Wall clock time and date at job start Sat Apr 11 2020 05:49:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53009 * 1 3 3 C 1.52993 * 109.46759 * 2 1 4 4 C 1.50702 * 109.47138 * 180.02562 * 3 2 1 5 5 O 1.21285 * 119.99797 * 359.97438 * 4 3 2 6 6 N 1.34778 * 120.00290 * 179.97438 * 4 3 2 7 7 C 1.46496 * 119.99905 * 179.97438 * 6 4 3 8 8 C 1.53000 * 110.35451 * 57.85848 * 7 6 4 9 9 C 1.54595 * 110.31262 * 295.71517 * 7 6 4 10 10 C 1.54937 * 102.92229 * 263.04153 * 9 7 6 11 11 N 1.48527 * 103.22853 * 322.58454 * 10 9 7 12 12 C 1.46894 * 111.00222 * 159.71790 * 11 10 9 13 13 C 1.50708 * 109.47017 * 52.60503 * 12 11 10 14 14 O 1.21281 * 119.99944 * 359.97438 * 13 12 11 15 15 N 1.34774 * 120.00400 * 180.02562 * 13 12 11 16 16 C 1.46512 * 119.99637 * 359.97438 * 15 13 12 17 17 C 1.52991 * 109.47033 * 270.00069 * 16 15 13 18 18 C 1.46491 * 120.00401 * 179.97438 * 15 13 12 19 19 C 1.50702 * 109.46957 * 89.99834 * 18 15 13 20 20 H 1.08002 * 120.00299 * 0.02562 * 19 18 15 21 21 C 1.37884 * 119.99942 * 179.72213 * 19 18 15 22 22 N 1.31514 * 119.99698 * 0.28408 * 21 19 18 23 23 Si 1.86794 * 119.99837 * 180.27476 * 21 19 18 24 24 H 1.48504 * 109.47196 * 60.00645 * 23 21 19 25 25 H 1.48504 * 109.46887 * 180.02562 * 23 21 19 26 26 H 1.48502 * 109.47679 * 300.00280 * 23 21 19 27 27 C 1.47899 * 105.82004 * 39.20800 * 11 10 9 28 28 H 1.09000 * 109.47054 * 300.00059 * 1 2 3 29 29 H 1.09000 * 109.46744 * 60.00539 * 1 2 3 30 30 H 1.08996 * 109.46782 * 180.02562 * 1 2 3 31 31 H 1.09000 * 109.47054 * 239.99941 * 2 1 3 32 32 H 1.09000 * 109.46744 * 119.99460 * 2 1 3 33 33 H 1.08998 * 109.48043 * 59.99797 * 3 2 1 34 34 H 1.09004 * 109.47432 * 299.99548 * 3 2 1 35 35 H 0.96997 * 119.99862 * 359.97438 * 6 4 3 36 36 H 1.08999 * 109.47542 * 182.13858 * 8 7 6 37 37 H 1.09002 * 109.47178 * 302.13935 * 8 7 6 38 38 H 1.09001 * 109.46848 * 62.13651 * 8 7 6 39 39 H 1.08999 * 110.72204 * 21.39938 * 9 7 6 40 40 H 1.08994 * 110.72614 * 144.50312 * 9 7 6 41 41 H 1.08999 * 110.66388 * 204.14570 * 10 9 7 42 42 H 1.08998 * 110.66608 * 81.02247 * 10 9 7 43 43 H 1.08999 * 109.47292 * 292.60665 * 12 11 10 44 44 H 1.08998 * 109.47664 * 172.60335 * 12 11 10 45 45 H 1.09002 * 109.46695 * 30.00158 * 16 15 13 46 46 H 1.09003 * 109.46868 * 149.99786 * 16 15 13 47 47 H 1.09003 * 109.47524 * 60.00120 * 17 16 15 48 48 H 1.09007 * 109.47128 * 179.97438 * 17 16 15 49 49 H 1.09001 * 109.47311 * 300.00158 * 17 16 15 50 50 H 1.09004 * 109.47166 * 330.00100 * 18 15 13 51 51 H 1.08994 * 109.47507 * 209.99806 * 18 15 13 52 52 H 0.97005 * 119.99651 * 179.97438 * 22 21 19 53 53 H 1.08996 * 109.92331 * 94.02051 * 27 11 10 54 54 H 1.09006 * 109.91888 * 215.12156 * 27 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5470 1.4426 -0.0006 5 8 4.1535 0.3922 -0.0006 6 7 4.2209 2.6098 -0.0013 7 6 5.6858 2.6098 -0.0013 8 6 6.2180 1.8460 -1.2156 9 6 6.2225 1.9814 1.3052 10 6 6.5144 3.2190 2.1905 11 7 7.0368 4.2151 1.2206 12 6 6.9227 5.5791 1.7538 13 6 7.5605 5.6402 3.1179 14 8 8.0603 4.6453 3.5987 15 7 7.5744 6.8002 3.8040 16 6 6.9701 8.0019 3.2234 17 6 8.0232 8.7631 2.4158 18 6 8.1938 6.8594 5.1302 19 6 9.6508 7.2175 4.9885 20 1 10.0731 7.3846 4.0086 21 6 10.4434 7.3378 6.1104 22 7 9.9291 7.1346 7.3036 23 14 12.2475 7.7891 5.9352 24 1 12.3646 9.1116 5.2698 25 1 12.8743 7.8539 7.2800 26 1 12.9381 6.7603 5.1168 27 6 6.2203 4.0541 -0.0021 28 1 -0.3633 0.5138 0.8900 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 -1.0276 0.0005 31 1 1.8934 -0.5138 -0.8900 32 1 1.8934 -0.5138 0.8900 33 1 1.6767 1.9564 0.8899 34 1 1.6767 1.9563 -0.8900 35 1 3.7358 3.4498 -0.0017 36 1 7.3071 1.8223 -1.1812 37 1 5.8318 0.8268 -1.2015 38 1 5.8940 2.3447 -2.1290 39 1 5.4663 1.3466 1.7669 40 1 7.1348 1.4160 1.1150 41 1 7.2665 2.9843 2.9438 42 1 5.5993 3.5813 2.6589 43 1 5.8703 5.8517 1.8322 44 1 7.4292 6.2745 1.0845 45 1 6.1475 7.7147 2.5684 46 1 6.5926 8.6408 4.0219 47 1 8.4006 8.1242 1.6174 48 1 7.5735 9.6570 1.9835 49 1 8.8458 9.0502 3.0708 50 1 8.1040 5.8882 5.6169 51 1 7.6908 7.6156 5.7327 52 1 10.4868 7.2189 8.0928 53 1 5.3882 4.7579 0.0117 54 1 6.8362 4.2247 -0.8851 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001446512169.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:49:30 Heat of formation + Delta-G solvation = -93.490480 kcal Electronic energy + Delta-G solvation = -30793.594445 eV Core-core repulsion = 26764.296797 eV Total energy + Delta-G solvation = -4029.297648 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 339.231 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -41.66540 -40.74538 -39.21321 -36.97687 -35.69241 -35.18549 -34.83091 -32.77413 -31.50127 -30.86264 -29.70908 -28.59649 -28.13253 -26.05019 -24.50328 -23.98921 -23.37452 -22.49210 -21.27890 -20.59833 -19.83059 -18.69172 -18.21674 -17.87450 -17.48333 -16.88928 -16.80743 -16.46429 -16.17699 -16.09394 -15.50876 -15.11109 -15.03931 -14.73904 -14.56769 -14.39651 -14.19715 -14.04742 -13.95196 -13.77711 -13.58308 -13.28235 -13.16979 -13.11081 -12.96321 -12.83590 -12.69299 -12.60191 -12.57313 -12.38369 -12.33092 -12.11455 -12.01205 -11.98238 -11.91105 -11.72392 -11.60957 -11.58523 -10.62276 -10.61275 -10.40542 -10.02798 -9.45342 -9.33250 -8.20347 -6.33086 1.35447 1.39984 1.46633 1.71600 1.85817 2.13382 2.31639 2.43333 3.05542 3.09259 3.41324 3.58766 3.81743 3.85951 3.93916 4.03913 4.11449 4.14492 4.19867 4.28163 4.35779 4.42745 4.49272 4.55849 4.60862 4.67829 4.72465 4.77327 4.79510 4.81419 4.87867 4.92034 4.94005 4.97171 5.05103 5.08257 5.08844 5.20544 5.24644 5.25362 5.29077 5.32492 5.46352 5.54242 5.56858 5.63119 5.81015 5.89847 5.99154 6.09961 6.63331 6.74118 6.84923 7.32096 7.35127 7.55775 8.86450 Molecular weight = 339.23amu Principal moments of inertia in cm(-1) A = 0.019272 B = 0.002217 C = 0.002215 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1452.569136 B =12626.657038 C =12639.848936 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.110 4.110 3 C -0.134 4.134 4 C 0.506 3.494 5 O -0.576 6.576 6 N -0.712 5.712 7 C 0.170 3.830 8 C -0.149 4.149 9 C -0.117 4.117 10 C 0.043 3.957 11 N -0.517 5.517 12 C 0.043 3.957 13 C 0.493 3.507 14 O -0.580 6.580 15 N -0.604 5.604 16 C 0.104 3.896 17 C -0.164 4.164 18 C 0.263 3.737 19 C -0.530 4.530 20 H 0.055 0.945 21 C 0.005 3.995 22 N -0.930 5.930 23 Si 0.962 3.038 24 H -0.259 1.259 25 H -0.281 1.281 26 H -0.280 1.280 27 C 0.041 3.959 28 H 0.061 0.939 29 H 0.067 0.933 30 H 0.055 0.945 31 H 0.054 0.946 32 H 0.047 0.953 33 H 0.110 0.890 34 H 0.120 0.880 35 H 0.414 0.586 36 H 0.064 0.936 37 H 0.058 0.942 38 H 0.073 0.927 39 H 0.063 0.937 40 H 0.066 0.934 41 H 0.071 0.929 42 H 0.036 0.964 43 H 0.093 0.907 44 H 0.124 0.876 45 H 0.107 0.893 46 H 0.074 0.926 47 H 0.053 0.947 48 H 0.092 0.908 49 H 0.036 0.964 50 H -0.006 1.006 51 H 0.021 0.979 52 H 0.265 0.735 53 H 0.082 0.918 54 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.221 -2.775 -21.058 29.326 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.148 4.148 3 C -0.173 4.173 4 C 0.294 3.706 5 O -0.455 6.455 6 N -0.366 5.366 7 C 0.083 3.917 8 C -0.207 4.207 9 C -0.156 4.156 10 C -0.084 4.084 11 N -0.242 5.242 12 C -0.088 4.088 13 C 0.281 3.719 14 O -0.460 6.460 15 N -0.336 5.336 16 C -0.018 4.018 17 C -0.222 4.222 18 C 0.142 3.858 19 C -0.569 4.569 20 H 0.073 0.927 21 C -0.194 4.194 22 N -0.570 5.570 23 Si 0.787 3.213 24 H -0.184 1.184 25 H -0.206 1.206 26 H -0.206 1.206 27 C -0.086 4.086 28 H 0.080 0.920 29 H 0.086 0.914 30 H 0.074 0.926 31 H 0.073 0.927 32 H 0.066 0.934 33 H 0.128 0.872 34 H 0.138 0.862 35 H 0.252 0.748 36 H 0.083 0.917 37 H 0.077 0.923 38 H 0.092 0.908 39 H 0.082 0.918 40 H 0.085 0.915 41 H 0.089 0.911 42 H 0.054 0.946 43 H 0.110 0.890 44 H 0.142 0.858 45 H 0.125 0.875 46 H 0.093 0.907 47 H 0.072 0.928 48 H 0.111 0.889 49 H 0.055 0.945 50 H 0.012 0.988 51 H 0.039 0.961 52 H 0.074 0.926 53 H 0.100 0.900 54 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges -18.949 -4.060 -20.716 28.367 hybrid contribution 0.442 0.468 1.116 1.288 sum -18.508 -3.592 -19.600 27.195 Atomic orbital electron populations 1.21760 0.93842 1.02248 1.02696 1.21244 0.96594 0.95121 1.01851 1.21764 0.89164 0.99981 1.06412 1.21375 0.91571 0.83162 0.74448 1.90676 1.71347 1.32925 1.50588 1.46180 1.05817 1.09321 1.75255 1.20988 0.80123 0.95492 0.95084 1.22091 1.01198 1.01028 0.96397 1.22774 1.00721 0.96624 0.95505 1.23230 0.97776 0.92012 0.95411 1.64631 1.51971 1.02707 1.04874 1.22295 1.01215 0.92761 0.92500 1.21190 0.80083 0.82653 0.87946 1.90611 1.48080 1.36164 1.71177 1.48289 1.56538 1.09952 1.18854 1.21756 0.96014 0.85847 0.98180 1.22162 0.99472 1.00920 0.99643 1.18688 0.92213 0.95128 0.79796 1.21665 0.95704 1.46744 0.92781 0.92700 1.25836 1.03270 0.95407 0.94873 1.70046 1.37995 1.50577 0.98421 0.85546 0.79336 0.79078 0.77327 1.18389 1.20572 1.20597 1.23294 0.97022 0.94228 0.94071 0.91996 0.91400 0.92610 0.92672 0.93447 0.87211 0.86221 0.74831 0.91659 0.92286 0.90783 0.91848 0.91490 0.91100 0.94606 0.88951 0.85800 0.87498 0.90737 0.92761 0.88892 0.94514 0.98829 0.96118 0.92604 0.90045 0.87505 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.36 9.91 71.99 0.71 -0.65 16 2 C -0.11 -1.52 5.22 30.59 0.16 -1.36 16 3 C -0.13 -1.40 5.70 29.85 0.17 -1.23 16 4 C 0.51 9.20 7.02 87.66 0.62 9.81 16 5 O -0.58 -15.70 12.87 -3.05 -0.04 -15.74 16 6 N -0.71 -10.45 5.15 -418.94 -2.16 -12.61 16 7 C 0.17 3.33 0.94 4.48 0.00 3.34 16 8 C -0.15 -2.94 8.15 71.98 0.59 -2.35 16 9 C -0.12 -3.22 5.85 31.80 0.19 -3.03 16 10 C 0.04 1.36 5.30 86.65 0.46 1.82 16 11 N -0.52 -14.11 5.26 -887.59 -4.67 -18.78 16 12 C 0.04 1.12 4.07 85.56 0.35 1.47 16 13 C 0.49 19.88 7.38 87.66 0.65 20.53 16 14 O -0.58 -29.80 13.10 -3.03 -0.04 -29.84 16 15 N -0.60 -24.71 2.46 -826.15 -2.03 -26.74 16 16 C 0.10 2.91 5.98 86.37 0.52 3.43 16 17 C -0.16 -4.35 10.24 71.98 0.74 -3.61 16 18 C 0.26 14.12 5.20 85.64 0.45 14.56 16 19 C -0.53 -30.45 8.92 25.60 0.23 -30.22 16 20 H 0.05 3.12 7.42 -2.91 -0.02 3.10 16 21 C 0.00 0.27 5.46 84.66 0.46 0.73 16 22 N -0.93 -56.86 13.29 21.45 0.28 -56.58 16 23 Si 0.96 45.57 29.54 68.60 2.03 47.60 16 24 H -0.26 -11.46 7.11 99.48 0.71 -10.75 16 25 H -0.28 -12.90 7.11 99.48 0.71 -12.19 16 26 H -0.28 -13.38 7.11 99.48 0.71 -12.67 16 27 C 0.04 0.72 6.15 86.45 0.53 1.25 16 28 H 0.06 0.49 8.14 -2.39 -0.02 0.48 16 29 H 0.07 0.45 8.14 -2.39 -0.02 0.43 16 30 H 0.05 0.53 8.14 -2.39 -0.02 0.51 16 31 H 0.05 0.90 8.10 -2.39 -0.02 0.88 16 32 H 0.05 0.85 8.10 -2.39 -0.02 0.84 16 33 H 0.11 0.81 8.14 -2.39 -0.02 0.79 16 34 H 0.12 0.62 8.14 -2.38 -0.02 0.60 16 35 H 0.41 3.23 8.09 -92.71 -0.75 2.48 16 36 H 0.06 1.33 8.11 -2.39 -0.02 1.31 16 37 H 0.06 1.45 6.04 -2.39 -0.01 1.43 16 38 H 0.07 1.13 8.14 -2.39 -0.02 1.11 16 39 H 0.06 1.88 6.81 -2.39 -0.02 1.86 16 40 H 0.07 2.01 7.84 -2.39 -0.02 2.00 16 41 H 0.07 2.94 5.97 -2.39 -0.01 2.93 16 42 H 0.04 1.08 8.02 -2.39 -0.02 1.06 16 43 H 0.09 1.74 7.07 -2.39 -0.02 1.72 16 44 H 0.12 2.71 7.19 -2.39 -0.02 2.69 16 45 H 0.11 1.99 6.44 -2.39 -0.02 1.97 16 46 H 0.07 2.09 7.89 -2.39 -0.02 2.07 16 47 H 0.05 1.38 7.22 -2.39 -0.02 1.36 16 48 H 0.09 1.74 8.14 -2.38 -0.02 1.72 16 49 H 0.04 1.27 7.26 -2.39 -0.02 1.25 16 50 H -0.01 -0.40 7.42 -2.38 -0.02 -0.42 16 51 H 0.02 1.13 7.89 -2.39 -0.02 1.11 16 52 H 0.27 15.30 8.31 -92.70 -0.77 14.53 16 53 H 0.08 0.89 6.89 -2.39 -0.02 0.88 16 54 H 0.11 1.62 7.69 -2.38 -0.02 1.60 16 Total: -1.00 -81.83 417.26 0.32 -81.52 By element: Atomic # 1 Polarization: 16.56 SS G_CDS: 0.13 Total: 16.69 kcal Atomic # 6 Polarization: 7.67 SS G_CDS: 6.81 Total: 14.48 kcal Atomic # 7 Polarization: -106.13 SS G_CDS: -8.57 Total: -114.70 kcal Atomic # 8 Polarization: -45.51 SS G_CDS: -0.08 Total: -45.59 kcal Atomic # 14 Polarization: 45.57 SS G_CDS: 2.03 Total: 47.60 kcal Total: -81.83 0.32 -81.52 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001446512169.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.972 kcal (2) G-P(sol) polarization free energy of solvation -81.834 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -93.806 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.316 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.519 kcal (6) G-S(sol) free energy of system = (1) + (5) -93.490 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds