Wall clock time and date at job start Sat Apr 11 2020 05:50:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46903 * 1 3 3 C 1.46897 * 110.99938 * 2 1 4 4 C 1.46901 * 110.99860 * 123.95076 * 2 1 3 5 5 H 1.09002 * 109.46950 * 187.28847 * 4 2 1 6 6 C 1.52998 * 109.47425 * 307.28501 * 4 2 1 7 7 C 1.52998 * 109.47522 * 180.02562 * 6 4 2 8 8 C 1.52999 * 109.46913 * 300.00182 * 7 6 4 9 9 C 1.52999 * 109.47354 * 60.00132 * 8 7 6 10 10 C 1.52996 * 109.47296 * 67.29017 * 4 2 1 11 11 H 1.09002 * 109.46982 * 299.99810 * 10 4 2 12 12 N 1.46495 * 109.47394 * 59.99630 * 10 4 2 13 13 C 1.34780 * 120.00489 * 205.00115 * 12 10 4 14 14 O 1.21358 * 119.99495 * 0.02562 * 13 12 10 15 15 C 1.49447 * 120.00497 * 180.02562 * 13 12 10 16 16 O 1.21347 * 119.99639 * 359.97438 * 15 13 12 17 17 N 1.34778 * 119.99951 * 180.02562 * 15 13 12 18 18 C 1.46498 * 119.99408 * 179.97438 * 17 15 13 19 19 C 1.53008 * 109.46819 * 179.97438 * 18 17 15 20 20 C 1.52995 * 109.47040 * 300.00166 * 19 18 17 21 21 C 1.52996 * 109.46986 * 59.99966 * 19 18 17 22 22 C 1.50697 * 109.47235 * 179.97438 * 19 18 17 23 23 H 1.08001 * 119.99738 * 0.02562 * 22 19 18 24 24 C 1.37875 * 119.99931 * 179.97438 * 22 19 18 25 25 N 1.31510 * 120.00014 * 0.02562 * 24 22 19 26 26 Si 1.86800 * 119.99899 * 179.97438 * 24 22 19 27 27 H 1.48502 * 109.47146 * 0.02562 * 26 24 22 28 28 H 1.48501 * 109.47124 * 120.00061 * 26 24 22 29 29 H 1.48494 * 109.47628 * 240.00347 * 26 24 22 30 30 H 1.09004 * 109.47065 * 296.04428 * 1 2 3 31 31 H 1.08992 * 109.47263 * 56.05074 * 1 2 3 32 32 H 1.09003 * 109.47090 * 176.05136 * 1 2 3 33 33 H 1.09000 * 109.47070 * 178.17372 * 3 2 1 34 34 H 1.09002 * 109.46553 * 298.17027 * 3 2 1 35 35 H 1.08994 * 109.47633 * 58.17072 * 3 2 1 36 36 H 1.09002 * 109.46774 * 60.00238 * 6 4 2 37 37 H 1.08998 * 109.47103 * 300.00463 * 6 4 2 38 38 H 1.09002 * 109.47014 * 60.00247 * 7 6 4 39 39 H 1.09000 * 109.47534 * 180.02562 * 7 6 4 40 40 H 1.09003 * 109.47263 * 179.97438 * 8 7 6 41 41 H 1.09002 * 109.47333 * 299.99869 * 8 7 6 42 42 H 1.09004 * 109.47728 * 179.97438 * 9 8 7 43 43 H 1.09002 * 109.47114 * 59.99604 * 9 8 7 44 44 H 0.96996 * 119.99923 * 25.00125 * 12 10 4 45 45 H 0.96996 * 120.00134 * 359.97438 * 17 15 13 46 46 H 1.08996 * 109.47320 * 299.99436 * 18 17 15 47 47 H 1.09001 * 109.47629 * 60.00305 * 18 17 15 48 48 H 1.09000 * 109.47478 * 59.99954 * 20 19 18 49 49 H 1.09006 * 109.47268 * 179.97438 * 20 19 18 50 50 H 1.08999 * 109.47347 * 299.99884 * 20 19 18 51 51 H 1.09006 * 109.47364 * 60.00094 * 21 19 18 52 52 H 1.09001 * 109.47203 * 179.97438 * 21 19 18 53 53 H 1.08999 * 109.47329 * 300.00321 * 21 19 18 54 54 H 0.97004 * 119.99942 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3714 0.0000 4 6 1.9954 -0.7659 1.1376 5 1 3.0773 -0.6432 1.1888 6 6 1.3624 -0.2547 2.4333 7 6 1.9112 -1.0520 3.6183 8 6 1.5745 -2.5333 3.4360 9 6 2.2075 -3.0446 2.1403 10 6 1.6583 -2.2471 0.9550 11 1 0.5764 -2.3698 0.9039 12 7 2.2644 -2.7366 -0.2856 13 6 1.7332 -3.7995 -0.9216 14 8 0.7525 -4.3508 -0.4667 15 6 2.3519 -4.2992 -2.1869 16 8 3.3323 -3.7476 -2.6419 17 7 1.8203 -5.3618 -2.8231 18 6 2.4265 -5.8512 -4.0637 19 6 1.6364 -7.0571 -4.5763 20 6 1.6607 -8.1674 -3.5241 21 6 0.1888 -6.6412 -4.8454 22 6 2.2595 -7.5602 -5.8528 23 1 3.1322 -7.0693 -6.2578 24 6 1.7163 -8.6478 -6.5032 25 7 0.6540 -9.2458 -6.0098 26 14 2.4883 -9.2710 -8.0859 27 1 3.6643 -8.4309 -8.4273 28 1 2.9228 -10.6793 -7.9036 29 1 1.4921 -9.1986 -9.1847 30 1 -0.3633 0.4512 0.9233 31 1 -0.3633 0.5739 -0.8524 32 1 -0.3633 -1.0253 -0.0708 33 1 3.0846 1.3425 0.0328 34 1 1.6727 1.8844 -0.9060 35 1 1.6197 1.9049 0.8731 36 1 0.2806 -0.3775 2.3822 37 1 1.6026 0.8005 2.5634 38 1 2.9930 -0.9289 3.6693 39 1 1.4599 -0.6881 4.5413 40 1 1.9658 -3.1015 4.2799 41 1 0.4926 -2.6564 3.3850 42 1 1.9681 -4.1000 2.0106 43 1 3.2894 -2.9215 2.1913 44 1 3.0481 -2.2957 -0.6493 45 1 1.0364 -5.8025 -2.4595 46 1 2.4095 -5.0600 -4.8132 47 1 3.4577 -6.1480 -3.8719 48 1 1.2097 -7.8033 -2.6010 49 1 1.0974 -9.0263 -3.8890 50 1 2.6920 -8.4637 -3.3323 51 1 0.1714 -5.8500 -5.5951 52 1 -0.3740 -7.5001 -5.2110 53 1 -0.2622 -6.2769 -3.9224 54 1 0.2716 -10.0108 -6.4675 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001118073226.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:50:08 Heat of formation + Delta-G solvation = -99.586754 kcal Electronic energy + Delta-G solvation = -31032.887928 eV Core-core repulsion = 27003.325925 eV Total energy + Delta-G solvation = -4029.562002 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 339.231 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -41.86613 -40.69312 -39.34925 -38.17546 -36.74864 -35.55767 -34.79230 -32.73310 -30.96996 -30.28142 -28.55455 -27.86717 -27.59026 -27.19654 -25.35941 -24.99511 -23.00371 -21.99754 -21.41884 -20.82180 -20.60423 -19.38312 -18.01314 -17.74619 -17.22550 -16.96930 -16.69801 -16.56068 -16.16864 -15.86818 -15.60627 -15.32926 -15.17032 -14.93772 -14.74161 -14.70209 -14.34545 -14.17961 -14.04146 -13.80496 -13.39519 -13.21611 -13.13624 -13.06413 -12.77705 -12.70876 -12.67428 -12.62075 -12.55497 -12.28074 -12.11996 -12.07944 -12.06196 -11.81113 -11.54647 -11.50916 -11.29411 -11.21428 -10.74653 -10.57793 -10.41229 -10.18643 -10.08387 -9.19469 -8.01402 -6.17854 0.41192 1.40604 1.43373 1.47905 1.57174 2.20855 2.45874 2.73197 2.95614 3.22475 3.50686 3.55735 3.83781 4.00268 4.07146 4.16697 4.24935 4.34752 4.35350 4.39743 4.44291 4.47537 4.49813 4.64387 4.65732 4.67841 4.84673 4.86122 4.92873 4.97381 5.03783 5.04232 5.06438 5.06733 5.11088 5.14022 5.17040 5.21694 5.23411 5.30436 5.34931 5.46789 5.48740 5.64542 5.67842 6.02354 6.05861 6.10893 6.11030 6.19009 6.41213 6.45573 6.80287 6.87690 7.02221 7.50162 8.98179 Molecular weight = 339.23amu Principal moments of inertia in cm(-1) A = 0.022796 B = 0.002244 C = 0.002162 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1227.987737 B =12475.551732 C =12946.466547 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.020 3.980 2 N -0.556 5.556 3 C 0.025 3.975 4 C 0.081 3.919 5 H 0.098 0.902 6 C -0.143 4.143 7 C -0.112 4.112 8 C -0.114 4.114 9 C -0.128 4.128 10 C 0.153 3.847 11 H 0.075 0.925 12 N -0.669 5.669 13 C 0.514 3.486 14 O -0.547 6.547 15 C 0.497 3.503 16 O -0.551 6.551 17 N -0.683 5.683 18 C 0.144 3.856 19 C 0.051 3.949 20 C -0.124 4.124 21 C -0.124 4.124 22 C -0.525 4.525 23 H 0.051 0.949 24 C 0.026 3.974 25 N -0.902 5.902 26 Si 0.949 3.051 27 H -0.272 1.272 28 H -0.283 1.283 29 H -0.283 1.283 30 H 0.046 0.954 31 H 0.067 0.933 32 H 0.051 0.949 33 H 0.074 0.926 34 H 0.067 0.933 35 H 0.039 0.961 36 H 0.066 0.934 37 H 0.080 0.920 38 H 0.073 0.927 39 H 0.077 0.923 40 H 0.077 0.923 41 H 0.059 0.941 42 H 0.051 0.949 43 H 0.077 0.923 44 H 0.417 0.583 45 H 0.412 0.588 46 H 0.053 0.947 47 H 0.054 0.946 48 H 0.029 0.971 49 H 0.064 0.936 50 H 0.024 0.976 51 H 0.023 0.977 52 H 0.064 0.936 53 H 0.028 0.972 54 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.187 20.293 20.562 28.914 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 N -0.278 5.278 3 C -0.123 4.123 4 C -0.028 4.028 5 H 0.116 0.884 6 C -0.182 4.182 7 C -0.150 4.150 8 C -0.152 4.152 9 C -0.168 4.168 10 C 0.049 3.951 11 H 0.093 0.907 12 N -0.320 5.320 13 C 0.295 3.705 14 O -0.425 6.425 15 C 0.277 3.723 16 O -0.430 6.430 17 N -0.334 5.334 18 C 0.021 3.979 19 C 0.050 3.950 20 C -0.182 4.182 21 C -0.182 4.182 22 C -0.563 4.563 23 H 0.069 0.931 24 C -0.174 4.174 25 N -0.540 5.540 26 Si 0.776 3.224 27 H -0.196 1.196 28 H -0.209 1.209 29 H -0.209 1.209 30 H 0.064 0.936 31 H 0.086 0.914 32 H 0.070 0.930 33 H 0.093 0.907 34 H 0.086 0.914 35 H 0.057 0.943 36 H 0.085 0.915 37 H 0.098 0.902 38 H 0.091 0.909 39 H 0.095 0.905 40 H 0.095 0.905 41 H 0.077 0.923 42 H 0.069 0.931 43 H 0.096 0.904 44 H 0.254 0.746 45 H 0.250 0.750 46 H 0.071 0.929 47 H 0.072 0.928 48 H 0.048 0.952 49 H 0.083 0.917 50 H 0.043 0.957 51 H 0.042 0.958 52 H 0.083 0.917 53 H 0.047 0.953 54 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges 1.223 19.928 20.049 28.294 hybrid contribution -0.094 -0.388 -0.588 0.711 sum 1.129 19.540 19.460 27.601 Atomic orbital electron populations 1.22427 0.87488 1.01582 1.01341 1.62137 1.08385 1.15100 1.42208 1.22414 1.00886 0.87705 1.01280 1.22012 1.00776 0.90646 0.89329 0.88351 1.22134 1.01043 1.00711 0.94333 1.21489 1.01789 0.93864 0.97839 1.21493 1.00639 0.96787 0.96254 1.21936 1.01448 0.99110 0.94260 1.21240 0.98249 0.93311 0.82275 0.90689 1.45607 1.32238 1.29153 1.24959 1.19951 0.83984 0.81961 0.84639 1.90734 1.26479 1.57969 1.67295 1.20415 0.84464 0.81593 0.85784 1.90705 1.26737 1.57890 1.67677 1.46060 1.32098 1.29858 1.25427 1.21534 0.96590 0.96638 0.83166 1.18373 0.92612 0.90065 0.93916 1.21706 0.99170 1.01219 0.96070 1.21708 0.98465 1.00178 0.97821 1.21270 1.13067 1.13938 1.08040 0.93064 1.25505 0.95332 0.96570 0.99994 1.69934 1.22250 1.21868 1.39993 0.85645 0.78514 0.78007 0.80260 1.19640 1.20857 1.20875 0.93562 0.91376 0.93038 0.90730 0.91430 0.94284 0.91535 0.90161 0.90859 0.90479 0.90468 0.92264 0.93065 0.90419 0.74581 0.75015 0.92896 0.92796 0.95234 0.91749 0.95724 0.95794 0.91735 0.95261 0.93049 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.31 8.76 127.69 1.12 1.43 16 2 N -0.56 -8.79 4.79 -923.29 -4.42 -13.22 16 3 C 0.02 0.29 9.30 127.69 1.19 1.48 16 4 C 0.08 1.12 1.70 44.91 0.08 1.19 16 5 H 0.10 1.20 7.96 -2.39 -0.02 1.18 16 6 C -0.14 -1.44 4.43 30.59 0.14 -1.31 16 7 C -0.11 -0.98 5.92 30.59 0.18 -0.80 16 8 C -0.11 -1.39 5.92 30.59 0.18 -1.21 16 9 C -0.13 -2.16 5.50 30.61 0.17 -1.99 16 10 C 0.15 2.91 1.74 45.01 0.08 2.99 16 11 H 0.08 1.72 6.03 -2.39 -0.01 1.71 16 12 N -0.67 -16.00 4.90 -443.78 -2.18 -18.18 16 13 C 0.51 16.02 7.86 87.27 0.69 16.70 16 14 O -0.55 -19.00 16.14 -3.27 -0.05 -19.05 16 15 C 0.50 17.84 7.89 87.27 0.69 18.53 16 16 O -0.55 -21.56 16.48 -3.24 -0.05 -21.62 16 17 N -0.68 -25.85 4.95 -464.41 -2.30 -28.15 16 18 C 0.14 6.14 4.50 86.38 0.39 6.53 16 19 C 0.05 2.41 0.50 -52.93 -0.03 2.38 16 20 C -0.12 -5.74 8.08 71.98 0.58 -5.16 16 21 C -0.12 -5.77 8.08 71.98 0.58 -5.19 16 22 C -0.52 -27.68 8.01 25.60 0.21 -27.47 16 23 H 0.05 2.72 7.74 -2.91 -0.02 2.69 16 24 C 0.03 1.35 5.15 84.65 0.44 1.79 16 25 N -0.90 -48.85 9.35 21.45 0.20 -48.65 16 26 Si 0.95 42.66 29.54 68.60 2.03 44.69 16 27 H -0.27 -12.07 7.11 99.48 0.71 -11.36 16 28 H -0.28 -12.54 7.11 99.48 0.71 -11.83 16 29 H -0.28 -12.56 7.11 99.48 0.71 -11.85 16 30 H 0.05 0.59 6.20 -2.39 -0.01 0.57 16 31 H 0.07 1.07 8.14 -2.39 -0.02 1.05 16 32 H 0.05 1.02 6.51 -2.39 -0.02 1.00 16 33 H 0.07 0.78 8.00 -2.39 -0.02 0.76 16 34 H 0.07 0.82 8.14 -2.39 -0.02 0.80 16 35 H 0.04 0.36 6.92 -2.39 -0.02 0.34 16 36 H 0.07 0.76 6.32 -2.39 -0.02 0.75 16 37 H 0.08 0.66 6.86 -2.39 -0.02 0.64 16 38 H 0.07 0.56 8.14 -2.39 -0.02 0.54 16 39 H 0.08 0.54 8.14 -2.39 -0.02 0.52 16 40 H 0.08 0.82 8.14 -2.39 -0.02 0.80 16 41 H 0.06 0.81 8.14 -2.39 -0.02 0.79 16 42 H 0.05 1.11 8.14 -2.39 -0.02 1.09 16 43 H 0.08 1.15 8.14 -2.39 -0.02 1.13 16 44 H 0.42 9.47 8.07 -92.71 -0.75 8.72 16 45 H 0.41 15.30 5.63 -92.71 -0.52 14.78 16 46 H 0.05 2.34 8.14 -2.39 -0.02 2.32 16 47 H 0.05 2.37 8.14 -2.39 -0.02 2.35 16 48 H 0.03 1.20 6.86 -2.39 -0.02 1.19 16 49 H 0.06 3.30 6.07 -2.38 -0.01 3.28 16 50 H 0.02 1.11 8.14 -2.39 -0.02 1.09 16 51 H 0.02 1.08 8.14 -2.38 -0.02 1.06 16 52 H 0.06 3.31 6.07 -2.39 -0.01 3.30 16 53 H 0.03 1.20 6.86 -2.39 -0.02 1.18 16 54 H 0.26 13.53 8.31 -92.71 -0.77 12.76 16 Total: -1.00 -60.46 408.95 -0.48 -60.94 By element: Atomic # 1 Polarization: 33.71 SS G_CDS: -0.37 Total: 33.34 kcal Atomic # 6 Polarization: 3.23 SS G_CDS: 6.67 Total: 9.90 kcal Atomic # 7 Polarization: -99.50 SS G_CDS: -8.70 Total: -108.19 kcal Atomic # 8 Polarization: -40.57 SS G_CDS: -0.11 Total: -40.67 kcal Atomic # 14 Polarization: 42.66 SS G_CDS: 2.03 Total: 44.69 kcal Total: -60.46 -0.48 -60.94 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001118073226.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -38.649 kcal (2) G-P(sol) polarization free energy of solvation -60.457 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -99.106 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.481 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.937 kcal (6) G-S(sol) free energy of system = (1) + (5) -99.587 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds