Wall clock time and date at job start Sat Apr 11 2020 05:49:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53005 * 109.46930 * 2 1 4 4 H 1.09004 * 109.48811 * 54.97045 * 3 2 1 5 5 C 1.53091 * 109.48171 * 174.99769 * 3 2 1 6 6 C 1.53171 * 109.16492 * 177.59238 * 5 3 2 7 7 H 1.08998 * 109.54602 * 183.06652 * 6 5 3 8 8 C 1.50697 * 109.54602 * 62.88776 * 6 5 3 9 9 O 1.21286 * 119.99910 * 0.02562 * 8 6 5 10 10 N 1.34773 * 120.00489 * 180.02562 * 8 6 5 11 11 C 1.46495 * 120.00395 * 180.02562 * 10 8 6 12 12 C 1.53002 * 109.47335 * 180.02562 * 11 10 8 13 13 N 1.46896 * 109.47483 * 180.02562 * 12 11 10 14 14 C 1.46890 * 111.00483 * 189.99726 * 13 12 11 15 15 C 1.53237 * 109.34547 * 187.25389 * 14 13 12 16 16 N 1.47091 * 108.51705 * 306.16892 * 15 14 13 17 17 C 1.36932 * 120.87892 * 231.18398 * 16 15 14 18 18 H 1.08001 * 120.00372 * 27.11171 * 17 16 15 19 19 C 1.38807 * 120.00101 * 207.10558 * 17 16 15 20 20 N 1.31620 * 119.99670 * 16.77382 * 19 17 16 21 21 Si 1.86804 * 120.00432 * 196.77559 * 19 17 16 22 22 H 1.48500 * 109.47345 * 179.97438 * 21 19 17 23 23 H 1.48499 * 109.46847 * 299.99934 * 21 19 17 24 24 H 1.48503 * 109.46716 * 59.99650 * 21 19 17 25 25 C 1.47078 * 118.23452 * 51.45850 * 16 15 14 26 26 C 1.46903 * 111.00011 * 314.29935 * 13 12 11 27 27 C 1.53178 * 109.03452 * 303.01938 * 6 5 3 28 28 C 1.53092 * 109.16096 * 56.98240 * 27 6 5 29 29 O 1.42898 * 109.41735 * 302.38690 * 28 27 6 30 30 H 1.09003 * 109.47169 * 180.02562 * 1 2 3 31 31 H 1.09000 * 109.47432 * 299.99846 * 1 2 3 32 32 H 1.08994 * 109.47751 * 60.00070 * 1 2 3 33 33 H 1.08993 * 109.47062 * 240.00221 * 2 1 3 34 34 H 1.09001 * 109.47290 * 119.99456 * 2 1 3 35 35 H 1.09000 * 109.51913 * 57.68387 * 5 3 2 36 36 H 1.09006 * 109.57315 * 297.53222 * 5 3 2 37 37 H 0.97003 * 119.99807 * 0.02562 * 10 8 6 38 38 H 1.09002 * 109.47473 * 59.99660 * 11 10 8 39 39 H 1.09005 * 109.47005 * 299.99671 * 11 10 8 40 40 H 1.08993 * 109.47479 * 59.99416 * 12 11 10 41 41 H 1.09005 * 109.46619 * 299.99680 * 12 11 10 42 42 H 1.09001 * 109.49228 * 67.28758 * 14 13 12 43 43 H 1.09003 * 109.51225 * 307.22686 * 14 13 12 44 44 H 1.09001 * 109.63065 * 186.46335 * 15 14 13 45 45 H 1.08994 * 109.79235 * 65.97180 * 15 14 13 46 46 H 0.97004 * 119.99692 * 180.02562 * 20 19 17 47 47 H 1.08996 * 109.62966 * 68.24940 * 25 16 15 48 48 H 1.09000 * 109.62168 * 188.83416 * 25 16 15 49 49 H 1.09002 * 109.48934 * 292.70847 * 26 13 12 50 50 H 1.09007 * 109.49199 * 52.78169 * 26 13 12 51 51 H 1.09002 * 109.52197 * 176.88418 * 27 6 5 52 52 H 1.08993 * 109.52770 * 297.07700 * 27 6 5 53 53 H 1.09003 * 109.48122 * 182.40640 * 28 27 6 54 54 H 1.09001 * 109.48301 * 62.37385 * 28 27 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 1.6050 1.9820 0.8415 5 6 3.5657 1.4447 0.1258 6 6 4.0732 2.8886 0.0646 7 1 5.1627 2.8939 0.0989 8 6 3.5282 3.6647 1.2357 9 8 2.8050 3.1183 2.0416 10 7 3.8443 4.9660 1.3877 11 6 3.3149 5.7203 2.5265 12 6 3.8217 7.1626 2.4629 13 7 3.2914 7.9188 3.6051 14 6 3.5577 9.3555 3.4547 15 6 3.1543 10.0840 4.7411 16 7 1.7591 9.7396 5.0550 17 6 0.8343 10.7168 5.3095 18 1 0.9561 11.7006 4.8808 19 6 -0.2599 10.4431 6.1186 20 7 -0.2523 9.3835 6.8994 21 14 -1.7433 11.5783 6.0992 22 1 -2.7691 11.0687 7.0443 23 1 -1.3270 12.9437 6.5087 24 1 -2.3131 11.6247 4.7286 25 6 1.3854 8.3177 5.0943 26 6 1.8571 7.6591 3.7882 27 6 3.5968 3.5306 -1.2420 28 6 2.0698 3.4479 -1.3149 29 8 1.6631 2.0812 -1.2215 30 1 -0.3634 -1.0277 0.0005 31 1 -0.3634 0.5138 0.8900 32 1 -0.3634 0.5138 -0.8899 33 1 1.8933 -0.5138 -0.8899 34 1 1.8934 -0.5137 0.8900 35 1 3.9995 0.8710 -0.6932 36 1 3.8543 0.9971 1.0770 37 1 4.4224 5.4032 0.7429 38 1 3.6488 5.2581 3.4554 39 1 2.2255 5.7166 2.4899 40 1 3.4874 7.6246 1.5341 41 1 4.9112 7.1667 2.4992 42 1 2.9790 9.7471 2.6181 43 1 4.6200 9.5111 3.2665 44 1 3.2417 11.1606 4.5950 45 1 3.8017 9.7719 5.5605 46 1 -1.0171 9.1920 7.4645 47 1 1.8665 7.8360 5.9454 48 1 0.3027 8.2261 5.1818 49 1 1.3021 8.0743 2.9470 50 1 1.6862 6.5839 3.8421 51 1 3.9067 4.5753 -1.2687 52 1 4.0312 2.9992 -2.0886 53 1 1.7280 3.8649 -2.2622 54 1 1.6353 4.0136 -0.4907 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001479939620.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:49:53 Heat of formation + Delta-G solvation = -83.942540 kcal Electronic energy + Delta-G solvation = -30784.366650 eV Core-core repulsion = 26755.483031 eV Total energy + Delta-G solvation = -4028.883618 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 339.231 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -41.74957 -39.99880 -39.27802 -36.90608 -35.57885 -34.93344 -34.62889 -33.27861 -31.68222 -30.79355 -30.24508 -27.87467 -26.57400 -25.22658 -24.61490 -24.29460 -23.29578 -22.43735 -22.11950 -20.91216 -20.52501 -18.74304 -17.78468 -17.48314 -17.40754 -17.23247 -16.74527 -16.59496 -16.05854 -15.86738 -15.68212 -15.37354 -15.30329 -15.16389 -14.91780 -14.75344 -14.62207 -14.49360 -14.23706 -14.02551 -13.43172 -13.24792 -13.16152 -13.01802 -12.87883 -12.75475 -12.61670 -12.56030 -12.47560 -12.33729 -12.09971 -12.08886 -11.89363 -11.86468 -11.63682 -11.56548 -11.41813 -11.37188 -10.79734 -10.60321 -10.25122 -10.10529 -9.30889 -8.70602 -7.89425 -5.34946 1.44702 1.47489 1.54370 1.58775 2.04379 2.49181 2.84952 3.05845 3.26267 3.53052 3.65225 3.69850 3.77460 3.81147 3.92956 4.03780 4.06669 4.23998 4.26878 4.27933 4.32070 4.41924 4.43076 4.50186 4.52186 4.59190 4.60721 4.67661 4.69485 4.81446 4.84000 4.88112 4.89787 4.91448 4.94420 5.00800 5.01476 5.07128 5.10271 5.15214 5.17544 5.27342 5.34285 5.37522 5.43556 5.58943 5.64535 6.10158 6.20567 6.31277 6.35189 6.51981 7.10747 7.23583 7.81824 8.36210 9.17240 Molecular weight = 339.23amu Principal moments of inertia in cm(-1) A = 0.015004 B = 0.002277 C = 0.002099 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1865.676987 B =12293.202800 C =13337.236763 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.113 4.113 3 C 0.076 3.924 4 H 0.050 0.950 5 C -0.127 4.127 6 C -0.106 4.106 7 H 0.135 0.865 8 C 0.508 3.492 9 O -0.579 6.579 10 N -0.712 5.712 11 C 0.124 3.876 12 C 0.055 3.945 13 N -0.541 5.541 14 C 0.058 3.942 15 C 0.141 3.859 16 N -0.615 5.615 17 C -0.264 4.264 18 H 0.070 0.930 19 C -0.054 4.054 20 N -0.937 5.937 21 Si 0.970 3.030 22 H -0.295 1.295 23 H -0.273 1.273 24 H -0.278 1.278 25 C 0.186 3.814 26 C 0.047 3.953 27 C -0.138 4.138 28 C 0.050 3.950 29 O -0.392 6.392 30 H 0.068 0.932 31 H 0.038 0.962 32 H 0.051 0.949 33 H 0.079 0.921 34 H 0.080 0.920 35 H 0.098 0.902 36 H 0.072 0.928 37 H 0.417 0.583 38 H 0.058 0.942 39 H 0.049 0.951 40 H 0.049 0.951 41 H 0.103 0.897 42 H 0.028 0.972 43 H 0.102 0.898 44 H 0.063 0.937 45 H 0.016 0.984 46 H 0.250 0.750 47 H -0.003 1.003 48 H 0.054 0.946 49 H 0.020 0.980 50 H 0.076 0.924 51 H 0.100 0.900 52 H 0.105 0.895 53 H 0.111 0.889 54 H 0.023 0.977 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.049 -14.997 -21.380 29.194 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.150 4.150 3 C 0.018 3.982 4 H 0.067 0.933 5 C -0.165 4.165 6 C -0.127 4.127 7 H 0.152 0.848 8 C 0.296 3.704 9 O -0.458 6.458 10 N -0.365 5.365 11 C -0.001 4.001 12 C -0.073 4.073 13 N -0.267 5.267 14 C -0.071 4.071 15 C 0.016 3.984 16 N -0.339 5.339 17 C -0.394 4.394 18 H 0.088 0.912 19 C -0.249 4.249 20 N -0.583 5.583 21 Si 0.797 3.203 22 H -0.221 1.221 23 H -0.198 1.198 24 H -0.204 1.204 25 C 0.060 3.940 26 C -0.082 4.082 27 C -0.175 4.175 28 C -0.027 4.027 29 O -0.312 6.312 30 H 0.087 0.913 31 H 0.057 0.943 32 H 0.070 0.930 33 H 0.097 0.903 34 H 0.099 0.901 35 H 0.116 0.884 36 H 0.090 0.910 37 H 0.254 0.746 38 H 0.076 0.924 39 H 0.067 0.933 40 H 0.067 0.933 41 H 0.122 0.878 42 H 0.046 0.954 43 H 0.121 0.879 44 H 0.082 0.918 45 H 0.034 0.966 46 H 0.059 0.941 47 H 0.015 0.985 48 H 0.072 0.928 49 H 0.038 0.962 50 H 0.094 0.906 51 H 0.119 0.881 52 H 0.123 0.877 53 H 0.129 0.871 54 H 0.041 0.959 Dipole moment (debyes) X Y Z Total from point charges 12.566 -15.641 -20.409 28.620 hybrid contribution -1.291 1.237 0.169 1.796 sum 11.275 -14.404 -20.241 27.282 Atomic orbital electron populations 1.21699 0.95787 1.01953 1.01200 1.21537 0.96410 0.93903 1.03133 1.22388 0.94646 0.94599 0.86525 0.93255 1.21994 0.95676 0.95187 1.03646 1.21506 1.03668 0.95103 0.92398 0.84759 1.21295 0.79964 0.82098 0.87059 1.90690 1.38680 1.69921 1.46542 1.45804 1.51927 1.10520 1.28295 1.21254 0.97915 0.91555 0.89364 1.22246 1.01490 0.91335 0.92216 1.61922 1.15005 1.08873 1.40882 1.22476 1.01173 0.86474 0.96986 1.21171 0.84981 0.97629 0.94656 1.44437 1.05458 1.02168 1.81876 1.19516 1.02632 0.94187 1.23112 0.91215 1.25853 1.03098 0.99866 0.96119 1.70192 1.30643 1.30703 1.26810 0.85308 0.79089 0.78634 0.77228 1.22109 1.19816 1.20443 1.20685 0.98162 0.83091 0.92107 1.22730 0.87955 0.99647 0.97899 1.22203 0.95687 1.03198 0.96436 1.22712 0.95112 0.82782 1.02056 1.87869 1.79404 1.24995 1.38919 0.91341 0.94262 0.92955 0.90258 0.90124 0.88372 0.90954 0.74564 0.92395 0.93292 0.93311 0.87844 0.95416 0.87947 0.91839 0.96628 0.94105 0.98532 0.92806 0.96161 0.90582 0.88135 0.87697 0.87059 0.95889 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.84 9.81 71.98 0.71 -2.14 16 2 C -0.11 -2.02 5.64 30.60 0.17 -1.85 16 3 C 0.08 1.60 2.35 30.63 0.07 1.67 16 4 H 0.05 1.42 5.80 -2.38 -0.01 1.40 16 5 C -0.13 -2.01 4.56 30.68 0.14 -1.87 16 6 C -0.11 -1.39 3.04 -11.42 -0.03 -1.42 16 7 H 0.13 0.95 8.14 -2.39 -0.02 0.93 16 8 C 0.51 10.80 5.82 87.66 0.51 11.31 16 9 O -0.58 -18.13 13.84 -3.05 -0.04 -18.17 16 10 N -0.71 -12.53 5.44 -463.06 -2.52 -15.05 16 11 C 0.12 3.04 4.92 86.38 0.43 3.46 16 12 C 0.05 1.24 5.38 86.30 0.46 1.70 16 13 N -0.54 -17.73 4.78 -894.34 -4.27 -22.01 16 14 C 0.06 1.86 5.58 86.38 0.48 2.34 16 15 C 0.14 5.87 6.69 86.35 0.58 6.45 16 16 N -0.62 -31.91 3.03 -697.25 -2.11 -34.02 16 17 C -0.26 -14.83 9.63 84.03 0.81 -14.02 16 18 H 0.07 3.76 7.88 -2.91 -0.02 3.73 16 19 C -0.05 -3.10 4.94 84.86 0.42 -2.68 16 20 N -0.94 -57.21 11.16 21.65 0.24 -56.96 16 21 Si 0.97 45.65 29.59 68.60 2.03 47.68 16 22 H -0.29 -14.00 7.11 99.48 0.71 -13.29 16 23 H -0.27 -12.28 7.11 99.48 0.71 -11.58 16 24 H -0.28 -12.71 7.11 99.48 0.71 -12.00 16 25 C 0.19 9.46 5.44 86.50 0.47 9.93 16 26 C 0.05 1.86 5.06 86.53 0.44 2.29 16 27 C -0.14 -1.36 5.57 30.68 0.17 -1.19 16 28 C 0.05 0.84 6.62 72.01 0.48 1.31 16 29 O -0.39 -8.37 9.94 -148.98 -1.48 -9.86 16 30 H 0.07 1.05 8.14 -2.39 -0.02 1.03 16 31 H 0.04 0.84 8.14 -2.39 -0.02 0.82 16 32 H 0.05 1.07 7.82 -2.39 -0.02 1.05 16 33 H 0.08 1.21 8.14 -2.39 -0.02 1.19 16 34 H 0.08 1.33 8.14 -2.39 -0.02 1.31 16 35 H 0.10 1.14 8.14 -2.39 -0.02 1.12 16 36 H 0.07 1.27 8.03 -2.38 -0.02 1.25 16 37 H 0.42 4.06 7.89 -92.71 -0.73 3.32 16 38 H 0.06 1.68 8.14 -2.39 -0.02 1.66 16 39 H 0.05 1.46 6.18 -2.38 -0.01 1.45 16 40 H 0.05 0.99 8.08 -2.39 -0.02 0.97 16 41 H 0.10 1.82 8.14 -2.38 -0.02 1.80 16 42 H 0.03 0.91 8.14 -2.39 -0.02 0.89 16 43 H 0.10 2.52 8.11 -2.39 -0.02 2.50 16 44 H 0.06 2.50 7.95 -2.39 -0.02 2.48 16 45 H 0.02 0.68 8.14 -2.39 -0.02 0.66 16 46 H 0.25 14.80 8.31 -92.71 -0.77 14.03 16 47 H 0.00 -0.19 8.14 -2.39 -0.02 -0.21 16 48 H 0.05 3.09 6.13 -2.39 -0.01 3.07 16 49 H 0.02 0.82 8.14 -2.39 -0.02 0.80 16 50 H 0.08 2.86 5.73 -2.38 -0.01 2.84 16 51 H 0.10 0.55 7.52 -2.39 -0.02 0.53 16 52 H 0.10 0.71 8.14 -2.39 -0.02 0.69 16 53 H 0.11 1.45 8.14 -2.39 -0.02 1.43 16 54 H 0.02 0.50 7.38 -2.39 -0.02 0.48 16 Total: -1.00 -75.00 406.95 -1.72 -76.72 By element: Atomic # 1 Polarization: 16.22 SS G_CDS: 0.14 Total: 16.35 kcal Atomic # 6 Polarization: 9.01 SS G_CDS: 6.30 Total: 15.31 kcal Atomic # 7 Polarization: -119.38 SS G_CDS: -8.66 Total: -128.04 kcal Atomic # 8 Polarization: -26.51 SS G_CDS: -1.52 Total: -28.03 kcal Atomic # 14 Polarization: 45.65 SS G_CDS: 2.03 Total: 47.68 kcal Total: -75.00 -1.72 -76.72 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001479939620.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.220 kcal (2) G-P(sol) polarization free energy of solvation -75.003 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -82.223 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.720 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.722 kcal (6) G-S(sol) free energy of system = (1) + (5) -83.943 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds