Wall clock time and date at job start Sat Apr 11 2020 05:49:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52992 * 109.47318 * 2 1 4 4 C 1.50697 * 109.47209 * 179.97438 * 3 2 1 5 5 O 1.21277 * 120.00322 * 0.02562 * 4 3 2 6 6 N 1.34781 * 119.99980 * 179.97438 * 4 3 2 7 7 C 1.46502 * 120.00110 * 179.97438 * 6 4 3 8 8 C 1.52999 * 109.47050 * 180.02562 * 7 6 4 9 9 H 1.08991 * 110.27788 * 307.09743 * 8 7 6 10 10 C 1.54602 * 110.30492 * 69.29129 * 8 7 6 11 11 C 1.54934 * 102.91912 * 140.87101 * 10 8 7 12 12 N 1.48525 * 103.22880 * 322.58438 * 11 10 8 13 13 C 1.46899 * 111.00147 * 159.72153 * 12 11 10 14 14 C 1.50707 * 109.47176 * 52.60521 * 13 12 11 15 15 O 1.21283 * 119.99871 * 359.97438 * 14 13 12 16 16 N 1.34780 * 120.00018 * 180.02562 * 14 13 12 17 17 C 1.46497 * 120.00033 * 359.97438 * 16 14 13 18 18 C 1.53000 * 109.47231 * 270.00095 * 17 16 14 19 19 C 1.46497 * 119.99807 * 179.97438 * 16 14 13 20 20 C 1.50694 * 109.47115 * 89.99947 * 19 16 14 21 21 H 1.08000 * 120.00563 * 359.97438 * 20 19 16 22 22 C 1.37885 * 119.99902 * 180.02562 * 20 19 16 23 23 N 1.31516 * 119.99913 * 359.97438 * 22 20 19 24 24 Si 1.86798 * 119.99766 * 179.97438 * 22 20 19 25 25 H 1.48500 * 109.47353 * 269.99586 * 24 22 20 26 26 H 1.48501 * 109.47293 * 30.00037 * 24 22 20 27 27 H 1.48504 * 109.46680 * 149.99835 * 24 22 20 28 28 C 1.47904 * 105.82327 * 39.20663 * 12 11 10 29 29 H 1.09004 * 109.46898 * 179.97438 * 1 2 3 30 30 H 1.09004 * 109.47091 * 299.99697 * 1 2 3 31 31 H 1.08997 * 109.47223 * 60.00159 * 1 2 3 32 32 H 1.09004 * 109.47091 * 240.00303 * 2 1 3 33 33 H 1.08998 * 109.47307 * 120.00622 * 2 1 3 34 34 H 1.09004 * 109.46793 * 60.00120 * 3 2 1 35 35 H 1.08998 * 109.47439 * 300.00541 * 3 2 1 36 36 H 0.97001 * 120.00176 * 0.02562 * 6 4 3 37 37 H 1.09000 * 109.46635 * 60.01182 * 7 6 4 38 38 H 1.08991 * 109.47365 * 300.00714 * 7 6 4 39 39 H 1.09004 * 110.72301 * 259.22613 * 10 8 7 40 40 H 1.08994 * 110.72440 * 22.50855 * 10 8 7 41 41 H 1.09000 * 110.66888 * 204.14889 * 11 10 8 42 42 H 1.08998 * 110.66714 * 81.02051 * 11 10 8 43 43 H 1.09000 * 109.47591 * 292.60157 * 13 12 11 44 44 H 1.09008 * 109.47326 * 172.60093 * 13 12 11 45 45 H 1.09004 * 109.47352 * 30.00015 * 17 16 14 46 46 H 1.08995 * 109.47003 * 149.99929 * 17 16 14 47 47 H 1.09001 * 109.46999 * 179.97438 * 18 17 16 48 48 H 1.08994 * 109.47064 * 300.00194 * 18 17 16 49 49 H 1.09000 * 109.47180 * 60.00481 * 18 17 16 50 50 H 1.09007 * 109.47078 * 329.99586 * 19 16 14 51 51 H 1.09003 * 109.46733 * 210.00309 * 19 16 14 52 52 H 0.97001 * 119.99646 * 179.97438 * 23 22 20 53 53 H 1.09006 * 109.91356 * 94.02245 * 28 12 11 54 54 H 1.08995 * 109.91618 * 215.31690 * 28 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 3.5470 1.4424 0.0006 5 8 4.1534 0.3921 0.0006 6 7 4.2209 2.6096 0.0002 7 6 5.6860 2.6096 0.0014 8 6 6.1959 4.0521 0.0013 9 1 5.7411 4.6135 -0.8147 10 6 5.8902 4.7293 1.3571 11 6 7.1640 5.5718 1.6184 12 7 8.2561 4.7040 1.1084 13 6 9.4642 5.4900 0.8246 14 6 9.8288 6.3065 2.0378 15 8 9.1488 6.2405 3.0399 16 7 10.9098 7.1109 2.0087 17 6 11.7308 7.1911 0.7980 18 6 12.8362 6.1350 0.8605 19 6 11.2639 7.9050 3.1877 20 6 12.1925 7.1097 4.0687 21 1 12.4889 6.1122 3.7795 22 6 12.6628 7.6550 5.2445 23 7 12.3014 8.8694 5.5970 24 14 13.8133 6.6688 6.3369 25 1 13.0165 5.8809 7.3113 26 1 14.6226 5.7475 5.4993 27 1 14.7154 7.5941 7.0684 28 6 7.7306 4.0763 -0.1234 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3633 0.5138 0.8900 31 1 -0.3633 0.5138 -0.8900 32 1 1.8934 -0.5138 -0.8900 33 1 1.8934 -0.5139 0.8899 34 1 1.6767 1.9562 0.8900 35 1 1.6767 1.9563 -0.8899 36 1 3.7360 3.4497 -0.0001 37 1 6.0499 2.0952 -0.8880 38 1 6.0486 2.0965 0.8920 39 1 5.0127 5.3711 1.2784 40 1 5.7544 3.9826 2.1393 41 1 7.2885 5.7603 2.6847 42 1 7.1261 6.5089 1.0629 43 1 9.2753 6.1554 -0.0178 44 1 10.2861 4.8173 0.5791 45 1 11.1062 7.0119 -0.0772 46 1 12.1788 8.1822 0.7278 47 1 13.4467 6.1944 -0.0406 48 1 13.4608 6.3142 1.7355 49 1 12.3882 5.1438 0.9305 50 1 10.3596 8.1533 3.7435 51 1 11.7598 8.8229 2.8720 52 1 12.6320 9.2528 6.4244 53 1 8.0232 4.6642 -0.9935 54 1 8.1120 3.0593 -0.2137 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001437699209.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:49:22 Heat of formation + Delta-G solvation = -103.970314 kcal Electronic energy + Delta-G solvation = -29747.568566 eV Core-core repulsion = 25717.816478 eV Total energy + Delta-G solvation = -4029.752088 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 339.231 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -41.22991 -40.72040 -39.43325 -36.98197 -36.07933 -35.23262 -34.86911 -33.22436 -31.51028 -30.63142 -29.66089 -28.95209 -27.57873 -25.59276 -24.51200 -24.00883 -22.79570 -22.27526 -21.51821 -20.84462 -19.86252 -18.69881 -18.05243 -17.95382 -17.55751 -16.99338 -16.91117 -16.56651 -16.33117 -16.03744 -15.72907 -15.38900 -14.96618 -14.88451 -14.61100 -14.45842 -14.30141 -14.11378 -13.97426 -13.77875 -13.49934 -13.37429 -13.16865 -13.05745 -12.91161 -12.78783 -12.70171 -12.65205 -12.56247 -12.37406 -12.18396 -12.09614 -12.01498 -11.88913 -11.71618 -11.61738 -11.60983 -11.53468 -10.85473 -10.63163 -10.36811 -10.05859 -9.43512 -9.28520 -8.21237 -6.33859 1.34728 1.37937 1.46885 1.68712 1.84993 2.21561 2.30911 2.42115 3.08205 3.10839 3.55723 3.59757 3.81701 3.84495 3.89114 4.05419 4.10754 4.13899 4.24974 4.35525 4.38430 4.43728 4.48396 4.55445 4.58290 4.65098 4.68535 4.73018 4.78486 4.79496 4.87303 4.92933 4.94280 4.95337 5.02935 5.06967 5.10552 5.23850 5.23944 5.27077 5.28738 5.29397 5.44825 5.51330 5.51526 5.62561 5.87100 5.93887 6.05129 6.09528 6.60107 6.73378 6.84076 7.31075 7.31322 7.54759 8.85662 Molecular weight = 339.23amu Principal moments of inertia in cm(-1) A = 0.019137 B = 0.001859 C = 0.001792 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1462.804980 B =15057.989473 C =15625.336740 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.112 4.112 3 C -0.133 4.133 4 C 0.503 3.497 5 O -0.594 6.594 6 N -0.718 5.718 7 C 0.135 3.865 8 C -0.093 4.093 9 H 0.111 0.889 10 C -0.112 4.112 11 C 0.034 3.966 12 N -0.526 5.526 13 C 0.043 3.957 14 C 0.494 3.506 15 O -0.579 6.579 16 N -0.605 5.605 17 C 0.105 3.895 18 C -0.164 4.164 19 C 0.263 3.737 20 C -0.532 4.532 21 H 0.053 0.947 22 C 0.007 3.993 23 N -0.928 5.928 24 Si 0.961 3.039 25 H -0.283 1.283 26 H -0.263 1.263 27 H -0.275 1.275 28 C 0.041 3.959 29 H 0.055 0.945 30 H 0.063 0.937 31 H 0.067 0.933 32 H 0.053 0.947 33 H 0.047 0.953 34 H 0.114 0.886 35 H 0.120 0.880 36 H 0.417 0.583 37 H 0.066 0.934 38 H 0.046 0.954 39 H 0.096 0.904 40 H 0.060 0.940 41 H 0.069 0.931 42 H 0.039 0.961 43 H 0.090 0.910 44 H 0.115 0.885 45 H 0.105 0.895 46 H 0.076 0.924 47 H 0.092 0.908 48 H 0.037 0.963 49 H 0.051 0.949 50 H -0.004 1.004 51 H 0.021 0.979 52 H 0.265 0.735 53 H 0.072 0.928 54 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.902 -9.406 -20.303 29.291 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.150 4.150 3 C -0.173 4.173 4 C 0.291 3.709 5 O -0.475 6.475 6 N -0.370 5.370 7 C 0.011 3.989 8 C -0.113 4.113 9 H 0.129 0.871 10 C -0.150 4.150 11 C -0.094 4.094 12 N -0.251 5.251 13 C -0.088 4.088 14 C 0.283 3.717 15 O -0.459 6.459 16 N -0.337 5.337 17 C -0.018 4.018 18 C -0.222 4.222 19 C 0.142 3.858 20 C -0.571 4.571 21 H 0.071 0.929 22 C -0.192 4.192 23 N -0.569 5.569 24 Si 0.786 3.214 25 H -0.210 1.210 26 H -0.187 1.187 27 H -0.200 1.200 28 C -0.086 4.086 29 H 0.074 0.926 30 H 0.082 0.918 31 H 0.086 0.914 32 H 0.072 0.928 33 H 0.066 0.934 34 H 0.132 0.868 35 H 0.139 0.861 36 H 0.254 0.746 37 H 0.085 0.915 38 H 0.064 0.936 39 H 0.114 0.886 40 H 0.079 0.921 41 H 0.087 0.913 42 H 0.058 0.942 43 H 0.108 0.892 44 H 0.133 0.867 45 H 0.123 0.877 46 H 0.094 0.906 47 H 0.111 0.889 48 H 0.056 0.944 49 H 0.070 0.930 50 H 0.014 0.986 51 H 0.039 0.961 52 H 0.074 0.926 53 H 0.090 0.910 54 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges -18.604 -10.403 -19.285 28.745 hybrid contribution 0.735 0.781 0.819 1.349 sum -17.870 -9.622 -18.466 27.439 Atomic orbital electron populations 1.21760 0.93701 1.02291 1.02774 1.21264 0.96716 0.95194 1.01834 1.21762 0.88861 0.99988 1.06654 1.21472 0.91859 0.83039 0.74531 1.90698 1.71846 1.33240 1.51683 1.45960 1.07119 1.09179 1.74772 1.21296 0.80034 0.96275 1.01326 1.22165 0.95279 0.94962 0.98845 0.87063 1.22592 0.97063 0.98769 0.96562 1.23316 0.90419 0.94230 1.01388 1.64580 1.03783 1.29405 1.27362 1.22245 0.96014 0.96505 0.94026 1.21158 0.80419 0.79962 0.90169 1.90596 1.52691 1.66334 1.36247 1.48292 1.26600 1.43325 1.15458 1.21737 0.93313 1.00615 0.86098 1.22159 0.98949 0.98552 1.02537 1.18701 0.93915 0.90189 0.83007 1.21703 1.27946 1.01299 1.06136 0.92879 1.25804 0.98358 0.96063 0.98936 1.70045 1.46113 1.16199 1.24503 0.85509 0.78608 0.78542 0.78717 1.20953 1.18750 1.19973 1.22976 0.93799 1.00911 0.90955 0.92586 0.91820 0.91431 0.92844 0.93366 0.86788 0.86146 0.74641 0.91537 0.93570 0.88602 0.92130 0.91307 0.94250 0.89241 0.86668 0.87724 0.90565 0.88926 0.94413 0.93039 0.98569 0.96063 0.92570 0.90997 0.89806 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.24 9.91 71.98 0.71 -0.52 16 2 C -0.11 -1.48 5.22 30.59 0.16 -1.33 16 3 C -0.13 -1.30 5.70 29.84 0.17 -1.13 16 4 C 0.50 9.02 7.83 87.66 0.69 9.70 16 5 O -0.59 -16.86 15.98 -3.02 -0.05 -16.91 16 6 N -0.72 -9.62 5.43 -463.07 -2.51 -12.14 16 7 C 0.13 2.28 4.76 86.38 0.41 2.69 16 8 C -0.09 -1.36 3.03 -9.91 -0.03 -1.39 16 9 H 0.11 1.02 8.14 -2.39 -0.02 1.00 16 10 C -0.11 -2.15 6.41 31.80 0.20 -1.95 16 11 C 0.03 0.97 5.30 86.65 0.46 1.42 16 12 N -0.53 -14.64 5.26 -887.57 -4.67 -19.31 16 13 C 0.04 1.19 4.07 85.56 0.35 1.54 16 14 C 0.49 20.28 7.38 87.66 0.65 20.93 16 15 O -0.58 -29.63 13.10 -3.04 -0.04 -29.67 16 16 N -0.60 -25.20 2.46 -826.15 -2.03 -27.23 16 17 C 0.10 3.06 5.98 86.38 0.52 3.58 16 18 C -0.16 -4.62 10.24 71.98 0.74 -3.88 16 19 C 0.26 14.18 5.20 85.63 0.45 14.62 16 20 C -0.53 -30.80 8.92 25.60 0.23 -30.58 16 21 H 0.05 3.07 7.42 -2.91 -0.02 3.04 16 22 C 0.01 0.41 5.46 84.66 0.46 0.87 16 23 N -0.93 -56.59 13.29 21.45 0.28 -56.30 16 24 Si 0.96 45.83 29.54 68.60 2.03 47.86 16 25 H -0.28 -13.61 7.11 99.48 0.71 -12.91 16 26 H -0.26 -11.97 7.11 99.48 0.71 -11.26 16 27 H -0.27 -12.49 7.11 99.48 0.71 -11.79 16 28 C 0.04 0.75 6.36 86.44 0.55 1.30 16 29 H 0.06 0.49 8.14 -2.38 -0.02 0.47 16 30 H 0.06 0.44 8.14 -2.38 -0.02 0.42 16 31 H 0.07 0.40 8.14 -2.39 -0.02 0.38 16 32 H 0.05 0.86 8.10 -2.38 -0.02 0.84 16 33 H 0.05 0.83 8.10 -2.39 -0.02 0.81 16 34 H 0.11 0.69 8.14 -2.38 -0.02 0.67 16 35 H 0.12 0.54 8.14 -2.39 -0.02 0.52 16 36 H 0.42 2.81 8.41 -92.71 -0.78 2.03 16 37 H 0.07 1.16 8.14 -2.39 -0.02 1.14 16 38 H 0.05 1.06 7.99 -2.39 -0.02 1.04 16 39 H 0.10 1.32 8.14 -2.38 -0.02 1.31 16 40 H 0.06 1.38 7.76 -2.39 -0.02 1.36 16 41 H 0.07 2.66 5.97 -2.39 -0.01 2.65 16 42 H 0.04 1.06 8.02 -2.39 -0.02 1.04 16 43 H 0.09 1.88 7.07 -2.39 -0.02 1.86 16 44 H 0.12 2.85 7.19 -2.38 -0.02 2.83 16 45 H 0.10 2.14 6.44 -2.39 -0.02 2.12 16 46 H 0.08 2.21 7.89 -2.39 -0.02 2.19 16 47 H 0.09 1.88 8.14 -2.39 -0.02 1.86 16 48 H 0.04 1.35 7.26 -2.39 -0.02 1.33 16 49 H 0.05 1.42 7.22 -2.39 -0.02 1.40 16 50 H 0.00 -0.24 7.42 -2.38 -0.02 -0.25 16 51 H 0.02 1.17 7.89 -2.39 -0.02 1.15 16 52 H 0.27 15.22 8.31 -92.71 -0.77 14.45 16 53 H 0.07 0.99 7.57 -2.38 -0.02 0.97 16 54 H 0.08 1.52 7.68 -2.39 -0.02 1.50 16 Total: -1.00 -83.41 425.15 -0.19 -83.60 By element: Atomic # 1 Polarization: 14.11 SS G_CDS: 0.09 Total: 14.20 kcal Atomic # 6 Polarization: 9.19 SS G_CDS: 6.71 Total: 15.90 kcal Atomic # 7 Polarization: -106.05 SS G_CDS: -8.93 Total: -114.98 kcal Atomic # 8 Polarization: -46.49 SS G_CDS: -0.09 Total: -46.58 kcal Atomic # 14 Polarization: 45.83 SS G_CDS: 2.03 Total: 47.86 kcal Total: -83.41 -0.19 -83.60 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001437699209.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.373 kcal (2) G-P(sol) polarization free energy of solvation -83.406 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -103.780 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.191 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.597 kcal (6) G-S(sol) free energy of system = (1) + (5) -103.970 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds