Wall clock time and date at job start Sat Apr 11 2020 05:49:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52998 * 109.47218 * 2 1 4 4 H 1.09000 * 109.48076 * 55.02015 * 3 2 1 5 5 C 1.53101 * 109.47902 * 175.05825 * 3 2 1 6 6 C 1.53173 * 109.16111 * 177.59199 * 5 3 2 7 7 H 1.09004 * 109.61920 * 62.92553 * 6 5 3 8 8 C 1.50695 * 109.54398 * 183.15046 * 6 5 3 9 9 O 1.21284 * 119.99852 * 359.55686 * 8 6 5 10 10 N 1.34782 * 120.00225 * 179.55622 * 8 6 5 11 11 C 1.46503 * 119.99813 * 179.97438 * 10 8 6 12 12 C 1.53002 * 109.46870 * 179.97438 * 11 10 8 13 13 N 1.46898 * 109.46862 * 180.02562 * 12 11 10 14 14 C 1.46898 * 110.99932 * 294.30224 * 13 12 11 15 15 C 1.53234 * 109.34084 * 172.75252 * 14 13 12 16 16 N 1.47073 * 108.52581 * 53.82667 * 15 14 13 17 17 C 1.36939 * 120.88376 * 128.83730 * 16 15 14 18 18 H 1.07997 * 119.99975 * 206.56879 * 17 16 15 19 19 C 1.38806 * 119.99882 * 26.56718 * 17 16 15 20 20 N 1.31622 * 119.99959 * 17.01681 * 19 17 16 21 21 Si 1.86800 * 120.00437 * 197.01483 * 19 17 16 22 22 H 1.48503 * 109.47074 * 89.99681 * 21 19 17 23 23 H 1.48499 * 109.47745 * 210.00214 * 21 19 17 24 24 H 1.48502 * 109.46761 * 330.00374 * 21 19 17 25 25 C 1.47083 * 118.23731 * 308.81853 * 16 15 14 26 26 C 1.46896 * 110.99705 * 170.00345 * 13 12 11 27 27 C 1.53180 * 109.03888 * 303.01840 * 6 5 3 28 28 C 1.53095 * 109.16348 * 56.98096 * 27 6 5 29 29 O 1.42900 * 109.48160 * 294.99588 * 3 2 1 30 30 H 1.08994 * 109.46816 * 300.00622 * 1 2 3 31 31 H 1.09001 * 109.46473 * 59.99844 * 1 2 3 32 32 H 1.08996 * 109.47233 * 179.97438 * 1 2 3 33 33 H 1.09002 * 109.47086 * 240.00195 * 2 1 3 34 34 H 1.08998 * 109.47202 * 120.00178 * 2 1 3 35 35 H 1.08995 * 109.52152 * 57.68813 * 5 3 2 36 36 H 1.08996 * 109.51709 * 297.49792 * 5 3 2 37 37 H 0.96990 * 119.99808 * 359.97438 * 10 8 6 38 38 H 1.09006 * 109.46964 * 60.00120 * 11 10 8 39 39 H 1.08994 * 109.47238 * 300.00123 * 11 10 8 40 40 H 1.08995 * 109.46991 * 300.00391 * 12 11 10 41 41 H 1.08995 * 109.46708 * 60.00143 * 12 11 10 42 42 H 1.09000 * 109.49134 * 292.70867 * 14 13 12 43 43 H 1.08996 * 109.49255 * 52.78911 * 14 13 12 44 44 H 1.09008 * 109.62534 * 294.11768 * 15 14 13 45 45 H 1.09001 * 109.63375 * 173.54321 * 15 14 13 46 46 H 0.97000 * 120.00273 * 179.97438 * 20 19 17 47 47 H 1.08997 * 109.62847 * 291.47542 * 25 16 15 48 48 H 1.09002 * 109.62821 * 170.88837 * 25 16 15 49 49 H 1.08999 * 109.49381 * 307.20714 * 26 13 12 50 50 H 1.09002 * 109.49799 * 67.29164 * 26 13 12 51 51 H 1.09000 * 109.52666 * 176.88755 * 27 6 5 52 52 H 1.09002 * 109.51872 * 297.08023 * 27 6 5 53 53 H 1.08997 * 109.47928 * 62.37647 * 28 27 6 54 54 H 1.09000 * 109.47998 * 182.40470 * 28 27 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.6058 1.9816 0.8420 5 6 3.5660 1.4444 0.1243 6 6 4.0736 2.8883 0.0631 7 1 3.6814 3.4504 0.9107 8 6 5.5798 2.8955 0.1069 9 8 6.1891 1.8500 0.1881 10 7 6.2500 4.0638 0.0559 11 6 7.7144 4.0707 0.0991 12 6 8.2199 5.5129 0.0260 13 7 9.6883 5.5198 0.0687 14 6 10.1795 5.0350 1.3654 15 6 11.7034 4.8859 1.3073 16 7 12.2812 6.1628 0.8613 17 6 13.2936 6.7598 1.5641 18 1 13.4243 7.8308 1.5182 19 6 14.1519 5.9883 2.3354 20 7 14.2206 4.6880 2.1427 21 14 15.2095 6.7952 3.6468 22 1 14.4708 6.8159 4.9349 23 1 16.4686 6.0251 3.8105 24 1 15.5298 8.1863 3.2375 25 6 11.7431 6.7813 -0.3598 26 6 10.2175 6.8558 -0.2360 27 6 3.5959 3.5309 -1.2428 28 6 2.0688 3.4484 -1.3144 29 8 1.6622 2.0816 -1.2210 30 1 -0.3633 0.5139 0.8899 31 1 -0.3632 0.5139 -0.8900 32 1 -0.3633 -1.0276 -0.0005 33 1 1.8934 -0.5138 -0.8900 34 1 1.8934 -0.5138 0.8899 35 1 3.9990 0.8711 -0.6953 36 1 3.8544 0.9969 1.0754 37 1 5.7628 4.8999 -0.0094 38 1 8.1055 3.5056 -0.7470 39 1 8.0526 3.6135 1.0290 40 1 7.8817 5.9697 -0.9041 41 1 7.8288 6.0783 0.8717 42 1 9.9134 5.7488 2.1451 43 1 9.7276 4.0683 1.5872 44 1 11.9676 4.0982 0.6017 45 1 12.0851 4.6373 2.2976 46 1 14.8206 4.1489 2.6814 47 1 12.0110 6.1758 -1.2256 48 1 12.1509 7.7860 -0.4716 49 1 9.7932 7.2096 -1.1756 50 1 9.9509 7.5443 0.5660 51 1 3.9058 4.5756 -1.2695 52 1 4.0295 2.9996 -2.0901 53 1 1.6352 4.0138 -0.4896 54 1 1.7262 3.8658 -2.2612 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001479939621.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:49:57 Heat of formation + Delta-G solvation = -91.403569 kcal Electronic energy + Delta-G solvation = -29901.392964 eV Core-core repulsion = 25872.185812 eV Total energy + Delta-G solvation = -4029.207153 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 339.231 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -41.43711 -40.01505 -39.55475 -36.88454 -35.52525 -34.95615 -34.65885 -33.26685 -31.66957 -30.76793 -30.34872 -27.94003 -26.64394 -25.04448 -24.55187 -24.26564 -23.04558 -22.53005 -21.76543 -20.96770 -20.74237 -18.75769 -18.20442 -17.47909 -17.35808 -16.89839 -16.82843 -16.45973 -16.05969 -15.86570 -15.56465 -15.46810 -15.32857 -15.16140 -14.89176 -14.84152 -14.60201 -14.44491 -14.32372 -14.07907 -13.75797 -13.22722 -13.02325 -12.85349 -12.75292 -12.72383 -12.63865 -12.57232 -12.36198 -12.23216 -12.11175 -12.05182 -11.87143 -11.79878 -11.61425 -11.57520 -11.43843 -11.34979 -10.94477 -10.60648 -10.38625 -10.13374 -9.31799 -8.70440 -7.88819 -5.34044 1.45768 1.46806 1.56206 1.57132 2.01525 2.49704 2.87628 3.06528 3.26674 3.54133 3.61759 3.66636 3.76271 3.84672 3.93695 4.05935 4.13728 4.17607 4.28005 4.33225 4.37758 4.41342 4.44432 4.46012 4.52788 4.53973 4.63549 4.69569 4.73104 4.74855 4.80495 4.84106 4.90936 4.91460 4.98627 5.02861 5.07606 5.12611 5.14146 5.18771 5.19478 5.31124 5.35232 5.38091 5.46783 5.59897 5.65632 6.12182 6.21745 6.34785 6.35699 6.51389 7.11397 7.21901 7.82493 8.36719 9.18085 Molecular weight = 339.23amu Principal moments of inertia in cm(-1) A = 0.027824 B = 0.001738 C = 0.001671 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1006.087777 B =16109.119612 C =16754.539011 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.120 4.120 3 C 0.096 3.904 4 H 0.075 0.925 5 C -0.129 4.129 6 C -0.101 4.101 7 H 0.126 0.874 8 C 0.513 3.487 9 O -0.587 6.587 10 N -0.711 5.711 11 C 0.129 3.871 12 C 0.056 3.944 13 N -0.544 5.544 14 C 0.051 3.949 15 C 0.184 3.816 16 N -0.614 5.614 17 C -0.264 4.264 18 H 0.071 0.929 19 C -0.054 4.054 20 N -0.938 5.938 21 Si 0.970 3.030 22 H -0.286 1.286 23 H -0.296 1.296 24 H -0.266 1.266 25 C 0.140 3.860 26 C 0.058 3.942 27 C -0.142 4.142 28 C 0.060 3.940 29 O -0.396 6.396 30 H 0.060 0.940 31 H 0.053 0.947 32 H 0.059 0.941 33 H 0.059 0.941 34 H 0.084 0.916 35 H 0.054 0.946 36 H 0.072 0.928 37 H 0.417 0.583 38 H 0.056 0.944 39 H 0.048 0.952 40 H 0.103 0.897 41 H 0.048 0.952 42 H 0.024 0.976 43 H 0.073 0.927 44 H -0.005 1.005 45 H 0.055 0.945 46 H 0.250 0.750 47 H 0.014 0.986 48 H 0.064 0.936 49 H 0.101 0.899 50 H 0.029 0.971 51 H 0.106 0.894 52 H 0.059 0.941 53 H 0.072 0.928 54 H 0.111 0.889 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -31.285 0.221 -5.337 31.737 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.158 4.158 3 C 0.038 3.962 4 H 0.093 0.907 5 C -0.168 4.168 6 C -0.122 4.122 7 H 0.144 0.856 8 C 0.300 3.700 9 O -0.467 6.467 10 N -0.364 5.364 11 C 0.004 3.996 12 C -0.073 4.073 13 N -0.270 5.270 14 C -0.079 4.079 15 C 0.058 3.942 16 N -0.338 5.338 17 C -0.394 4.394 18 H 0.089 0.911 19 C -0.249 4.249 20 N -0.584 5.584 21 Si 0.798 3.202 22 H -0.212 1.212 23 H -0.223 1.223 24 H -0.191 1.191 25 C 0.015 3.985 26 C -0.070 4.070 27 C -0.180 4.180 28 C -0.016 4.016 29 O -0.316 6.316 30 H 0.079 0.921 31 H 0.072 0.928 32 H 0.078 0.922 33 H 0.078 0.922 34 H 0.102 0.898 35 H 0.073 0.927 36 H 0.091 0.909 37 H 0.255 0.745 38 H 0.074 0.926 39 H 0.066 0.934 40 H 0.122 0.878 41 H 0.066 0.934 42 H 0.042 0.958 43 H 0.092 0.908 44 H 0.013 0.987 45 H 0.073 0.927 46 H 0.059 0.941 47 H 0.032 0.968 48 H 0.082 0.918 49 H 0.120 0.880 50 H 0.048 0.952 51 H 0.124 0.876 52 H 0.078 0.922 53 H 0.090 0.910 54 H 0.129 0.871 Dipole moment (debyes) X Y Z Total from point charges -30.651 -0.998 -5.723 31.197 hybrid contribution 1.164 0.757 1.453 2.010 sum -29.487 -0.241 -4.270 29.796 Atomic orbital electron populations 1.21678 0.94458 1.01983 1.02121 1.21585 0.97267 0.94107 1.02814 1.22186 0.91938 0.94721 0.87354 0.90714 1.22019 0.96502 0.95236 1.02994 1.21414 0.89375 0.99305 1.02112 0.85622 1.21192 0.91114 0.82993 0.74678 1.90720 1.71347 1.33576 1.51076 1.45768 1.06713 1.09456 1.74484 1.21106 0.79753 0.97495 1.01253 1.22183 0.87315 0.94855 1.02898 1.61749 1.07914 1.26127 1.31163 1.22596 0.97077 0.98927 0.89273 1.20601 0.88929 0.86592 0.98059 1.44409 1.39640 1.23729 1.26034 1.19575 1.05829 0.91370 1.22592 0.91141 1.25835 0.99210 0.96296 1.03549 1.70204 1.40649 1.06055 1.41487 0.85225 0.77547 0.78085 0.79340 1.21241 1.22272 1.19065 1.21184 0.92540 0.96664 0.88117 1.22471 0.95767 0.88023 1.00778 1.22224 0.98042 1.02591 0.95182 1.22740 0.92319 0.82535 1.04012 1.87930 1.78581 1.25900 1.39152 0.92127 0.92816 0.92177 0.92238 0.89786 0.92727 0.90892 0.74511 0.92586 0.93398 0.87837 0.93404 0.95803 0.90838 0.98729 0.92653 0.94125 0.96765 0.91777 0.88041 0.95228 0.87562 0.92242 0.90971 0.87146 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.61 9.81 71.98 0.71 -0.90 16 2 C -0.12 -1.58 5.64 30.59 0.17 -1.40 16 3 C 0.10 1.29 2.64 30.63 0.08 1.37 16 4 H 0.08 0.78 8.14 -2.39 -0.02 0.76 16 5 C -0.13 -2.21 4.01 30.69 0.12 -2.09 16 6 C -0.10 -1.41 2.62 -11.42 -0.03 -1.44 16 7 H 0.13 1.09 8.14 -2.38 -0.02 1.07 16 8 C 0.51 11.37 7.16 87.65 0.63 12.00 16 9 O -0.59 -19.50 15.97 -3.04 -0.05 -19.55 16 10 N -0.71 -12.79 5.46 -463.05 -2.53 -15.31 16 11 C 0.13 3.19 5.60 86.38 0.48 3.68 16 12 C 0.06 1.25 5.08 86.30 0.44 1.69 16 13 N -0.54 -17.77 4.63 -895.28 -4.15 -21.92 16 14 C 0.05 1.97 5.46 86.38 0.47 2.44 16 15 C 0.18 9.32 5.42 86.35 0.47 9.79 16 16 N -0.61 -31.61 3.04 -698.13 -2.12 -33.73 16 17 C -0.26 -14.69 9.63 84.03 0.81 -13.88 16 18 H 0.07 3.78 7.88 -2.91 -0.02 3.75 16 19 C -0.05 -3.05 4.94 84.86 0.42 -2.63 16 20 N -0.94 -56.95 11.15 21.65 0.24 -56.71 16 21 Si 0.97 45.34 29.59 68.60 2.03 47.37 16 22 H -0.29 -13.12 7.11 99.48 0.71 -12.41 16 23 H -0.30 -13.98 7.11 99.48 0.71 -13.27 16 24 H -0.27 -11.74 7.11 99.48 0.71 -11.03 16 25 C 0.14 5.82 6.69 86.35 0.58 6.40 16 26 C 0.06 1.86 5.62 86.39 0.49 2.35 16 27 C -0.14 -1.44 5.29 30.69 0.16 -1.27 16 28 C 0.06 0.53 6.84 72.01 0.49 1.03 16 29 O -0.40 -5.96 9.94 -148.98 -1.48 -7.44 16 30 H 0.06 0.56 8.14 -2.39 -0.02 0.54 16 31 H 0.05 0.69 7.82 -2.39 -0.02 0.67 16 32 H 0.06 0.58 8.14 -2.39 -0.02 0.57 16 33 H 0.06 0.92 8.14 -2.39 -0.02 0.90 16 34 H 0.08 0.96 8.14 -2.39 -0.02 0.94 16 35 H 0.05 1.22 8.03 -2.39 -0.02 1.20 16 36 H 0.07 1.34 8.14 -2.39 -0.02 1.32 16 37 H 0.42 4.11 7.96 -92.72 -0.74 3.38 16 38 H 0.06 1.65 8.14 -2.38 -0.02 1.63 16 39 H 0.05 1.43 6.40 -2.39 -0.02 1.41 16 40 H 0.10 1.79 7.97 -2.39 -0.02 1.77 16 41 H 0.05 0.99 8.12 -2.39 -0.02 0.97 16 42 H 0.02 0.94 8.14 -2.39 -0.02 0.92 16 43 H 0.07 2.70 6.16 -2.39 -0.01 2.68 16 44 H -0.01 -0.30 8.14 -2.38 -0.02 -0.32 16 45 H 0.06 3.14 6.12 -2.39 -0.01 3.12 16 46 H 0.25 14.68 8.31 -92.71 -0.77 13.91 16 47 H 0.01 0.62 8.14 -2.39 -0.02 0.61 16 48 H 0.06 2.51 7.95 -2.39 -0.02 2.49 16 49 H 0.10 2.48 7.99 -2.39 -0.02 2.46 16 50 H 0.03 0.95 8.14 -2.39 -0.02 0.93 16 51 H 0.11 0.49 7.67 -2.39 -0.02 0.47 16 52 H 0.06 0.86 8.14 -2.39 -0.02 0.85 16 53 H 0.07 0.38 8.14 -2.39 -0.02 0.36 16 54 H 0.11 0.70 8.14 -2.39 -0.02 0.68 16 Total: -1.00 -75.41 414.08 -1.44 -76.86 By element: Atomic # 1 Polarization: 13.20 SS G_CDS: 0.12 Total: 13.32 kcal Atomic # 6 Polarization: 10.63 SS G_CDS: 6.49 Total: 17.12 kcal Atomic # 7 Polarization: -119.12 SS G_CDS: -8.55 Total: -127.68 kcal Atomic # 8 Polarization: -25.46 SS G_CDS: -1.53 Total: -26.99 kcal Atomic # 14 Polarization: 45.34 SS G_CDS: 2.03 Total: 47.37 kcal Total: -75.41 -1.44 -76.86 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001479939621.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.547 kcal (2) G-P(sol) polarization free energy of solvation -75.413 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -89.960 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.444 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.857 kcal (6) G-S(sol) free energy of system = (1) + (5) -91.404 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds