Wall clock time and date at job start Sat Apr 11 2020 05:51:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53013 * 109.47026 * 2 1 4 4 H 1.08998 * 115.55527 * 29.30731 * 3 2 1 5 5 C 1.53074 * 117.49166 * 243.60161 * 3 2 1 6 6 C 1.53000 * 117.49794 * 174.99793 * 3 2 1 7 7 H 1.08994 * 117.49962 * 359.97438 * 6 3 2 8 8 C 1.50697 * 117.49441 * 214.97894 * 6 3 2 9 9 O 1.21283 * 120.00667 * 0.08772 * 8 6 3 10 10 N 1.34781 * 119.99747 * 180.08568 * 8 6 3 11 11 C 1.46500 * 119.99732 * 179.97438 * 10 8 6 12 12 H 1.09000 * 109.47381 * 35.00069 * 11 10 8 13 13 C 1.53006 * 109.47249 * 274.99921 * 11 10 8 14 14 C 1.52999 * 109.46944 * 155.00564 * 11 10 8 15 15 C 1.53009 * 109.46984 * 294.99645 * 14 11 10 16 16 C 1.52989 * 109.47113 * 179.97438 * 15 14 11 17 17 C 1.53009 * 109.47113 * 179.97438 * 16 15 14 18 18 N 1.46902 * 109.47010 * 180.02562 * 17 16 15 19 19 C 1.46899 * 110.99627 * 179.97438 * 18 17 16 20 20 C 1.50698 * 109.47135 * 179.97438 * 19 18 17 21 21 O 1.21290 * 120.00238 * 0.02562 * 20 19 18 22 22 N 1.34779 * 120.00083 * 179.97438 * 20 19 18 23 23 C 1.37096 * 120.00011 * 180.02562 * 22 20 19 24 24 H 1.07995 * 120.00031 * 359.97438 * 23 22 20 25 25 C 1.38952 * 119.99847 * 180.02562 * 23 22 20 26 26 N 1.31407 * 120.00033 * 359.97438 * 25 23 22 27 27 Si 1.86801 * 119.99858 * 179.97438 * 25 23 22 28 28 H 1.48497 * 109.47465 * 89.99519 * 27 25 23 29 29 H 1.48495 * 109.47204 * 209.99974 * 27 25 23 30 30 H 1.48507 * 109.46839 * 330.00043 * 27 25 23 31 31 H 1.09003 * 109.46968 * 60.00243 * 1 2 3 32 32 H 1.09000 * 109.46896 * 179.97438 * 1 2 3 33 33 H 1.08997 * 109.47243 * 300.00587 * 1 2 3 34 34 H 1.09000 * 109.47742 * 239.99980 * 2 1 3 35 35 H 1.08995 * 109.47129 * 119.99538 * 2 1 3 36 36 H 1.08999 * 117.51364 * 145.03762 * 5 3 2 37 37 H 1.09000 * 117.51749 * 359.97438 * 5 3 2 38 38 H 0.96998 * 119.99903 * 0.02562 * 10 8 6 39 39 H 1.09001 * 109.47002 * 60.00085 * 13 11 10 40 40 H 1.08993 * 109.46955 * 180.02562 * 13 11 10 41 41 H 1.09000 * 109.47050 * 300.00351 * 13 11 10 42 42 H 1.08997 * 109.47756 * 54.99315 * 14 11 10 43 43 H 1.09001 * 109.47317 * 175.00198 * 14 11 10 44 44 H 1.08999 * 109.47112 * 300.00392 * 15 14 11 45 45 H 1.09001 * 109.46642 * 60.00139 * 15 14 11 46 46 H 1.08999 * 109.47464 * 300.00192 * 16 15 14 47 47 H 1.09001 * 109.47240 * 60.00521 * 16 15 14 48 48 H 1.08997 * 109.46604 * 300.00391 * 17 16 15 49 49 H 1.08993 * 109.46833 * 59.99859 * 17 16 15 50 50 H 1.00898 * 110.99731 * 303.94823 * 18 17 16 51 51 H 1.09000 * 109.47399 * 300.00148 * 19 18 17 52 52 H 1.09007 * 109.47322 * 59.99973 * 19 18 17 53 53 H 0.97004 * 120.00087 * 0.02562 * 22 20 19 54 54 H 0.96998 * 119.99903 * 179.97438 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 1.3883 2.1717 0.4813 5 6 2.8447 1.9076 -1.2163 6 6 3.5501 1.6580 0.1183 7 1 4.1802 0.7721 0.1966 8 6 4.0227 2.8621 0.8915 9 8 3.2157 3.6160 1.3928 10 7 5.3423 3.1014 1.0258 11 6 5.8016 4.2723 1.7769 12 1 5.1240 4.4582 2.6102 13 6 5.8234 5.4933 0.8551 14 6 7.2109 4.0133 2.3134 15 6 7.1673 2.8713 3.3309 16 6 8.5766 2.6119 3.8669 17 6 8.5329 1.4703 4.8848 18 7 9.8860 1.2216 5.3999 19 6 9.8826 0.1297 6.3826 20 6 11.2846 -0.0964 6.8871 21 8 12.1967 0.5853 6.4695 22 7 11.5247 -1.0554 7.8031 23 6 12.8000 -1.2608 8.2624 24 1 13.6123 -0.6543 7.8899 25 6 13.0476 -2.2499 9.2064 26 7 12.0593 -2.9881 9.6592 27 14 14.7854 -2.5302 9.8317 28 1 15.0255 -1.6791 11.0247 29 1 14.9544 -3.9586 10.2005 30 1 15.7578 -2.1755 8.7668 31 1 -0.3633 0.5138 -0.8900 32 1 -0.3633 -1.0277 -0.0005 33 1 -0.3633 0.5139 0.8899 34 1 1.8934 -0.5138 -0.8899 35 1 1.8933 -0.5137 0.8900 36 1 2.7226 2.9427 -1.5351 37 1 3.0111 1.1858 -2.0160 38 1 5.9877 2.4987 0.6246 39 1 4.8195 5.6778 0.4728 40 1 6.1656 6.3643 1.4138 41 1 6.5010 5.3073 0.0218 42 1 7.8692 3.7402 1.4888 43 1 7.5875 4.9153 2.7957 44 1 6.5090 3.1443 4.1556 45 1 6.7907 1.9693 2.8486 46 1 9.2345 2.3386 3.0420 47 1 8.9537 3.5138 4.3491 48 1 7.8751 1.7440 5.7096 49 1 8.1556 0.5683 4.4031 50 1 10.5297 1.0291 4.6472 51 1 9.2339 0.3943 7.2176 52 1 9.5149 -0.7820 5.9116 53 1 10.7951 -1.6004 8.1374 54 1 12.2322 -3.6788 10.3179 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001175351251.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:51:24 Heat of formation + Delta-G solvation = -108.031968 kcal Electronic energy + Delta-G solvation = -28048.511822 eV Core-core repulsion = 24018.583608 eV Total energy + Delta-G solvation = -4029.928214 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 339.231 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -41.16187 -40.17007 -38.67003 -37.70673 -36.85165 -35.91371 -34.32384 -33.27343 -33.00383 -31.93852 -29.69268 -27.64941 -26.05368 -25.58170 -24.61210 -23.62969 -22.09228 -21.83359 -21.46250 -21.02841 -21.00254 -19.90540 -18.32952 -17.81866 -17.37479 -17.13887 -16.52739 -16.16686 -16.02887 -15.93178 -15.64577 -15.48370 -15.24939 -15.13329 -14.99317 -14.76602 -14.35058 -13.98423 -13.64950 -13.53523 -13.48568 -13.39517 -13.32443 -13.13358 -12.99251 -12.94482 -12.79922 -12.42790 -12.39362 -12.20343 -12.12815 -12.10846 -11.93708 -11.87201 -11.55957 -11.51678 -11.42905 -11.24847 -11.02823 -10.73525 -10.36158 -10.07346 -10.02691 -9.32153 -8.47316 -5.96449 1.38181 1.42024 1.49632 1.54917 2.03756 2.17270 2.29091 2.86090 2.91993 3.19822 3.49251 3.64239 3.75443 3.79742 3.86678 4.01089 4.06326 4.18723 4.24229 4.27893 4.29956 4.35502 4.44523 4.47903 4.52446 4.55032 4.56462 4.61608 4.73905 4.77206 4.77492 4.84439 4.91842 4.94003 4.96745 5.00893 5.08797 5.15159 5.18757 5.21635 5.28157 5.28656 5.38855 5.40235 5.48348 5.48909 5.59836 5.89825 6.11539 6.43225 6.58333 6.59134 7.11518 7.27776 7.54850 8.10042 8.70068 Molecular weight = 339.23amu Principal moments of inertia in cm(-1) A = 0.014246 B = 0.001428 C = 0.001321 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1964.948618 B =19603.991211 C =21195.455751 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.091 4.091 3 C -0.127 4.127 4 H 0.091 0.909 5 C -0.135 4.135 6 C -0.195 4.195 7 H 0.146 0.854 8 C 0.537 3.463 9 O -0.589 6.589 10 N -0.708 5.708 11 C 0.141 3.859 12 H 0.064 0.936 13 C -0.158 4.158 14 C -0.117 4.117 15 C -0.109 4.109 16 C -0.109 4.109 17 C 0.059 3.941 18 N -0.686 5.686 19 C 0.065 3.935 20 C 0.436 3.564 21 O -0.623 6.623 22 N -0.573 5.573 23 C -0.337 4.337 24 H 0.079 0.921 25 C -0.012 4.012 26 N -0.920 5.920 27 Si 0.994 3.006 28 H -0.271 1.271 29 H -0.270 1.270 30 H -0.272 1.272 31 H 0.057 0.943 32 H 0.064 0.936 33 H 0.046 0.954 34 H 0.081 0.919 35 H 0.066 0.934 36 H 0.088 0.912 37 H 0.129 0.871 38 H 0.414 0.586 39 H 0.038 0.962 40 H 0.074 0.926 41 H 0.070 0.930 42 H 0.085 0.915 43 H 0.084 0.916 44 H 0.055 0.945 45 H 0.067 0.933 46 H 0.067 0.933 47 H 0.062 0.938 48 H 0.069 0.931 49 H 0.038 0.962 50 H 0.344 0.656 51 H 0.100 0.900 52 H 0.066 0.934 53 H 0.396 0.604 54 H 0.278 0.722 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.077 7.583 -23.492 32.460 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.128 4.128 3 C -0.146 4.146 4 H 0.109 0.891 5 C -0.172 4.172 6 C -0.216 4.216 7 H 0.164 0.836 8 C 0.325 3.675 9 O -0.470 6.470 10 N -0.359 5.359 11 C 0.037 3.963 12 H 0.082 0.918 13 C -0.216 4.216 14 C -0.155 4.155 15 C -0.147 4.147 16 C -0.147 4.147 17 C -0.069 4.069 18 N -0.319 5.319 19 C -0.068 4.068 20 C 0.224 3.776 21 O -0.510 6.510 22 N -0.210 5.210 23 C -0.466 4.466 24 H 0.097 0.903 25 C -0.212 4.212 26 N -0.561 5.561 27 Si 0.818 3.182 28 H -0.197 1.197 29 H -0.195 1.195 30 H -0.197 1.197 31 H 0.076 0.924 32 H 0.083 0.917 33 H 0.065 0.935 34 H 0.100 0.900 35 H 0.085 0.915 36 H 0.107 0.893 37 H 0.147 0.853 38 H 0.251 0.749 39 H 0.057 0.943 40 H 0.093 0.907 41 H 0.089 0.911 42 H 0.103 0.897 43 H 0.103 0.897 44 H 0.074 0.926 45 H 0.086 0.914 46 H 0.086 0.914 47 H 0.080 0.920 48 H 0.088 0.912 49 H 0.056 0.944 50 H 0.163 0.837 51 H 0.119 0.881 52 H 0.084 0.916 53 H 0.230 0.770 54 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -21.062 8.910 -22.781 32.279 hybrid contribution 0.590 -1.302 0.241 1.450 sum -20.472 7.608 -22.539 31.385 Atomic orbital electron populations 1.21749 0.95161 1.02171 1.01759 1.21155 0.96332 0.92490 1.02873 1.22461 0.91089 0.99209 1.01818 0.89060 1.23179 1.00520 1.03223 0.90271 1.22396 0.98108 0.98629 1.02469 0.83585 1.20157 0.82490 0.85628 0.79193 1.90676 1.55229 1.50639 1.50451 1.45980 1.06645 1.28366 1.54912 1.20973 0.96050 0.85325 0.93950 0.91791 1.22120 1.01408 0.97752 1.00348 1.21839 0.94544 0.99774 0.99343 1.21468 0.95852 0.98915 0.98511 1.21480 0.97468 0.97983 0.97733 1.22079 0.88799 0.98116 0.97935 1.60083 1.09504 1.43574 1.18734 1.21529 0.93094 0.94482 0.97679 1.20894 0.91785 0.82253 0.82681 1.90482 1.47848 1.50472 1.62206 1.41940 1.09696 1.31983 1.37368 1.19692 0.86652 1.17903 1.22367 0.90281 1.26056 1.03517 0.95202 0.96438 1.69671 1.33283 1.22016 1.31119 0.84909 0.77051 0.77840 0.78417 1.19686 1.19457 1.19690 0.92352 0.91659 0.93503 0.90018 0.91550 0.89325 0.85300 0.74891 0.94321 0.90665 0.91105 0.89670 0.89712 0.92647 0.91389 0.91398 0.91958 0.91245 0.94415 0.83709 0.88148 0.91626 0.76971 0.91264 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.44 9.87 71.98 0.71 -0.73 16 2 C -0.09 -0.86 6.22 30.60 0.19 -0.67 16 3 C -0.13 -1.66 5.25 -10.76 -0.06 -1.71 16 4 H 0.09 1.69 7.60 -2.39 -0.02 1.67 16 5 C -0.13 -1.31 9.88 30.62 0.30 -1.01 16 6 C -0.20 -2.33 5.91 -11.54 -0.07 -2.40 16 7 H 0.15 1.04 8.14 -2.39 -0.02 1.03 16 8 C 0.54 9.63 7.58 87.66 0.66 10.30 16 9 O -0.59 -16.01 15.92 -3.04 -0.05 -16.05 16 10 N -0.71 -8.95 4.53 -442.52 -2.00 -10.96 16 11 C 0.14 1.98 2.57 44.99 0.12 2.10 16 12 H 0.06 1.24 7.58 -2.39 -0.02 1.22 16 13 C -0.16 -2.07 9.48 71.98 0.68 -1.39 16 14 C -0.12 -1.30 4.75 30.60 0.15 -1.15 16 15 C -0.11 -1.52 5.10 30.59 0.16 -1.36 16 16 C -0.11 -1.95 5.47 30.59 0.17 -1.78 16 17 C 0.06 1.34 5.69 86.31 0.49 1.83 16 18 N -0.69 -21.76 6.13 -517.92 -3.17 -24.93 16 19 C 0.06 2.25 6.17 85.56 0.53 2.78 16 20 C 0.44 21.08 7.82 87.66 0.69 21.77 16 21 O -0.62 -35.01 15.78 -3.06 -0.05 -35.06 16 22 N -0.57 -29.74 5.29 -306.99 -1.62 -31.36 16 23 C -0.34 -19.29 9.68 84.04 0.81 -18.48 16 24 H 0.08 4.82 7.16 -2.91 -0.02 4.80 16 25 C -0.01 -0.66 5.50 84.93 0.47 -0.19 16 26 N -0.92 -49.77 13.05 21.66 0.28 -49.49 16 27 Si 0.99 42.95 29.55 68.60 2.03 44.98 16 28 H -0.27 -11.41 7.11 99.48 0.71 -10.71 16 29 H -0.27 -10.99 7.11 99.48 0.71 -10.28 16 30 H -0.27 -11.78 7.11 99.48 0.71 -11.07 16 31 H 0.06 0.52 8.14 -2.39 -0.02 0.50 16 32 H 0.06 0.51 8.14 -2.39 -0.02 0.49 16 33 H 0.05 0.53 8.14 -2.39 -0.02 0.51 16 34 H 0.08 0.52 7.88 -2.39 -0.02 0.50 16 35 H 0.07 0.66 8.14 -2.39 -0.02 0.64 16 36 H 0.09 1.04 8.14 -2.39 -0.02 1.02 16 37 H 0.13 0.63 8.03 -2.39 -0.02 0.61 16 38 H 0.41 2.97 8.60 -92.71 -0.80 2.17 16 39 H 0.04 0.67 8.14 -2.39 -0.02 0.65 16 40 H 0.07 0.86 8.14 -2.39 -0.02 0.84 16 41 H 0.07 0.73 8.14 -2.39 -0.02 0.72 16 42 H 0.08 0.72 8.14 -2.39 -0.02 0.70 16 43 H 0.08 0.94 8.14 -2.39 -0.02 0.92 16 44 H 0.05 0.89 8.14 -2.39 -0.02 0.87 16 45 H 0.07 0.86 7.75 -2.39 -0.02 0.84 16 46 H 0.07 1.14 8.14 -2.39 -0.02 1.13 16 47 H 0.06 1.27 8.14 -2.39 -0.02 1.25 16 48 H 0.07 1.57 8.14 -2.39 -0.02 1.56 16 49 H 0.04 0.77 8.14 -2.39 -0.02 0.75 16 50 H 0.34 11.26 8.43 -89.70 -0.76 10.50 16 51 H 0.10 3.22 8.14 -2.39 -0.02 3.20 16 52 H 0.07 2.00 8.14 -2.38 -0.02 1.98 16 53 H 0.40 19.50 7.90 -92.71 -0.73 18.77 16 54 H 0.28 14.04 8.31 -92.71 -0.77 13.27 16 Total: -1.00 -73.93 444.31 0.01 -73.92 By element: Atomic # 1 Polarization: 42.46 SS G_CDS: -1.40 Total: 41.06 kcal Atomic # 6 Polarization: 1.89 SS G_CDS: 5.99 Total: 7.89 kcal Atomic # 7 Polarization: -110.22 SS G_CDS: -6.52 Total: -116.74 kcal Atomic # 8 Polarization: -51.01 SS G_CDS: -0.10 Total: -51.11 kcal Atomic # 14 Polarization: 42.95 SS G_CDS: 2.03 Total: 44.98 kcal Total: -73.93 0.01 -73.92 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001175351251.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -34.109 kcal (2) G-P(sol) polarization free energy of solvation -73.932 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -108.041 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.009 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.923 kcal (6) G-S(sol) free energy of system = (1) + (5) -108.032 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds