Wall clock time and date at job start Sat Apr 11 2020 05:49:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52993 * 109.47280 * 2 1 4 4 C 1.50699 * 109.46832 * 239.99654 * 2 1 3 5 5 H 1.07998 * 120.00316 * 239.99821 * 4 2 1 6 6 C 1.37881 * 119.99959 * 60.00794 * 4 2 1 7 7 N 1.31517 * 119.99606 * 359.97438 * 6 4 2 8 8 Si 1.86793 * 119.99960 * 179.97438 * 6 4 2 9 9 H 1.48498 * 109.47397 * 359.97438 * 8 6 4 10 10 H 1.48498 * 109.47258 * 119.99576 * 8 6 4 11 11 H 1.48504 * 109.47207 * 239.99564 * 8 6 4 12 12 C 1.53001 * 109.46767 * 120.00182 * 2 1 3 13 13 N 1.46500 * 109.47254 * 299.99305 * 12 2 1 14 14 C 1.34779 * 120.00048 * 180.02562 * 13 12 2 15 15 O 1.21583 * 119.99751 * 354.92132 * 14 13 12 16 16 N 1.34773 * 119.99573 * 174.92473 * 14 13 12 17 17 C 1.47083 * 120.87916 * 184.71798 * 16 14 13 18 18 C 1.53690 * 108.28136 * 128.75306 * 17 16 14 19 19 N 1.46900 * 109.25535 * 54.08296 * 18 17 16 20 20 C 1.46900 * 111.00081 * 172.61189 * 19 18 17 21 21 C 1.53179 * 109.54385 * 59.12197 * 20 19 18 22 22 C 1.53102 * 109.15701 * 183.24210 * 21 20 19 23 23 O 1.42907 * 109.48860 * 57.47347 * 22 21 20 24 24 C 1.42901 * 114.09752 * 298.89076 * 23 22 21 25 25 C 1.53093 * 109.41503 * 61.15673 * 24 23 22 26 26 C 1.46903 * 111.26715 * 296.75832 * 19 18 17 27 27 C 1.47074 * 120.88543 * 4.99424 * 16 14 13 28 28 H 1.09007 * 109.47034 * 299.99923 * 1 2 3 29 29 H 1.08994 * 109.47072 * 59.99898 * 1 2 3 30 30 H 1.08996 * 109.47370 * 179.97438 * 1 2 3 31 31 H 1.09006 * 109.47450 * 179.97438 * 3 2 1 32 32 H 1.08994 * 109.47152 * 300.00053 * 3 2 1 33 33 H 1.09003 * 109.47460 * 60.00241 * 3 2 1 34 34 H 0.97005 * 119.99284 * 180.02562 * 7 6 4 35 35 H 1.09002 * 109.47604 * 60.00118 * 12 2 1 36 36 H 1.09006 * 109.46923 * 180.02562 * 12 2 1 37 37 H 0.96999 * 120.00154 * 0.02562 * 13 12 2 38 38 H 1.09003 * 109.62803 * 248.52241 * 17 16 14 39 39 H 1.09007 * 109.62840 * 9.10011 * 17 16 14 40 40 H 1.09003 * 109.64947 * 294.08195 * 18 17 16 41 41 H 1.08994 * 109.42550 * 173.94909 * 18 17 16 42 42 H 1.09000 * 109.54199 * 179.30304 * 20 19 18 43 43 H 1.08997 * 109.52438 * 303.06220 * 21 20 19 44 44 H 1.09000 * 109.52357 * 63.25127 * 21 20 19 45 45 H 1.08999 * 109.40901 * 297.49671 * 22 21 20 46 46 H 1.09000 * 109.49371 * 177.50885 * 22 21 20 47 47 H 1.09000 * 109.48123 * 301.17115 * 24 23 22 48 48 H 1.08998 * 109.49314 * 181.14291 * 24 23 22 49 49 H 1.09000 * 109.52509 * 182.48544 * 25 24 23 50 50 H 1.08996 * 109.57538 * 62.32732 * 25 24 23 51 51 H 1.08997 * 109.49283 * 303.14331 * 26 19 18 52 52 H 1.09003 * 109.49437 * 183.06483 * 26 19 18 53 53 H 1.09001 * 109.62985 * 350.89625 * 27 16 14 54 54 H 1.09004 * 109.63133 * 111.47976 * 27 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0322 -0.7105 -1.2304 5 1 2.6532 -1.5886 -1.1314 6 6 1.6992 -0.2394 -2.4827 7 7 0.9429 0.8297 -2.6033 8 14 2.3224 -1.1196 -4.0079 9 1 3.1481 -2.2858 -3.6038 10 1 1.1677 -1.5866 -4.8164 11 1 3.1472 -0.1859 -4.8161 12 6 2.0399 -0.7213 1.2493 13 7 1.5517 -0.0306 2.4454 14 6 1.8777 -0.4909 3.6696 15 8 2.4987 -1.5300 3.7828 16 7 1.5152 0.2008 4.7680 17 6 1.9480 -0.2276 6.1068 18 6 2.5771 0.9801 6.8195 19 7 1.6275 2.1008 6.8034 20 6 2.1162 3.2168 7.6241 21 6 3.4710 3.6912 7.0893 22 6 4.0098 4.7992 7.9982 23 8 4.1129 4.3097 9.3369 24 6 2.8681 3.8972 9.9047 25 6 2.2845 2.7515 9.0738 26 6 1.3458 2.5408 5.4305 27 6 0.6713 1.4006 4.6603 28 1 -0.3633 0.5139 0.8901 29 1 -0.3633 0.5138 -0.8899 30 1 -0.3634 -1.0276 -0.0005 31 1 3.1301 1.4424 0.0005 32 1 1.6767 1.9562 -0.8899 33 1 1.6767 1.9563 0.8900 34 1 0.7083 1.1609 -3.4844 35 1 1.6766 -1.7490 1.2493 36 1 3.1300 -0.7209 1.2495 37 1 0.9938 0.7579 2.3565 38 1 1.0875 -0.5835 6.6734 39 1 2.6853 -1.0253 6.0155 40 1 3.4932 1.2723 6.3061 41 1 2.8071 0.7130 7.8509 42 1 1.4009 4.0384 7.5855 43 1 4.1716 2.8564 7.0801 44 1 3.3484 4.0762 6.0769 45 1 3.3295 5.6505 7.9739 46 1 4.9941 5.1103 7.6481 47 1 2.1729 4.7367 9.9054 48 1 3.0297 3.5584 10.9280 49 1 1.3141 2.4650 9.4793 50 1 2.9595 1.8964 9.1059 51 1 2.2790 2.8112 4.9365 52 1 0.6826 3.4056 5.4545 53 1 0.5639 1.6799 3.6122 54 1 -0.3096 1.1982 5.0906 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001413863150.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:49:06 Heat of formation + Delta-G solvation = -80.826298 kcal Electronic energy + Delta-G solvation = -31313.295746 eV Core-core repulsion = 27284.547258 eV Total energy + Delta-G solvation = -4028.748488 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 339.231 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -41.65189 -40.68995 -38.93223 -38.08525 -36.09470 -35.04939 -32.98883 -32.61474 -32.04276 -31.75946 -28.34207 -27.57674 -27.41947 -26.50853 -25.13238 -24.49464 -24.30678 -22.69135 -21.12467 -20.64289 -20.17529 -19.19004 -17.86230 -17.49448 -17.13709 -17.04255 -16.71866 -16.64933 -16.35282 -15.98996 -15.57481 -15.56164 -15.38754 -15.13945 -14.95822 -14.70289 -14.60776 -14.44381 -14.03345 -13.88630 -13.25201 -13.18794 -13.12175 -13.07192 -12.71090 -12.68143 -12.57625 -12.56452 -12.50899 -12.26245 -12.13672 -11.98362 -11.85684 -11.76308 -11.49938 -11.37201 -11.20671 -11.03196 -10.70969 -10.57415 -10.40887 -10.16054 -9.60524 -9.20392 -8.02945 -6.18094 1.41062 1.45205 1.54371 1.66090 2.13285 2.45465 2.77389 2.99214 3.00615 3.20776 3.68517 3.74108 3.87783 3.97868 4.01187 4.13272 4.17297 4.20504 4.29463 4.34943 4.41532 4.43051 4.51688 4.51753 4.61002 4.68719 4.72371 4.73068 4.79099 4.84120 4.84681 4.90640 4.98013 5.00107 5.03861 5.08415 5.09161 5.18537 5.18878 5.28094 5.36973 5.49911 5.61019 5.66319 5.67331 5.86680 5.98786 6.08066 6.14197 6.20849 6.27808 6.43366 6.85770 7.00030 7.49442 7.57069 8.96365 Molecular weight = 339.23amu Principal moments of inertia in cm(-1) A = 0.022169 B = 0.002262 C = 0.002178 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1262.723298 B =12375.326693 C =12851.762828 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 C 0.053 3.947 3 C -0.118 4.118 4 C -0.527 4.527 5 H 0.043 0.957 6 C 0.029 3.971 7 N -0.898 5.898 8 Si 0.945 3.055 9 H -0.277 1.277 10 H -0.281 1.281 11 H -0.281 1.281 12 C 0.167 3.833 13 N -0.726 5.726 14 C 0.698 3.302 15 O -0.641 6.641 16 N -0.630 5.630 17 C 0.135 3.865 18 C 0.046 3.954 19 N -0.525 5.525 20 C 0.086 3.914 21 C -0.188 4.188 22 C 0.066 3.934 23 O -0.407 6.407 24 C 0.059 3.941 25 C -0.145 4.145 26 C 0.044 3.956 27 C 0.113 3.887 28 H 0.034 0.966 29 H 0.064 0.936 30 H 0.017 0.983 31 H 0.017 0.983 32 H 0.064 0.936 33 H 0.034 0.966 34 H 0.260 0.740 35 H 0.034 0.966 36 H 0.033 0.967 37 H 0.403 0.597 38 H 0.083 0.917 39 H 0.074 0.926 40 H 0.026 0.974 41 H 0.104 0.896 42 H 0.098 0.902 43 H 0.057 0.943 44 H 0.074 0.926 45 H 0.065 0.935 46 H 0.093 0.907 47 H 0.064 0.936 48 H 0.106 0.894 49 H 0.093 0.907 50 H 0.065 0.935 51 H 0.031 0.969 52 H 0.111 0.889 53 H 0.083 0.917 54 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.470 11.148 24.379 26.847 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C 0.052 3.948 3 C -0.175 4.175 4 C -0.565 4.565 5 H 0.062 0.938 6 C -0.171 4.171 7 N -0.537 5.537 8 Si 0.772 3.228 9 H -0.201 1.201 10 H -0.207 1.207 11 H -0.207 1.207 12 C 0.043 3.957 13 N -0.384 5.384 14 C 0.399 3.601 15 O -0.523 6.523 16 N -0.368 5.368 17 C 0.012 3.988 18 C -0.083 4.083 19 N -0.248 5.248 20 C -0.022 4.022 21 C -0.227 4.227 22 C -0.011 4.011 23 O -0.326 6.326 24 C -0.018 4.018 25 C -0.183 4.183 26 C -0.085 4.085 27 C -0.010 4.010 28 H 0.053 0.947 29 H 0.083 0.917 30 H 0.036 0.964 31 H 0.036 0.964 32 H 0.083 0.917 33 H 0.053 0.947 34 H 0.070 0.930 35 H 0.052 0.948 36 H 0.051 0.949 37 H 0.242 0.758 38 H 0.101 0.899 39 H 0.092 0.908 40 H 0.044 0.956 41 H 0.122 0.878 42 H 0.116 0.884 43 H 0.076 0.924 44 H 0.092 0.908 45 H 0.083 0.917 46 H 0.112 0.888 47 H 0.082 0.918 48 H 0.124 0.876 49 H 0.111 0.889 50 H 0.084 0.916 51 H 0.050 0.950 52 H 0.130 0.870 53 H 0.101 0.899 54 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges -1.379 10.341 24.584 26.706 hybrid contribution 0.825 -0.160 -1.898 2.076 sum -0.554 10.181 22.685 24.872 Atomic orbital electron populations 1.21655 0.97053 0.98660 1.00303 1.18355 0.93297 0.93059 0.90111 1.21644 0.97841 0.97773 1.00284 1.21276 1.31643 1.12104 0.91519 0.93845 1.25440 0.95157 0.95620 1.00908 1.69908 1.36979 1.23273 1.23562 0.85704 0.78136 0.78711 0.80233 1.20146 1.20668 1.20668 1.21136 0.96489 0.94762 0.83345 1.45366 1.55893 1.33210 1.03899 1.16131 0.79631 0.82968 0.81371 1.90836 1.49108 1.26003 1.86376 1.47374 1.54778 1.29433 1.05184 1.21686 1.00085 0.96582 0.80470 1.22583 0.93151 0.91164 1.01372 1.62200 1.43869 1.07641 1.11082 1.21840 0.94170 0.93077 0.93107 1.22859 0.99086 1.00170 1.00564 1.22550 1.02281 0.94913 0.81401 1.87922 1.32234 1.83592 1.28840 1.22735 0.85346 0.96221 0.97500 1.22273 1.02793 0.99119 0.94073 1.22490 1.00028 0.97710 0.88254 1.21917 0.94529 0.83670 1.00877 0.94674 0.91693 0.96377 0.96421 0.91699 0.94708 0.92990 0.94784 0.94863 0.75772 0.89910 0.90794 0.95581 0.87784 0.88387 0.92431 0.90767 0.91688 0.88845 0.91784 0.87642 0.88875 0.91609 0.95040 0.87040 0.89871 0.89113 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.30 8.08 71.98 0.58 -4.72 16 2 C 0.05 2.45 0.50 -52.93 -0.03 2.42 16 3 C -0.12 -5.21 8.08 71.98 0.58 -4.63 16 4 C -0.53 -28.08 8.01 25.60 0.21 -27.88 16 5 H 0.04 2.38 7.74 -2.91 -0.02 2.36 16 6 C 0.03 1.50 5.15 84.66 0.44 1.94 16 7 N -0.90 -47.62 9.35 21.45 0.20 -47.42 16 8 Si 0.95 42.75 29.54 68.60 2.03 44.78 16 9 H -0.28 -12.58 7.11 99.48 0.71 -11.87 16 10 H -0.28 -12.47 7.11 99.48 0.71 -11.77 16 11 H -0.28 -12.46 7.11 99.48 0.71 -11.75 16 12 C 0.17 7.39 4.51 86.38 0.39 7.78 16 13 N -0.73 -26.48 4.87 -478.53 -2.33 -28.82 16 14 C 0.70 25.74 8.31 179.05 1.49 27.23 16 15 O -0.64 -29.14 15.83 -3.98 -0.06 -29.20 16 16 N -0.63 -17.11 3.00 -835.04 -2.51 -19.62 16 17 C 0.13 3.15 6.61 86.50 0.57 3.73 16 18 C 0.05 0.85 4.78 86.54 0.41 1.26 16 19 N -0.52 -8.05 4.62 -868.38 -4.01 -12.06 16 20 C 0.09 1.07 2.32 45.04 0.10 1.17 16 21 C -0.19 -2.66 4.74 30.69 0.15 -2.52 16 22 C 0.07 0.86 6.84 72.02 0.49 1.35 16 23 O -0.41 -6.59 10.77 -148.98 -1.60 -8.20 16 24 C 0.06 0.62 6.84 72.01 0.49 1.11 16 25 C -0.14 -1.58 5.31 30.69 0.16 -1.42 16 26 C 0.04 0.70 5.14 86.38 0.44 1.14 16 27 C 0.11 2.22 6.59 86.35 0.57 2.79 16 28 H 0.03 1.31 6.86 -2.38 -0.02 1.29 16 29 H 0.06 3.19 6.07 -2.39 -0.01 3.18 16 30 H 0.02 0.79 8.14 -2.39 -0.02 0.77 16 31 H 0.02 0.77 8.14 -2.38 -0.02 0.75 16 32 H 0.06 3.18 6.07 -2.39 -0.01 3.16 16 33 H 0.03 1.28 6.86 -2.39 -0.02 1.26 16 34 H 0.26 13.24 8.31 -92.70 -0.77 12.47 16 35 H 0.03 1.62 8.14 -2.39 -0.02 1.60 16 36 H 0.03 1.57 8.14 -2.38 -0.02 1.55 16 37 H 0.40 12.74 3.66 -92.71 -0.34 12.40 16 38 H 0.08 1.71 8.14 -2.39 -0.02 1.69 16 39 H 0.07 2.06 7.09 -2.38 -0.02 2.05 16 40 H 0.03 0.58 6.65 -2.39 -0.02 0.56 16 41 H 0.10 1.60 5.91 -2.39 -0.01 1.59 16 42 H 0.10 1.01 8.07 -2.39 -0.02 0.99 16 43 H 0.06 1.04 6.40 -2.39 -0.02 1.02 16 44 H 0.07 1.07 6.87 -2.39 -0.02 1.06 16 45 H 0.06 0.66 8.14 -2.39 -0.02 0.64 16 46 H 0.09 1.17 8.14 -2.39 -0.02 1.15 16 47 H 0.06 0.51 8.14 -2.39 -0.02 0.50 16 48 H 0.11 0.88 8.14 -2.39 -0.02 0.86 16 49 H 0.09 0.85 8.14 -2.39 -0.02 0.84 16 50 H 0.07 0.85 6.12 -2.39 -0.01 0.84 16 51 H 0.03 0.59 6.90 -2.39 -0.02 0.58 16 52 H 0.11 1.26 8.06 -2.39 -0.02 1.24 16 53 H 0.08 1.64 5.63 -2.39 -0.01 1.62 16 54 H 0.09 1.56 8.14 -2.38 -0.02 1.54 16 Total: -1.00 -64.92 393.94 -0.69 -65.61 By element: Atomic # 1 Polarization: 23.60 SS G_CDS: 0.55 Total: 24.15 kcal Atomic # 6 Polarization: 3.71 SS G_CDS: 7.05 Total: 10.76 kcal Atomic # 7 Polarization: -99.26 SS G_CDS: -8.65 Total: -107.91 kcal Atomic # 8 Polarization: -35.73 SS G_CDS: -1.67 Total: -37.40 kcal Atomic # 14 Polarization: 42.75 SS G_CDS: 2.03 Total: 44.78 kcal Total: -64.92 -0.69 -65.61 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001413863150.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.215 kcal (2) G-P(sol) polarization free energy of solvation -64.924 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -80.139 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.687 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.612 kcal (6) G-S(sol) free energy of system = (1) + (5) -80.826 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds