Wall clock time and date at job start Sat Apr 11 2020 05:50:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52998 * 109.46928 * 2 1 4 4 H 1.08999 * 109.47123 * 305.46072 * 3 2 1 5 5 C 1.53000 * 109.46869 * 185.46600 * 3 2 1 6 6 C 1.52998 * 109.47523 * 64.99656 * 5 3 2 7 7 C 1.53877 * 110.03555 * 184.99992 * 6 5 3 8 8 C 1.54262 * 106.63849 * 240.69075 * 7 6 5 9 9 C 1.54958 * 104.16359 * 336.44436 * 8 7 6 10 10 C 1.54268 * 110.03104 * 67.83058 * 6 5 3 11 11 C 1.50697 * 109.47252 * 65.46221 * 3 2 1 12 12 O 1.21278 * 120.00234 * 35.66623 * 11 3 2 13 13 N 1.34780 * 119.99796 * 215.66116 * 11 3 2 14 14 C 1.46497 * 119.99951 * 184.91606 * 13 11 3 15 15 C 1.52996 * 109.47271 * 180.02562 * 14 13 11 16 16 N 1.46902 * 109.47348 * 180.02562 * 15 14 13 17 17 C 1.46896 * 111.00097 * 180.02562 * 16 15 14 18 18 C 1.50699 * 109.47292 * 180.02562 * 17 16 15 19 19 O 1.21298 * 119.99823 * 0.02562 * 18 17 16 20 20 N 1.34771 * 120.00130 * 180.02562 * 18 17 16 21 21 C 1.37103 * 120.00123 * 180.02562 * 20 18 17 22 22 H 1.08006 * 120.00009 * 359.97438 * 21 20 18 23 23 C 1.38941 * 120.00311 * 179.97438 * 21 20 18 24 24 N 1.31412 * 120.00175 * 179.97438 * 23 21 20 25 25 Si 1.86808 * 119.99956 * 359.97438 * 23 21 20 26 26 H 1.48496 * 109.47077 * 90.00078 * 25 23 21 27 27 H 1.48504 * 109.46988 * 210.00207 * 25 23 21 28 28 H 1.48498 * 109.46758 * 329.99974 * 25 23 21 29 29 H 1.08998 * 109.47334 * 53.82509 * 1 2 3 30 30 H 1.09004 * 109.47546 * 173.81965 * 1 2 3 31 31 H 1.09003 * 109.47079 * 293.82233 * 1 2 3 32 32 H 1.08996 * 109.47011 * 239.99551 * 2 1 3 33 33 H 1.08995 * 109.46714 * 119.99704 * 2 1 3 34 34 H 1.09000 * 109.46982 * 304.99638 * 5 3 2 35 35 H 1.08997 * 109.47056 * 185.00048 * 5 3 2 36 36 H 1.09005 * 110.05775 * 306.41930 * 6 5 3 37 37 H 1.09000 * 110.02693 * 0.02562 * 7 6 5 38 38 H 1.09000 * 110.03201 * 121.38085 * 7 6 5 39 39 H 1.08996 * 110.48589 * 95.09811 * 8 7 6 40 40 H 1.08997 * 110.48157 * 217.73217 * 8 7 6 41 41 H 1.09003 * 110.71912 * 279.57593 * 9 8 7 42 42 H 1.09002 * 110.92251 * 156.29662 * 9 8 7 43 43 H 1.09001 * 110.49069 * 261.57462 * 10 6 5 44 44 H 1.08997 * 110.48607 * 24.09020 * 10 6 5 45 45 H 0.96999 * 120.00086 * 4.92693 * 13 11 3 46 46 H 1.08998 * 109.47735 * 300.00839 * 14 13 11 47 47 H 1.09004 * 109.46520 * 60.00497 * 14 13 11 48 48 H 1.09005 * 109.47466 * 300.00587 * 15 14 13 49 49 H 1.09004 * 109.47044 * 60.00694 * 15 14 13 50 50 H 1.00906 * 110.99576 * 56.04834 * 16 15 14 51 51 H 1.09001 * 109.47342 * 300.00218 * 17 16 15 52 52 H 1.09007 * 109.47039 * 60.00207 * 17 16 15 53 53 H 0.97001 * 120.00398 * 359.97438 * 20 18 17 54 54 H 0.97006 * 120.00252 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.5990 1.9838 -0.8370 5 6 3.5638 1.4447 -0.1374 6 6 3.9535 0.8775 -1.5039 7 6 5.4841 0.7572 -1.6077 8 6 5.9186 1.6530 -2.7860 9 6 4.6497 1.7603 -3.6688 10 6 3.5105 1.8429 -2.6226 11 6 1.6511 2.1128 1.2925 12 8 1.6403 1.4778 2.3256 13 7 1.3154 3.4181 1.3002 14 6 1.0420 4.0966 2.5695 15 6 0.6867 5.5600 2.2994 16 7 0.4132 6.2405 3.5722 17 6 0.0671 7.6509 3.3513 18 6 -0.2055 8.3148 4.6764 19 8 -0.1194 7.6759 5.7039 20 7 -0.5449 9.6183 4.7199 21 6 -0.7924 10.2224 5.9256 22 1 -0.7158 9.6535 6.8405 23 6 -1.1419 11.5664 5.9705 24 7 -1.3796 12.1453 7.1261 25 14 -1.2738 12.5506 4.3882 26 1 -2.6608 12.4633 3.8652 27 1 -0.9352 13.9710 4.6590 28 1 -0.3299 11.9999 3.3827 29 1 -0.3634 0.6066 -0.8295 30 1 -0.3634 -1.0217 -0.1106 31 1 -0.3633 0.4151 0.9401 32 1 1.8933 -0.5139 -0.8899 33 1 1.8933 -0.5138 0.8900 34 1 4.0004 0.8294 0.6493 35 1 3.9351 2.4655 -0.0484 36 1 3.4915 -0.0991 -1.6489 37 1 5.9491 1.1025 -0.6843 38 1 5.7649 -0.2779 -1.8021 39 1 6.2176 2.6376 -2.4266 40 1 6.7319 1.1853 -3.3409 41 1 4.5377 0.8734 -4.2926 42 1 4.6771 2.6611 -4.2820 43 1 2.5672 1.5142 -3.0589 44 1 3.4177 2.8579 -2.2361 45 1 1.2546 3.9082 0.4654 46 1 0.2072 3.6069 3.0709 47 1 1.9263 4.0483 3.2050 48 1 1.5213 6.0500 1.7978 49 1 -0.1977 5.6078 1.6640 50 1 1.1956 6.1544 4.2036 51 1 0.8969 8.1555 2.8565 52 1 -0.8221 7.7129 2.7237 53 1 -0.6134 10.1294 3.8983 54 1 -1.6232 13.0837 7.1575 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001134683416.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:50:20 Heat of formation + Delta-G solvation = -131.210462 kcal Electronic energy + Delta-G solvation = -28916.225652 eV Core-core repulsion = 24885.292343 eV Total energy + Delta-G solvation = -4030.933309 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 339.231 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -41.20088 -40.31323 -39.28414 -37.56420 -36.07438 -35.86526 -35.21411 -33.75214 -32.06378 -30.80609 -29.52736 -28.64601 -27.54000 -25.49545 -24.38694 -23.58431 -22.84388 -21.60630 -21.30229 -20.84965 -20.30002 -20.12137 -18.32173 -17.67534 -17.32290 -17.12927 -16.76472 -16.72698 -16.27523 -15.87314 -15.60674 -15.40625 -15.25849 -15.03334 -14.87688 -14.66053 -14.46717 -14.24848 -14.11711 -14.09798 -13.82098 -13.43287 -13.35853 -12.98969 -12.94963 -12.60920 -12.41375 -12.40534 -12.35783 -12.19522 -11.97261 -11.91011 -11.83589 -11.73409 -11.54699 -11.51534 -11.48806 -11.34239 -11.10592 -10.67101 -10.46035 -10.25400 -10.12786 -9.39010 -8.41288 -6.02956 1.30484 1.36926 1.45741 1.63746 1.95041 2.06002 2.23794 2.81965 3.14849 3.44123 3.63152 3.67866 3.77660 3.86287 3.93785 4.01228 4.09198 4.11666 4.17232 4.33559 4.44365 4.46071 4.46600 4.51265 4.58731 4.59100 4.64922 4.71615 4.74034 4.81649 4.87914 4.90058 4.94414 4.95156 5.03343 5.13997 5.14406 5.17138 5.23865 5.30408 5.33542 5.35467 5.41882 5.47977 5.52402 5.53670 5.62933 5.87320 6.00320 6.29118 6.56964 6.59468 6.87712 7.28415 7.39137 7.96321 8.76422 Molecular weight = 339.23amu Principal moments of inertia in cm(-1) A = 0.016197 B = 0.001627 C = 0.001540 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1728.260550 B =17207.354741 C =18182.962752 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.109 4.109 3 C -0.094 4.094 4 H 0.118 0.882 5 C -0.095 4.095 6 C -0.087 4.087 7 C -0.125 4.125 8 C -0.127 4.127 9 C -0.126 4.126 10 C -0.121 4.121 11 C 0.513 3.487 12 O -0.587 6.587 13 N -0.715 5.715 14 C 0.125 3.875 15 C 0.061 3.939 16 N -0.692 5.692 17 C 0.066 3.934 18 C 0.445 3.555 19 O -0.617 6.617 20 N -0.589 5.589 21 C -0.332 4.332 22 H 0.053 0.947 23 C -0.017 4.017 24 N -0.935 5.935 25 Si 0.968 3.032 26 H -0.257 1.257 27 H -0.276 1.276 28 H -0.228 1.228 29 H 0.071 0.929 30 H 0.062 0.938 31 H 0.028 0.972 32 H 0.096 0.904 33 H 0.050 0.950 34 H 0.052 0.948 35 H 0.069 0.931 36 H 0.081 0.919 37 H 0.057 0.943 38 H 0.064 0.936 39 H 0.061 0.939 40 H 0.064 0.936 41 H 0.067 0.933 42 H 0.068 0.932 43 H 0.075 0.925 44 H 0.071 0.929 45 H 0.417 0.583 46 H 0.052 0.948 47 H 0.052 0.948 48 H 0.061 0.939 49 H 0.096 0.904 50 H 0.345 0.655 51 H 0.084 0.916 52 H 0.120 0.880 53 H 0.391 0.609 54 H 0.279 0.721 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.394 -20.794 -32.554 40.274 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.147 4.147 3 C -0.115 4.115 4 H 0.136 0.864 5 C -0.133 4.133 6 C -0.105 4.105 7 C -0.163 4.163 8 C -0.165 4.165 9 C -0.164 4.164 10 C -0.158 4.158 11 C 0.301 3.699 12 O -0.467 6.467 13 N -0.368 5.368 14 C 0.000 4.000 15 C -0.068 4.068 16 N -0.325 5.325 17 C -0.066 4.066 18 C 0.233 3.767 19 O -0.502 6.502 20 N -0.231 5.231 21 C -0.461 4.461 22 H 0.071 0.929 23 C -0.215 4.215 24 N -0.576 5.576 25 Si 0.787 3.213 26 H -0.181 1.181 27 H -0.201 1.201 28 H -0.151 1.151 29 H 0.090 0.910 30 H 0.081 0.919 31 H 0.047 0.953 32 H 0.114 0.886 33 H 0.068 0.932 34 H 0.071 0.929 35 H 0.088 0.912 36 H 0.100 0.900 37 H 0.076 0.924 38 H 0.083 0.917 39 H 0.080 0.920 40 H 0.083 0.917 41 H 0.086 0.914 42 H 0.087 0.913 43 H 0.094 0.906 44 H 0.090 0.910 45 H 0.255 0.745 46 H 0.071 0.929 47 H 0.070 0.930 48 H 0.079 0.921 49 H 0.114 0.886 50 H 0.164 0.836 51 H 0.101 0.899 52 H 0.138 0.862 53 H 0.227 0.773 54 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges 10.745 -21.684 -30.969 39.303 hybrid contribution 0.580 1.392 0.070 1.509 sum 11.325 -20.292 -30.900 38.662 Atomic orbital electron populations 1.21809 0.95765 1.02479 1.01117 1.21494 0.95951 0.94350 1.02905 1.21420 0.98211 0.97693 0.94193 0.86429 1.21587 0.92004 1.01791 0.97883 1.21812 0.95505 0.99832 0.93394 1.22237 0.95300 1.00166 0.98591 1.22382 0.98032 0.99658 0.96408 1.22516 0.94513 1.01917 0.97425 1.22505 0.98634 0.99499 0.95192 1.21335 0.75297 0.81617 0.91698 1.90700 1.54332 1.65021 1.36609 1.45843 1.70271 1.10596 1.10092 1.21034 1.00280 0.92504 0.86139 1.22066 1.02024 0.91755 0.90975 1.59884 1.46325 1.12718 1.13538 1.21625 1.03726 0.88431 0.92857 1.21068 0.81458 0.81932 0.92249 1.90561 1.57051 1.64555 1.38022 1.42002 1.63539 1.09849 1.07687 1.19011 1.46263 0.94722 0.86096 0.92927 1.26171 0.95846 0.97229 1.02259 1.69815 1.46908 1.13335 1.27497 0.85327 0.80397 0.77968 0.77560 1.18112 1.20104 1.15104 0.90991 0.91861 0.95321 0.88598 0.93159 0.92900 0.91207 0.90023 0.92419 0.91695 0.91983 0.91696 0.91399 0.91314 0.90590 0.91039 0.74525 0.92943 0.92983 0.92110 0.88565 0.83616 0.89867 0.86240 0.77312 0.91132 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.12 9.63 71.98 0.69 -1.43 16 2 C -0.11 -1.43 5.06 30.59 0.15 -1.28 16 3 C -0.09 -1.11 2.12 -11.54 -0.02 -1.14 16 4 H 0.12 0.73 7.31 -2.39 -0.02 0.71 16 5 C -0.09 -1.05 3.79 30.59 0.12 -0.93 16 6 C -0.09 -0.68 2.80 -10.07 -0.03 -0.71 16 7 C -0.13 -1.13 6.45 31.32 0.20 -0.92 16 8 C -0.13 -1.02 6.84 31.69 0.22 -0.81 16 9 C -0.13 -0.82 6.91 31.91 0.22 -0.60 16 10 C -0.12 -0.70 5.46 31.67 0.17 -0.52 16 11 C 0.51 10.20 5.96 87.66 0.52 10.72 16 12 O -0.59 -17.95 16.04 -3.02 -0.05 -17.99 16 13 N -0.71 -11.12 5.55 -463.07 -2.57 -13.69 16 14 C 0.13 2.64 5.94 86.38 0.51 3.15 16 15 C 0.06 1.08 5.80 86.30 0.50 1.58 16 16 N -0.69 -19.46 6.13 -517.92 -3.17 -22.64 16 17 C 0.07 1.87 6.17 85.56 0.53 2.40 16 18 C 0.44 19.86 7.82 87.66 0.69 20.55 16 19 O -0.62 -34.61 15.78 -3.09 -0.05 -34.66 16 20 N -0.59 -27.40 5.09 -306.98 -1.56 -28.97 16 21 C -0.33 -19.48 10.16 84.04 0.85 -18.63 16 22 H 0.05 3.71 7.39 -2.91 -0.02 3.69 16 23 C -0.02 -0.92 5.50 84.92 0.47 -0.45 16 24 N -0.94 -56.50 13.96 21.66 0.30 -56.20 16 25 Si 0.97 38.09 27.74 68.60 1.90 39.99 16 26 H -0.26 -9.57 7.11 99.48 0.71 -8.86 16 27 H -0.28 -10.82 7.11 99.48 0.71 -10.11 16 28 H -0.23 -7.37 6.52 99.48 0.65 -6.72 16 29 H 0.07 0.70 8.14 -2.39 -0.02 0.68 16 30 H 0.06 0.78 8.14 -2.39 -0.02 0.76 16 31 H 0.03 0.55 7.48 -2.39 -0.02 0.54 16 32 H 0.10 0.80 6.22 -2.39 -0.01 0.79 16 33 H 0.05 0.93 7.66 -2.39 -0.02 0.91 16 34 H 0.05 0.80 8.14 -2.39 -0.02 0.78 16 35 H 0.07 0.75 8.00 -2.39 -0.02 0.73 16 36 H 0.08 0.59 6.23 -2.38 -0.01 0.58 16 37 H 0.06 0.60 7.67 -2.39 -0.02 0.59 16 38 H 0.06 0.56 8.14 -2.39 -0.02 0.54 16 39 H 0.06 0.53 8.14 -2.39 -0.02 0.51 16 40 H 0.06 0.49 8.14 -2.39 -0.02 0.47 16 41 H 0.07 0.42 8.14 -2.39 -0.02 0.40 16 42 H 0.07 0.41 8.14 -2.39 -0.02 0.39 16 43 H 0.08 0.31 8.14 -2.39 -0.02 0.29 16 44 H 0.07 0.38 7.76 -2.39 -0.02 0.36 16 45 H 0.42 3.27 8.43 -92.71 -0.78 2.49 16 46 H 0.05 1.41 8.14 -2.39 -0.02 1.39 16 47 H 0.05 1.26 8.14 -2.39 -0.02 1.24 16 48 H 0.06 0.80 8.14 -2.38 -0.02 0.78 16 49 H 0.10 1.40 8.14 -2.39 -0.02 1.38 16 50 H 0.35 10.70 8.43 -89.69 -0.76 9.94 16 51 H 0.08 1.82 8.14 -2.39 -0.02 1.80 16 52 H 0.12 2.74 8.14 -2.38 -0.02 2.72 16 53 H 0.39 14.73 5.76 -92.71 -0.53 14.20 16 54 H 0.28 15.38 8.31 -92.70 -0.77 14.61 16 Total: -1.00 -83.95 426.20 -0.64 -84.59 By element: Atomic # 1 Polarization: 39.81 SS G_CDS: -1.23 Total: 38.58 kcal Atomic # 6 Polarization: 5.19 SS G_CDS: 5.79 Total: 10.99 kcal Atomic # 7 Polarization: -114.49 SS G_CDS: -7.00 Total: -121.49 kcal Atomic # 8 Polarization: -52.56 SS G_CDS: -0.10 Total: -52.66 kcal Atomic # 14 Polarization: 38.09 SS G_CDS: 1.90 Total: 39.99 kcal Total: -83.95 -0.64 -84.59 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001134683416.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -46.621 kcal (2) G-P(sol) polarization free energy of solvation -83.952 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -130.573 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.638 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.589 kcal (6) G-S(sol) free energy of system = (1) + (5) -131.210 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds