Wall clock time and date at job start Sat Apr 11 2020 05:50:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52994 * 109.47265 * 2 1 4 4 H 1.09008 * 109.46970 * 304.99734 * 3 2 1 5 5 C 1.53001 * 109.47368 * 64.99313 * 3 2 1 6 6 C 1.52997 * 109.47404 * 184.99783 * 3 2 1 7 7 C 1.50701 * 109.47212 * 174.99684 * 6 3 2 8 8 O 1.21280 * 119.99781 * 0.02562 * 7 6 3 9 9 N 1.34780 * 119.99795 * 179.97438 * 7 6 3 10 10 C 1.46920 * 120.63110 * 0.02562 * 9 7 6 11 11 C 1.53193 * 108.77389 * 126.36407 * 10 9 7 12 12 C 1.53040 * 109.30943 * 54.63814 * 11 10 9 13 13 C 1.53046 * 109.54022 * 298.62950 * 12 11 10 14 14 H 1.09002 * 109.49744 * 301.38765 * 13 12 11 15 15 N 1.46891 * 109.49962 * 181.32098 * 13 12 11 16 16 C 1.46903 * 111.00090 * 183.95779 * 15 13 12 17 17 C 1.46899 * 111.00430 * 60.00164 * 15 13 12 18 18 C 1.50694 * 109.47109 * 189.99932 * 17 15 13 19 19 O 1.21292 * 120.00280 * 0.02562 * 18 17 15 20 20 N 1.34780 * 119.99841 * 179.97438 * 18 17 15 21 21 C 1.37095 * 120.00298 * 180.02562 * 20 18 17 22 22 H 1.07998 * 119.99962 * 359.97438 * 21 20 18 23 23 C 1.38947 * 120.00492 * 180.02562 * 21 20 18 24 24 N 1.31418 * 119.99641 * 0.02562 * 23 21 20 25 25 Si 1.86797 * 120.00569 * 179.97438 * 23 21 20 26 26 H 1.48498 * 109.46824 * 89.99790 * 25 23 21 27 27 H 1.48493 * 109.47438 * 209.99933 * 25 23 21 28 28 H 1.48501 * 109.47085 * 330.00472 * 25 23 21 29 29 C 1.46928 * 120.62698 * 179.72199 * 9 7 6 30 30 H 1.09000 * 109.46720 * 60.00379 * 1 2 3 31 31 H 1.08998 * 109.47049 * 180.02562 * 1 2 3 32 32 H 1.08992 * 109.47227 * 299.99948 * 1 2 3 33 33 H 1.09001 * 109.47031 * 239.99263 * 2 1 3 34 34 H 1.09009 * 109.46835 * 119.99774 * 2 1 3 35 35 H 1.08996 * 109.47271 * 300.00893 * 5 3 2 36 36 H 1.09008 * 109.46731 * 60.00275 * 5 3 2 37 37 H 1.08998 * 109.47430 * 180.02562 * 5 3 2 38 38 H 1.09002 * 109.47153 * 54.99686 * 6 3 2 39 39 H 1.09001 * 109.46832 * 294.99876 * 6 3 2 40 40 H 1.08998 * 109.58454 * 246.15028 * 10 9 7 41 41 H 1.09003 * 109.58754 * 6.43610 * 10 9 7 42 42 H 1.09007 * 109.49938 * 174.58337 * 11 10 9 43 43 H 1.09003 * 109.50033 * 294.65210 * 11 10 9 44 44 H 1.08998 * 109.46254 * 58.65341 * 12 11 10 45 45 H 1.09007 * 109.46095 * 178.61436 * 12 11 10 46 46 H 1.09001 * 109.47274 * 59.99182 * 16 15 13 47 47 H 1.08997 * 109.47481 * 179.97438 * 16 15 13 48 48 H 1.09008 * 109.46742 * 299.99874 * 16 15 13 49 49 H 1.09007 * 109.46844 * 310.00142 * 17 15 13 50 50 H 1.09004 * 109.47138 * 69.99583 * 17 15 13 51 51 H 0.96999 * 120.00010 * 0.02562 * 20 18 17 52 52 H 0.97005 * 119.99727 * 180.02562 * 24 23 21 53 53 H 1.09003 * 109.58862 * 353.41739 * 29 9 7 54 54 H 1.08997 * 109.58643 * 113.84800 * 29 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.6054 1.9815 -0.8419 5 6 1.6352 2.1266 1.3073 6 6 3.5648 1.4443 -0.1257 7 6 4.0570 2.8633 -0.2493 8 8 3.2660 3.7826 -0.2375 9 7 5.3762 3.1107 -0.3718 10 6 6.3465 2.0076 -0.3872 11 6 7.2187 2.1356 -1.6400 12 6 7.8506 3.5290 -1.6766 13 6 6.7488 4.5890 -1.7449 14 1 6.1381 4.4224 -2.6323 15 7 7.3567 5.9245 -1.8118 16 6 6.3283 6.9732 -1.7840 17 6 8.2102 6.0556 -3.0003 18 6 9.0035 7.3336 -2.9105 19 8 8.8714 8.0634 -1.9507 20 7 9.8607 7.6654 -3.8964 21 6 10.5828 8.8278 -3.8146 22 1 10.4646 9.4780 -2.9604 23 6 11.4661 9.1701 -4.8311 24 7 11.6088 8.3797 -5.8713 25 14 12.4496 10.7543 -4.7200 26 1 13.7370 10.4901 -4.0286 27 1 12.7182 11.2671 -6.0874 28 1 11.6754 11.7649 -3.9554 29 6 5.8707 4.4884 -0.4994 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3633 -1.0276 0.0005 32 1 -0.3633 0.5138 0.8899 33 1 1.8933 -0.5140 -0.8899 34 1 1.8933 -0.5138 0.8901 35 1 0.5489 2.1252 1.3968 36 1 2.0698 1.5875 2.1492 37 1 1.9981 3.1544 1.3071 38 1 3.8571 0.8799 -1.0112 39 1 4.0029 0.9836 0.7598 40 1 6.9743 2.0609 0.5022 41 1 5.8167 1.0552 -0.4039 42 1 8.0044 1.3804 -1.6150 43 1 6.6034 1.9912 -2.5281 44 1 8.4459 3.6815 -0.7764 45 1 8.4913 3.6143 -2.5543 46 1 5.7554 6.8958 -0.8599 47 1 6.8057 7.9518 -1.8343 48 1 5.6606 6.8499 -2.6368 49 1 8.8926 5.2072 -3.0529 50 1 7.5871 6.0767 -3.8945 51 1 9.9666 7.0816 -4.6638 52 1 12.2257 8.6184 -6.5808 53 1 5.0270 5.1723 -0.5928 54 1 6.4589 4.7485 0.3807 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001480725915.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:50:15 Heat of formation + Delta-G solvation = -100.918668 kcal Electronic energy + Delta-G solvation = -30367.266103 eV Core-core repulsion = 26337.646344 eV Total energy + Delta-G solvation = -4029.619758 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 339.231 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -41.51394 -40.44532 -39.17869 -37.30088 -36.85081 -35.84547 -33.46214 -33.28785 -32.12719 -31.00869 -29.47496 -28.71038 -27.08959 -26.02718 -25.57812 -24.47745 -22.91794 -21.65354 -20.94111 -20.77797 -19.88883 -19.76342 -18.35727 -17.75335 -17.18262 -16.71101 -16.59665 -16.39561 -16.10223 -15.89266 -15.58889 -15.48568 -15.23532 -15.13715 -15.01530 -14.61464 -14.24975 -14.16296 -13.99129 -13.76213 -13.64050 -13.39573 -13.33599 -13.04934 -12.78040 -12.75005 -12.72022 -12.66412 -12.42118 -12.36289 -12.17664 -12.12725 -11.94118 -11.78467 -11.59593 -11.48854 -11.46358 -11.40923 -11.36602 -10.64848 -10.29552 -10.00053 -9.64887 -9.29711 -8.46378 -5.94873 1.37797 1.41555 1.54103 1.64745 1.91917 2.04719 2.29220 2.76660 3.19965 3.35912 3.51185 3.76776 3.83282 3.85962 3.99173 4.01318 4.09426 4.18176 4.25027 4.27426 4.32477 4.46282 4.47024 4.51637 4.53438 4.55155 4.62902 4.68588 4.69666 4.73433 4.80516 4.81704 4.85538 4.93630 4.98964 5.07819 5.11213 5.14875 5.16355 5.20447 5.26092 5.33791 5.37542 5.41625 5.46496 5.55204 5.61162 5.83538 6.03174 6.15612 6.45528 6.60869 7.13281 7.21027 7.56250 8.12395 8.71003 Molecular weight = 339.23amu Principal moments of inertia in cm(-1) A = 0.030431 B = 0.001886 C = 0.001839 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 919.883510 B =14844.588804 C =15222.204190 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C -0.113 4.113 3 C -0.076 4.076 4 H 0.053 0.947 5 C -0.151 4.151 6 C -0.128 4.128 7 C 0.506 3.494 8 O -0.584 6.584 9 N -0.611 5.611 10 C 0.100 3.900 11 C -0.125 4.125 12 C -0.118 4.118 13 C 0.079 3.921 14 H 0.036 0.964 15 N -0.525 5.525 16 C 0.027 3.973 17 C 0.057 3.943 18 C 0.442 3.558 19 O -0.613 6.613 20 N -0.573 5.573 21 C -0.333 4.333 22 H 0.078 0.922 23 C -0.012 4.012 24 N -0.920 5.920 25 Si 0.993 3.007 26 H -0.270 1.270 27 H -0.271 1.271 28 H -0.275 1.275 29 C 0.124 3.876 30 H 0.045 0.955 31 H 0.063 0.937 32 H 0.052 0.948 33 H 0.073 0.927 34 H 0.075 0.925 35 H 0.054 0.946 36 H 0.060 0.940 37 H 0.042 0.958 38 H 0.118 0.882 39 H 0.119 0.881 40 H 0.082 0.918 41 H 0.119 0.881 42 H 0.107 0.893 43 H 0.068 0.932 44 H 0.070 0.930 45 H 0.069 0.931 46 H 0.073 0.927 47 H 0.061 0.939 48 H 0.022 0.978 49 H 0.117 0.883 50 H 0.060 0.940 51 H 0.396 0.604 52 H 0.277 0.723 53 H 0.069 0.931 54 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.982 -24.343 8.966 29.957 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C -0.150 4.150 3 C -0.095 4.095 4 H 0.071 0.929 5 C -0.209 4.209 6 C -0.167 4.167 7 C 0.296 3.704 8 O -0.464 6.464 9 N -0.344 5.344 10 C -0.021 4.021 11 C -0.164 4.164 12 C -0.156 4.156 13 C -0.030 4.030 14 H 0.054 0.946 15 N -0.250 5.250 16 C -0.121 4.121 17 C -0.074 4.074 18 C 0.230 3.770 19 O -0.499 6.499 20 N -0.211 5.211 21 C -0.462 4.462 22 H 0.096 0.904 23 C -0.212 4.212 24 N -0.561 5.561 25 Si 0.816 3.184 26 H -0.196 1.196 27 H -0.196 1.196 28 H -0.200 1.200 29 C 0.000 4.000 30 H 0.065 0.935 31 H 0.082 0.918 32 H 0.071 0.929 33 H 0.092 0.908 34 H 0.094 0.906 35 H 0.073 0.927 36 H 0.079 0.921 37 H 0.061 0.939 38 H 0.136 0.864 39 H 0.137 0.863 40 H 0.100 0.900 41 H 0.137 0.863 42 H 0.125 0.875 43 H 0.086 0.914 44 H 0.089 0.911 45 H 0.088 0.912 46 H 0.092 0.908 47 H 0.080 0.920 48 H 0.040 0.960 49 H 0.134 0.866 50 H 0.078 0.922 51 H 0.229 0.771 52 H 0.087 0.913 53 H 0.088 0.912 54 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -15.072 -23.309 9.862 29.458 hybrid contribution 0.119 1.198 -1.307 1.777 sum -14.954 -22.111 8.555 28.031 Atomic orbital electron populations 1.21830 0.96078 1.01926 1.01548 1.21549 0.95899 0.94511 1.03075 1.20909 0.93329 0.96991 0.98311 0.92889 1.21943 1.01270 1.00602 0.97048 1.21857 0.97077 0.91478 1.06289 1.21510 0.81166 0.93001 0.74689 1.90660 1.55277 1.48463 1.52010 1.48269 1.06687 1.07318 1.72090 1.22115 0.91247 0.89721 0.99037 1.21909 1.00059 0.96214 0.98199 1.21707 0.96789 0.93892 1.03226 1.21883 0.95591 0.88546 0.96999 0.94615 1.61556 1.21413 1.02825 1.39215 1.22419 0.93220 0.96173 1.00322 1.21788 0.96795 0.96496 0.92338 1.20695 0.83459 0.89233 0.83654 1.90466 1.69604 1.55260 1.34605 1.41913 1.37221 1.21507 1.20460 1.19654 1.20149 0.99732 1.06673 0.90356 1.26018 0.98360 1.02317 0.94508 1.69675 1.37833 1.38954 1.09632 0.84933 0.78219 0.77398 0.77810 1.19552 1.19561 1.19953 1.21270 0.97324 0.83950 0.97428 0.93547 0.91805 0.92859 0.90813 0.90622 0.92665 0.92074 0.93878 0.86383 0.86331 0.90021 0.86288 0.87508 0.91366 0.91126 0.91222 0.90822 0.92028 0.95988 0.86550 0.92178 0.77054 0.91323 0.91231 0.91123 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.61 9.67 71.98 0.70 -0.91 16 2 C -0.11 -1.03 5.40 30.59 0.17 -0.86 16 3 C -0.08 -1.09 2.04 -10.80 -0.02 -1.11 16 4 H 0.05 1.02 7.96 -2.38 -0.02 1.00 16 5 C -0.15 -2.57 8.69 71.98 0.63 -1.94 16 6 C -0.13 -1.48 3.52 29.85 0.11 -1.37 16 7 C 0.51 10.65 7.42 87.66 0.65 11.30 16 8 O -0.58 -17.77 13.38 -3.03 -0.04 -17.81 16 9 N -0.61 -11.69 2.98 -819.81 -2.44 -14.13 16 10 C 0.10 1.07 6.34 86.36 0.55 1.62 16 11 C -0.13 -1.49 6.08 30.67 0.19 -1.30 16 12 C -0.12 -2.35 5.00 30.62 0.15 -2.20 16 13 C 0.08 2.02 2.08 44.84 0.09 2.12 16 14 H 0.04 0.96 8.14 -2.39 -0.02 0.94 16 15 N -0.53 -17.80 4.37 -902.06 -3.94 -21.74 16 16 C 0.03 0.95 8.75 127.69 1.12 2.07 16 17 C 0.06 2.03 5.26 85.56 0.45 2.48 16 18 C 0.44 21.42 7.47 87.65 0.66 22.07 16 19 O -0.61 -34.36 13.91 -3.07 -0.04 -34.40 16 20 N -0.57 -29.74 5.29 -306.99 -1.62 -31.37 16 21 C -0.33 -19.05 9.68 84.04 0.81 -18.23 16 22 H 0.08 4.79 7.16 -2.91 -0.02 4.77 16 23 C -0.01 -0.66 5.50 84.92 0.47 -0.20 16 24 N -0.92 -49.73 13.05 21.66 0.28 -49.44 16 25 Si 0.99 43.26 29.55 68.60 2.03 45.28 16 26 H -0.27 -11.39 7.11 99.48 0.71 -10.68 16 27 H -0.27 -11.16 7.11 99.48 0.71 -10.46 16 28 H -0.27 -12.09 7.11 99.48 0.71 -11.38 16 29 C 0.12 3.14 5.13 86.21 0.44 3.59 16 30 H 0.05 0.54 8.14 -2.39 -0.02 0.53 16 31 H 0.06 0.52 8.14 -2.39 -0.02 0.50 16 32 H 0.05 0.59 6.56 -2.39 -0.02 0.57 16 33 H 0.07 0.52 8.14 -2.39 -0.02 0.50 16 34 H 0.08 0.52 8.14 -2.38 -0.02 0.50 16 35 H 0.05 0.89 6.56 -2.39 -0.02 0.87 16 36 H 0.06 0.83 8.14 -2.38 -0.02 0.81 16 37 H 0.04 1.02 5.95 -2.39 -0.01 1.00 16 38 H 0.12 0.80 7.70 -2.39 -0.02 0.78 16 39 H 0.12 0.80 7.94 -2.39 -0.02 0.78 16 40 H 0.08 0.79 8.14 -2.39 -0.02 0.77 16 41 H 0.12 0.50 5.93 -2.39 -0.01 0.49 16 42 H 0.11 0.78 8.14 -2.38 -0.02 0.76 16 43 H 0.07 0.83 8.14 -2.39 -0.02 0.81 16 44 H 0.07 1.52 8.14 -2.39 -0.02 1.50 16 45 H 0.07 1.42 6.13 -2.38 -0.01 1.41 16 46 H 0.07 2.41 6.37 -2.39 -0.02 2.40 16 47 H 0.06 2.65 5.83 -2.39 -0.01 2.64 16 48 H 0.02 0.73 8.14 -2.38 -0.02 0.71 16 49 H 0.12 3.60 5.80 -2.38 -0.01 3.58 16 50 H 0.06 2.00 8.12 -2.39 -0.02 1.98 16 51 H 0.40 19.44 7.90 -92.71 -0.73 18.71 16 52 H 0.28 14.02 8.31 -92.70 -0.77 13.25 16 53 H 0.07 2.10 5.56 -2.39 -0.01 2.09 16 54 H 0.07 1.87 8.14 -2.39 -0.02 1.85 16 Total: -1.00 -74.03 409.37 1.52 -72.50 By element: Atomic # 1 Polarization: 33.83 SS G_CDS: 0.16 Total: 33.98 kcal Atomic # 6 Polarization: 9.97 SS G_CDS: 7.15 Total: 17.11 kcal Atomic # 7 Polarization: -108.95 SS G_CDS: -7.72 Total: -116.68 kcal Atomic # 8 Polarization: -52.13 SS G_CDS: -0.08 Total: -52.21 kcal Atomic # 14 Polarization: 43.26 SS G_CDS: 2.03 Total: 45.28 kcal Total: -74.03 1.52 -72.50 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001480725915.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -28.414 kcal (2) G-P(sol) polarization free energy of solvation -74.029 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -102.443 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.525 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.505 kcal (6) G-S(sol) free energy of system = (1) + (5) -100.919 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds