 1.02764 1.01005 0.96023 1.69714 1.47475 1.43034 1.00466 0.85791 0.80280 0.81320 0.75784 1.21990 1.22576 1.21437 1.21790 0.97611 0.98087 0.97992 1.21297 0.96895 0.97800 0.98402 1.21453 0.97158 0.94610 1.01366 1.21434 0.97770 0.97822 0.97983 1.21658 0.97042 0.96347 0.99342 0.93460 0.90052 0.91668 0.86081 0.93517 0.93363 0.90554 0.94563 0.91220 0.87596 0.85287 0.83040 0.75304 0.92022 0.95400 0.78678 0.94473 0.94741 0.91236 0.92920 0.94011 0.90949 0.92439 0.90617 0.93639 0.90017 0.91151 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.00 8.66 71.98 0.62 -2.38 16 2 C -0.11 -2.83 2.41 -11.54 -0.03 -2.86 16 3 C -0.14 -4.23 9.02 71.98 0.65 -3.58 16 4 C 0.52 15.46 6.81 87.66 0.60 16.06 16 5 O -0.58 -21.32 15.75 -3.05 -0.05 -21.37 16 6 N -0.60 -14.88 2.38 -851.14 -2.03 -16.91 16 7 C 0.09 1.94 10.30 127.77 1.32 3.25 16 8 C 0.09 1.73 5.48 85.63 0.47 2.20 16 9 C 0.49 13.94 6.04 87.66 0.53 14.47 16 10 O -0.58 -22.16 15.86 -3.04 -0.05 -22.21 16 11 N -0.69 -19.27 5.13 -463.06 -2.37 -21.64 16 12 C 0.13 4.03 4.38 86.38 0.38 4.41 16 13 C 0.19 5.93 0.40 3.60 0.00 5.93 16 14 N -0.71 -28.03 3.59 -303.35 -1.09 -29.12 16 15 C -0.20 -9.73 8.68 84.04 0.73 -9.00 16 16 H 0.06 2.81 6.74 -2.91 -0.02 2.79 16 17 C -0.05 -2.84 5.50 84.86 0.47 -2.38 16 18 N -0.96 -51.96 13.07 21.65 0.28 -51.68 16 19 Si 0.94 44.08 29.55 68.60 2.03 46.11 16 20 H -0.29 -13.86 7.11 99.48 0.71 -13.15 16 21 H -0.30 -14.35 7.11 99.48 0.71 -13.65 16 22 H -0.29 -13.41 7.11 99.48 0.71 -12.70 16 23 C -0.11 -3.64 4.55 30.59 0.14 -3.50 16 24 C -0.11 -3.31 5.77 30.59 0.18 -3.14 16 25 C -0.11 -2.69 5.92 30.59 0.18 -2.51 16 26 C -0.11 -2.79 5.75 30.59 0.18 -2.61 16 27 C -0.11 -2.54 4.63 30.59 0.14 -2.39 16 28 H 0.05 1.26 7.89 -2.39 -0.02 1.24 16 29 H 0.08 1.58 8.14 -2.39 -0.02 1.56 16 30 H 0.06 1.39 8.14 -2.39 -0.02 1.37 16 31 H 0.12 2.34 6.51 -2.39 -0.02 2.32 16 32 H 0.05 1.49 8.13 -2.39 -0.02 1.47 16 33 H 0.05 1.63 4.90 -2.39 -0.01 1.62 16 34 H 0.08 2.19 8.14 -2.39 -0.02 2.17 16 35 H 0.04 0.96 8.14 -2.39 -0.02 0.94 16 36 H 0.07 1.56 7.63 -2.39 -0.02 1.54 16 37 H 0.11 1.47 7.92 -2.39 -0.02 1.46 16 38 H 0.13 2.26 5.62 -2.39 -0.01 2.24 16 39 H 0.15 1.68 7.97 -2.39 -0.02 1.66 16 40 H 0.41 10.15 7.24 -92.71 -0.67 9.48 16 41 H 0.06 1.85 8.14 -2.38 -0.02 1.83 16 42 H 0.03 1.11 7.33 -2.39 -0.02 1.09 16 43 H 0.38 16.21 6.58 -92.70 -0.61 15.60 16 44 H 0.25 13.45 8.31 -92.71 -0.77 12.67 16 45 H 0.03 1.27 7.33 -2.39 -0.02 1.25 16 46 H 0.07 1.85 8.14 -2.39 -0.02 1.83 16 47 H 0.05 1.52 8.14 -2.39 -0.02 1.50 16 48 H 0.04 1.65 7.60 -2.39 -0.02 1.63 16 49 H 0.07 1.51 8.14 -2.39 -0.02 1.49 16 50 H 0.06 1.37 8.14 -2.39 -0.02 1.35 16 51 H 0.08 1.51 8.14 -2.39 -0.02 1.49 16 52 H 0.04 1.41 6.89 -2.39 -0.02 1.40 16 53 H 0.08 1.66 8.14 -2.39 -0.02 1.64 16 54 H 0.07 1.52 7.04 -2.38 -0.02 1.51 16 Total: -1.00 -69.07 412.16 2.88 -66.18 By element: Atomic # 1 Polarization: 39.04 SS G_CDS: -0.39 Total: 38.65 kcal Atomic # 6 Polarization: 5.43 SS G_CDS: 6.55 Total: 11.98 kcal Atomic # 7 Polarization: -114.14 SS G_CDS: -5.21 Total: -119.35 kcal Atomic # 8 Polarization: -43.48 SS G_CDS: -0.10 Total: -43.58 kcal Atomic # 14 Polarization: 44.08 SS G_CDS: 2.03 Total: 46.11 kcal Total: -69.07 2.88 -66.18 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001115560203.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -29.408 kcal (2) G-P(sol) polarization free energy of solvation -69.069 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -98.476 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.885 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.184 kcal (6) G-S(sol) free energy of system = (1) + (5) -95.592 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds