Wall clock time and date at job start Sat Apr 11 2020 05:51:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52997 * 109.47335 * 2 1 4 4 H 1.09002 * 115.56099 * 29.30878 * 3 2 1 5 5 C 1.53077 * 117.49623 * 243.60519 * 3 2 1 6 6 C 1.52995 * 117.50143 * 174.99940 * 3 2 1 7 7 H 1.09000 * 117.49883 * 359.97438 * 6 3 2 8 8 C 1.50693 * 117.50209 * 214.97702 * 6 3 2 9 9 O 1.21281 * 120.00095 * 0.09045 * 8 6 3 10 10 N 1.34780 * 120.00182 * 180.08706 * 8 6 3 11 11 C 1.46500 * 119.99910 * 180.02562 * 10 8 6 12 12 H 1.09002 * 109.47129 * 324.99754 * 11 10 8 13 13 C 1.52997 * 109.47473 * 85.00011 * 11 10 8 14 14 C 1.52999 * 109.46944 * 205.00356 * 11 10 8 15 15 C 1.52999 * 109.47451 * 64.99440 * 14 11 10 16 16 C 1.53002 * 109.46943 * 180.02562 * 15 14 11 17 17 C 1.53003 * 109.46754 * 180.02562 * 16 15 14 18 18 N 1.46905 * 109.46843 * 180.02562 * 17 16 15 19 19 C 1.46904 * 110.99909 * 179.97438 * 18 17 16 20 20 C 1.50693 * 109.47095 * 179.97438 * 19 18 17 21 21 O 1.21296 * 120.00361 * 0.02562 * 20 19 18 22 22 N 1.34778 * 120.00276 * 179.97438 * 20 19 18 23 23 C 1.37092 * 120.00282 * 180.02562 * 22 20 19 24 24 H 1.07998 * 120.00168 * 0.02562 * 23 22 20 25 25 C 1.38955 * 119.99645 * 180.02562 * 23 22 20 26 26 N 1.31406 * 120.00537 * 359.97438 * 25 23 22 27 27 Si 1.86806 * 119.99647 * 179.97438 * 25 23 22 28 28 H 1.48501 * 109.47316 * 59.99420 * 27 25 23 29 29 H 1.48499 * 109.47045 * 179.97438 * 27 25 23 30 30 H 1.48501 * 109.46984 * 299.99801 * 27 25 23 31 31 H 1.09000 * 109.47265 * 180.02562 * 1 2 3 32 32 H 1.09000 * 109.47110 * 300.00289 * 1 2 3 33 33 H 1.09000 * 109.47155 * 59.99902 * 1 2 3 34 34 H 1.09000 * 109.47110 * 239.99711 * 2 1 3 35 35 H 1.09000 * 109.47155 * 120.00098 * 2 1 3 36 36 H 1.08994 * 117.51480 * 145.03368 * 5 3 2 37 37 H 1.09002 * 117.50978 * 359.97438 * 5 3 2 38 38 H 0.96994 * 120.00115 * 0.02562 * 10 8 6 39 39 H 1.09002 * 109.47153 * 59.99757 * 13 11 10 40 40 H 1.09001 * 109.46832 * 299.99948 * 13 11 10 41 41 H 1.09004 * 109.47261 * 179.97438 * 13 11 10 42 42 H 1.08998 * 109.47565 * 185.00189 * 14 11 10 43 43 H 1.09000 * 109.46738 * 304.99670 * 14 11 10 44 44 H 1.08996 * 109.47443 * 300.00108 * 15 14 11 45 45 H 1.09000 * 109.46961 * 60.00367 * 15 14 11 46 46 H 1.09000 * 109.47511 * 300.00080 * 16 15 14 47 47 H 1.09000 * 109.47059 * 60.00345 * 16 15 14 48 48 H 1.08996 * 109.47287 * 299.99816 * 17 16 15 49 49 H 1.09000 * 109.47306 * 60.00190 * 17 16 15 50 50 H 1.00899 * 111.00180 * 303.95431 * 18 17 16 51 51 H 1.08997 * 109.47036 * 300.00313 * 19 18 17 52 52 H 1.09002 * 109.46833 * 60.00320 * 19 18 17 53 53 H 0.97010 * 119.99428 * 0.02562 * 22 20 19 54 54 H 0.96998 * 120.00327 * 180.02562 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.3884 2.1717 0.4814 5 6 2.8447 1.9075 -1.2163 6 6 3.5501 1.6578 0.1183 7 1 4.1803 0.7719 0.1965 8 6 4.0228 2.8619 0.8913 9 8 3.2159 3.6158 1.3927 10 7 5.3424 3.1011 1.0256 11 6 5.8020 4.2714 1.7776 12 1 5.1088 5.0982 1.6223 13 6 5.8617 3.9290 3.2676 14 6 7.1950 4.6755 1.2908 15 6 7.1125 5.1370 -0.1656 16 6 8.5057 5.5405 -0.6524 17 6 8.4230 6.0026 -2.1086 18 7 9.7609 6.3895 -2.5763 19 6 9.7203 6.8391 -3.9742 20 6 11.1072 7.2273 -4.4175 21 8 12.0382 7.1378 -3.6451 22 7 11.3136 7.6731 -5.6726 23 6 12.5754 8.0258 -6.0760 24 1 13.4043 7.9460 -5.3882 25 6 12.7879 8.4858 -7.3698 26 7 11.7796 8.5824 -8.2068 27 14 14.5073 8.9670 -7.9193 28 1 15.4107 7.7943 -7.8026 29 1 14.4663 9.4210 -9.3326 30 1 15.0117 10.0679 -7.0597 31 1 -0.3634 -1.0277 0.0005 32 1 -0.3633 0.5139 0.8900 33 1 -0.3633 0.5138 -0.8900 34 1 1.8933 -0.5139 -0.8900 35 1 1.8933 -0.5138 0.8900 36 1 2.7226 2.9426 -1.5351 37 1 3.0110 1.1857 -2.0160 38 1 5.9879 2.4984 0.6243 39 1 6.5548 3.1022 3.4229 40 1 4.8692 3.6411 3.6142 41 1 6.2041 4.7996 3.8270 42 1 7.5740 5.4894 1.9090 43 1 7.8674 3.8207 1.3636 44 1 6.7336 4.3231 -0.7837 45 1 6.4401 5.9918 -0.2383 46 1 8.8851 6.3543 -0.0344 47 1 9.1778 4.6854 -0.5797 48 1 8.0436 5.1891 -2.7270 49 1 7.7511 6.8578 -2.1809 50 1 10.1617 7.0977 -1.9798 51 1 9.3495 6.0313 -4.6051 52 1 9.0576 7.7003 -4.0597 53 1 10.5691 7.7444 -6.2904 54 1 11.9280 8.9032 -9.1101 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001175351250.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:51:21 Heat of formation + Delta-G solvation = -107.918721 kcal Electronic energy + Delta-G solvation = -28061.266650 eV Core-core repulsion = 24031.343347 eV Total energy + Delta-G solvation = -4029.923303 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 339.231 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -41.15952 -40.16578 -38.66782 -37.70505 -36.84818 -35.90986 -34.32112 -33.27038 -33.00316 -31.93047 -29.68878 -27.64652 -26.05857 -25.57787 -24.61719 -23.61425 -22.09126 -21.80901 -21.47487 -21.02339 -20.99729 -19.90173 -18.31588 -17.83398 -17.41514 -17.06378 -16.54130 -16.15521 -16.02586 -15.93838 -15.75400 -15.32998 -15.30268 -15.11810 -15.07854 -14.58411 -14.42318 -13.97042 -13.66767 -13.52677 -13.49588 -13.38230 -13.31837 -13.14754 -12.99110 -12.95608 -12.78550 -12.43826 -12.33581 -12.22200 -12.14994 -12.11838 -11.93204 -11.83994 -11.59211 -11.50800 -11.41625 -11.23850 -11.02633 -10.73121 -10.35872 -10.07066 -10.02506 -9.32933 -8.46848 -5.96057 1.40126 1.42100 1.49696 1.53206 2.04095 2.17388 2.29313 2.86782 2.92145 3.20199 3.49263 3.64554 3.76250 3.80471 3.88131 3.99465 4.03870 4.19953 4.27611 4.28593 4.30904 4.32500 4.46717 4.48085 4.49686 4.54842 4.56806 4.62104 4.73651 4.77817 4.79083 4.86923 4.92889 4.94195 4.97843 4.99436 5.07146 5.15233 5.19508 5.21626 5.29039 5.29354 5.38168 5.40219 5.48576 5.49105 5.60137 5.89861 6.11516 6.41321 6.58528 6.59472 7.11715 7.27806 7.55088 8.10348 8.70256 Molecular weight = 339.23amu Principal moments of inertia in cm(-1) A = 0.015678 B = 0.001409 C = 0.001312 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1785.518804 B =19872.596477 C =21335.725229 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.090 4.090 3 C -0.125 4.125 4 H 0.091 0.909 5 C -0.140 4.140 6 C -0.193 4.193 7 H 0.149 0.851 8 C 0.538 3.462 9 O -0.589 6.589 10 N -0.708 5.708 11 C 0.142 3.858 12 H 0.064 0.936 13 C -0.158 4.158 14 C -0.117 4.117 15 C -0.109 4.109 16 C -0.109 4.109 17 C 0.059 3.941 18 N -0.685 5.685 19 C 0.065 3.935 20 C 0.436 3.564 21 O -0.624 6.624 22 N -0.572 5.572 23 C -0.338 4.338 24 H 0.079 0.921 25 C -0.011 4.011 26 N -0.920 5.920 27 Si 0.994 3.006 28 H -0.272 1.272 29 H -0.270 1.270 30 H -0.271 1.271 31 H 0.066 0.934 32 H 0.047 0.953 33 H 0.055 0.945 34 H 0.080 0.920 35 H 0.070 0.930 36 H 0.085 0.915 37 H 0.127 0.873 38 H 0.414 0.586 39 H 0.070 0.930 40 H 0.038 0.962 41 H 0.075 0.925 42 H 0.085 0.915 43 H 0.084 0.916 44 H 0.067 0.933 45 H 0.055 0.945 46 H 0.060 0.940 47 H 0.069 0.931 48 H 0.075 0.925 49 H 0.032 0.968 50 H 0.343 0.657 51 H 0.103 0.897 52 H 0.063 0.937 53 H 0.396 0.604 54 H 0.278 0.722 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.769 -16.665 17.398 31.809 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.127 4.127 3 C -0.144 4.144 4 H 0.110 0.890 5 C -0.178 4.178 6 C -0.213 4.213 7 H 0.166 0.834 8 C 0.325 3.675 9 O -0.470 6.470 10 N -0.359 5.359 11 C 0.037 3.963 12 H 0.082 0.918 13 C -0.217 4.217 14 C -0.155 4.155 15 C -0.147 4.147 16 C -0.147 4.147 17 C -0.069 4.069 18 N -0.317 5.317 19 C -0.068 4.068 20 C 0.223 3.777 21 O -0.510 6.510 22 N -0.209 5.209 23 C -0.467 4.467 24 H 0.097 0.903 25 C -0.211 4.211 26 N -0.561 5.561 27 Si 0.817 3.183 28 H -0.197 1.197 29 H -0.194 1.194 30 H -0.197 1.197 31 H 0.085 0.915 32 H 0.066 0.934 33 H 0.074 0.926 34 H 0.098 0.902 35 H 0.088 0.912 36 H 0.104 0.896 37 H 0.145 0.855 38 H 0.251 0.749 39 H 0.089 0.911 40 H 0.057 0.943 41 H 0.094 0.906 42 H 0.104 0.896 43 H 0.102 0.898 44 H 0.086 0.914 45 H 0.073 0.927 46 H 0.079 0.921 47 H 0.087 0.913 48 H 0.094 0.906 49 H 0.050 0.950 50 H 0.161 0.839 51 H 0.121 0.879 52 H 0.081 0.919 53 H 0.230 0.770 54 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -20.529 -16.752 17.900 31.976 hybrid contribution 0.296 1.276 -0.729 1.499 sum -20.233 -15.476 17.171 30.720 Atomic orbital electron populations 1.21752 0.95193 1.02206 1.01719 1.21150 0.96284 0.92350 1.02953 1.22467 0.91055 0.99311 1.01541 0.89047 1.23179 1.00985 1.03148 0.90468 1.22396 0.98077 0.98661 1.02202 0.83360 1.20155 0.82478 0.85709 0.79113 1.90674 1.55234 1.50352 1.50738 1.45987 1.06655 1.28464 1.54824 1.20971 0.96118 0.87829 0.91353 0.91777 1.22125 1.01440 1.02956 0.95154 1.21838 0.94735 1.02794 0.96145 1.21464 0.95925 1.01163 0.96162 1.21482 0.97637 1.01655 0.93887 1.22088 0.87989 0.99708 0.97157 1.60112 1.23198 1.46872 1.01541 1.21532 0.92550 1.00648 0.92067 1.20895 0.91879 0.82347 0.82536 1.90483 1.46056 1.59923 1.54567 1.41932 1.09907 1.57644 1.11453 1.19657 0.87075 1.42446 0.97534 0.90283 1.26047 1.03272 0.96624 0.95184 1.69663 1.32646 1.46667 1.07081 0.84982 0.77140 0.78700 0.77470 1.19683 1.19429 1.19664 0.91528 0.93382 0.92625 0.90161 0.91163 0.89607 0.85466 0.74881 0.91127 0.94310 0.90616 0.89626 0.89764 0.91380 0.92659 0.92106 0.91276 0.90630 0.95019 0.83871 0.87875 0.91876 0.76969 0.91255 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.38 9.87 71.98 0.71 -0.67 16 2 C -0.09 -0.80 6.22 30.59 0.19 -0.61 16 3 C -0.12 -1.65 5.25 -10.77 -0.06 -1.71 16 4 H 0.09 1.70 7.60 -2.39 -0.02 1.68 16 5 C -0.14 -1.58 9.88 30.62 0.30 -1.28 16 6 C -0.19 -2.34 5.91 -11.54 -0.07 -2.41 16 7 H 0.15 1.00 8.14 -2.39 -0.02 0.98 16 8 C 0.54 9.71 7.58 87.65 0.66 10.37 16 9 O -0.59 -16.02 15.92 -3.03 -0.05 -16.07 16 10 N -0.71 -9.11 4.53 -442.54 -2.00 -11.11 16 11 C 0.14 1.98 2.57 44.99 0.12 2.10 16 12 H 0.06 1.23 7.58 -2.39 -0.02 1.21 16 13 C -0.16 -2.09 9.48 71.98 0.68 -1.40 16 14 C -0.12 -1.30 4.75 30.59 0.15 -1.15 16 15 C -0.11 -1.51 5.10 30.59 0.16 -1.35 16 16 C -0.11 -1.95 5.47 30.60 0.17 -1.78 16 17 C 0.06 1.33 5.69 86.30 0.49 1.82 16 18 N -0.68 -21.68 6.13 -517.92 -3.17 -24.85 16 19 C 0.06 2.24 6.17 85.55 0.53 2.77 16 20 C 0.44 21.04 7.82 87.65 0.69 21.72 16 21 O -0.62 -34.98 15.78 -3.08 -0.05 -35.03 16 22 N -0.57 -29.67 5.29 -306.99 -1.62 -31.29 16 23 C -0.34 -19.32 9.68 84.04 0.81 -18.51 16 24 H 0.08 4.81 7.16 -2.91 -0.02 4.79 16 25 C -0.01 -0.61 5.50 84.93 0.47 -0.14 16 26 N -0.92 -49.69 13.05 21.66 0.28 -49.41 16 27 Si 0.99 42.87 29.55 68.60 2.03 44.90 16 28 H -0.27 -11.59 7.11 99.48 0.71 -10.88 16 29 H -0.27 -10.93 7.11 99.48 0.71 -10.23 16 30 H -0.27 -11.56 7.11 99.48 0.71 -10.85 16 31 H 0.07 0.47 8.14 -2.39 -0.02 0.45 16 32 H 0.05 0.51 8.14 -2.39 -0.02 0.49 16 33 H 0.05 0.52 8.14 -2.39 -0.02 0.50 16 34 H 0.08 0.51 7.88 -2.39 -0.02 0.49 16 35 H 0.07 0.59 8.14 -2.39 -0.02 0.57 16 36 H 0.09 1.21 8.14 -2.39 -0.02 1.20 16 37 H 0.13 0.87 8.03 -2.39 -0.02 0.85 16 38 H 0.41 3.14 8.60 -92.71 -0.80 2.34 16 39 H 0.07 0.74 8.14 -2.39 -0.02 0.72 16 40 H 0.04 0.68 8.14 -2.39 -0.02 0.66 16 41 H 0.07 0.85 8.14 -2.38 -0.02 0.83 16 42 H 0.09 0.91 8.14 -2.39 -0.02 0.89 16 43 H 0.08 0.75 8.14 -2.39 -0.02 0.73 16 44 H 0.07 0.90 7.75 -2.39 -0.02 0.88 16 45 H 0.05 0.86 8.14 -2.39 -0.02 0.84 16 46 H 0.06 1.11 8.14 -2.39 -0.02 1.09 16 47 H 0.07 1.31 8.14 -2.39 -0.02 1.29 16 48 H 0.08 1.61 8.14 -2.39 -0.02 1.59 16 49 H 0.03 0.68 8.14 -2.39 -0.02 0.66 16 50 H 0.34 11.40 8.43 -89.69 -0.76 10.65 16 51 H 0.10 3.24 8.14 -2.39 -0.02 3.22 16 52 H 0.06 1.95 8.14 -2.39 -0.02 1.93 16 53 H 0.40 19.47 7.90 -92.70 -0.73 18.74 16 54 H 0.28 14.07 8.31 -92.71 -0.77 13.30 16 Total: -1.00 -73.48 444.31 0.01 -73.48 By element: Atomic # 1 Polarization: 43.01 SS G_CDS: -1.40 Total: 41.61 kcal Atomic # 6 Polarization: 1.77 SS G_CDS: 5.99 Total: 7.77 kcal Atomic # 7 Polarization: -110.14 SS G_CDS: -6.52 Total: -116.66 kcal Atomic # 8 Polarization: -51.00 SS G_CDS: -0.10 Total: -51.10 kcal Atomic # 14 Polarization: 42.87 SS G_CDS: 2.03 Total: 44.90 kcal Total: -73.48 0.01 -73.48 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001175351250.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -34.444 kcal (2) G-P(sol) polarization free energy of solvation -73.484 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -107.928 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.009 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.475 kcal (6) G-S(sol) free energy of system = (1) + (5) -107.919 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds