Wall clock time and date at job start Sat Apr 11 2020 05:50:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52996 * 109.47057 * 2 1 4 4 H 1.09004 * 109.47252 * 304.99536 * 3 2 1 5 5 C 1.52996 * 109.47514 * 64.99585 * 3 2 1 6 6 C 1.52997 * 109.47356 * 179.97438 * 5 3 2 7 7 C 1.53000 * 109.47554 * 300.00505 * 6 5 3 8 8 C 1.52996 * 109.47201 * 59.99400 * 7 6 5 9 9 C 1.52997 * 109.47356 * 300.00721 * 8 7 6 10 10 H 1.09004 * 109.47151 * 179.97438 * 9 8 7 11 11 C 1.50700 * 109.46834 * 299.99548 * 9 8 7 12 12 O 1.21278 * 120.00086 * 119.99978 * 11 9 8 13 13 N 1.34781 * 120.00043 * 300.00016 * 11 9 8 14 14 C 1.46502 * 119.99624 * 179.97438 * 13 11 9 15 15 C 1.53000 * 109.46588 * 180.02562 * 14 13 11 16 16 N 1.46905 * 109.46719 * 180.02562 * 15 14 13 17 17 C 1.46894 * 110.99739 * 293.94952 * 16 15 14 18 18 C 1.46903 * 110.99910 * 169.99903 * 16 15 14 19 19 C 1.50699 * 109.47398 * 189.99676 * 18 16 15 20 20 O 1.21297 * 119.99867 * 359.97438 * 19 18 16 21 21 N 1.34774 * 120.00325 * 180.02562 * 19 18 16 22 22 C 1.37092 * 119.99974 * 179.97438 * 21 19 18 23 23 H 1.08000 * 120.00583 * 0.02562 * 22 21 19 24 24 C 1.38955 * 120.00110 * 179.97438 * 22 21 19 25 25 N 1.31413 * 119.99820 * 0.02562 * 24 22 21 26 26 Si 1.86796 * 120.00230 * 179.72236 * 24 22 21 27 27 H 1.48497 * 109.47173 * 0.02562 * 26 24 22 28 28 H 1.48506 * 109.46866 * 120.00218 * 26 24 22 29 29 H 1.48501 * 109.47438 * 240.00339 * 26 24 22 30 30 H 1.08997 * 109.47300 * 180.02562 * 1 2 3 31 31 H 1.09000 * 109.47381 * 300.00453 * 1 2 3 32 32 H 1.08999 * 109.47168 * 60.00108 * 1 2 3 33 33 H 1.09000 * 109.47381 * 239.99547 * 2 1 3 34 34 H 1.08995 * 109.46711 * 119.99771 * 2 1 3 35 35 H 1.08994 * 109.47502 * 300.00187 * 5 3 2 36 36 H 1.09004 * 109.46901 * 59.99736 * 5 3 2 37 37 H 1.09004 * 109.47038 * 60.00179 * 6 5 3 38 38 H 1.09004 * 109.47151 * 180.02562 * 6 5 3 39 39 H 1.08997 * 109.47434 * 179.97438 * 7 6 5 40 40 H 1.09004 * 109.46682 * 299.99892 * 7 6 5 41 41 H 1.08994 * 109.47502 * 180.02562 * 8 7 6 42 42 H 1.09004 * 109.46901 * 60.00626 * 8 7 6 43 43 H 0.96991 * 120.00194 * 359.97438 * 13 11 9 44 44 H 1.08997 * 109.46987 * 60.00350 * 14 13 11 45 45 H 1.09000 * 109.47698 * 299.99951 * 14 13 11 46 46 H 1.08997 * 109.47434 * 60.00302 * 15 14 13 47 47 H 1.08999 * 109.47235 * 299.99545 * 15 14 13 48 48 H 1.09001 * 109.47502 * 296.04929 * 17 16 15 49 49 H 1.09000 * 109.47386 * 56.05100 * 17 16 15 50 50 H 1.09005 * 109.47156 * 176.05055 * 17 16 15 51 51 H 1.09005 * 109.47310 * 69.99384 * 18 16 15 52 52 H 1.08999 * 109.47201 * 310.00278 * 18 16 15 53 53 H 0.97005 * 119.99841 * 0.02562 * 21 19 18 54 54 H 0.97000 * 120.00377 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.6054 1.9815 -0.8419 5 6 1.6351 2.1266 1.3072 6 6 2.1457 3.5689 1.3075 7 6 3.6705 3.5703 1.1820 8 6 4.0753 2.8861 -0.1252 9 6 3.5648 1.4438 -0.1254 10 1 3.8528 0.9566 -1.0570 11 6 4.1652 0.6983 1.0385 12 8 3.4445 0.2137 1.8850 13 7 5.5032 0.5701 1.1387 14 6 6.0868 -0.1542 2.2706 15 6 7.6117 -0.1524 2.1453 16 7 8.1969 -0.8792 3.2800 17 6 7.9492 -0.1711 4.5429 18 6 9.6342 -1.1045 3.0759 19 6 10.1478 -2.0550 4.1265 20 8 9.3912 -2.5005 4.9634 21 7 11.4482 -2.4092 4.1370 22 6 11.9155 -3.2734 5.0931 23 1 11.2417 -3.6707 5.8377 24 6 13.2561 -3.6390 5.1036 25 7 14.0760 -3.1559 4.1973 26 14 13.8945 -4.8104 6.4111 27 1 12.7802 -5.2029 7.3107 28 1 14.4542 -6.0219 5.7595 29 1 14.9565 -4.1383 7.2020 30 1 -0.3634 -1.0276 0.0005 31 1 -0.3634 0.5139 0.8899 32 1 -0.3633 0.5138 -0.8900 33 1 1.8934 -0.5139 -0.8899 34 1 1.8932 -0.5138 0.8900 35 1 0.5489 2.1253 1.3968 36 1 2.0697 1.5876 2.1491 37 1 1.7114 4.1082 0.4656 38 1 1.8577 4.0561 2.2390 39 1 4.0342 4.5978 1.1817 40 1 4.1048 3.0310 2.0239 41 1 5.1616 2.8867 -0.2144 42 1 3.6411 3.4254 -0.9671 43 1 6.0796 0.9574 0.4616 44 1 5.7231 -1.1817 2.2708 45 1 5.7985 0.3336 3.2017 46 1 7.9751 0.8752 2.1453 47 1 7.9004 -0.6400 1.2142 48 1 8.4550 0.7943 4.5235 49 1 6.8775 -0.0173 4.6691 50 1 8.3313 -0.7648 5.3734 51 1 10.1653 -0.1558 3.1533 52 1 9.7980 -1.5329 2.0871 53 1 12.0535 -2.0520 3.4685 54 1 15.0118 -3.4108 4.2048 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001480930209.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:50:31 Heat of formation + Delta-G solvation = -113.311547 kcal Electronic energy + Delta-G solvation = -30039.125625 eV Core-core repulsion = 26008.968471 eV Total energy + Delta-G solvation = -4030.157154 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 339.231 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -41.72481 -40.39187 -38.74227 -37.86671 -36.03327 -35.62095 -34.61382 -33.27556 -32.34913 -30.36921 -29.85648 -29.03996 -27.04511 -25.64329 -24.68255 -24.02082 -22.35701 -22.03434 -21.45339 -20.98656 -20.35744 -19.85329 -17.86929 -17.45867 -17.19980 -16.98055 -16.63589 -16.54414 -16.09582 -15.99234 -15.76706 -15.47023 -15.13721 -14.97175 -14.77882 -14.62911 -14.33765 -14.23425 -14.04292 -13.77228 -13.48325 -13.44630 -13.04637 -13.00133 -12.95903 -12.79071 -12.58599 -12.55988 -12.40002 -12.38388 -12.27254 -12.13497 -12.07314 -11.87842 -11.71307 -11.46520 -11.42997 -10.87943 -10.83109 -10.32981 -10.25253 -9.99304 -9.97303 -9.23983 -8.46217 -5.94280 1.36388 1.41780 1.55657 1.75064 2.06717 2.08307 2.31299 2.92972 3.20833 3.42647 3.64456 3.76292 3.80271 3.86965 4.06285 4.15654 4.21398 4.25222 4.30771 4.36877 4.38294 4.46097 4.49304 4.52675 4.57088 4.61658 4.62180 4.64407 4.69093 4.79359 4.85143 4.88295 4.95650 4.99864 5.06260 5.10252 5.18958 5.20799 5.28111 5.32339 5.34698 5.35574 5.42211 5.46817 5.51850 5.56906 5.80267 5.85387 6.04874 6.17163 6.62013 6.64564 7.14542 7.39304 7.58024 8.14603 8.71349 Molecular weight = 339.23amu Principal moments of inertia in cm(-1) A = 0.026936 B = 0.001726 C = 0.001692 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1039.256936 B =16221.167081 C =16548.124261 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.134 4.134 3 C -0.060 4.060 4 H 0.092 0.908 5 C -0.129 4.129 6 C -0.117 4.117 7 C -0.124 4.124 8 C -0.105 4.105 9 C -0.100 4.100 10 H 0.117 0.883 11 C 0.515 3.485 12 O -0.568 6.568 13 N -0.718 5.718 14 C 0.133 3.867 15 C 0.053 3.947 16 N -0.539 5.539 17 C 0.025 3.975 18 C 0.061 3.939 19 C 0.439 3.561 20 O -0.616 6.616 21 N -0.574 5.574 22 C -0.331 4.331 23 H 0.077 0.923 24 C -0.013 4.013 25 N -0.920 5.920 26 Si 0.991 3.009 27 H -0.275 1.275 28 H -0.271 1.271 29 H -0.271 1.271 30 H 0.047 0.953 31 H 0.049 0.951 32 H 0.063 0.937 33 H 0.059 0.941 34 H 0.059 0.941 35 H 0.058 0.942 36 H 0.059 0.941 37 H 0.075 0.925 38 H 0.052 0.948 39 H 0.075 0.925 40 H 0.036 0.964 41 H 0.082 0.918 42 H 0.095 0.905 43 H 0.414 0.586 44 H 0.051 0.949 45 H 0.053 0.947 46 H 0.060 0.940 47 H 0.098 0.902 48 H 0.033 0.967 49 H 0.073 0.927 50 H 0.056 0.944 51 H 0.073 0.927 52 H 0.115 0.885 53 H 0.397 0.603 54 H 0.277 0.723 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.922 17.018 -16.337 30.877 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.172 4.172 3 C -0.078 4.078 4 H 0.110 0.890 5 C -0.166 4.166 6 C -0.155 4.155 7 C -0.161 4.161 8 C -0.143 4.143 9 C -0.121 4.121 10 H 0.135 0.865 11 C 0.303 3.697 12 O -0.447 6.447 13 N -0.371 5.371 14 C 0.008 3.992 15 C -0.075 4.075 16 N -0.264 5.264 17 C -0.123 4.123 18 C -0.070 4.070 19 C 0.227 3.773 20 O -0.503 6.503 21 N -0.212 5.212 22 C -0.461 4.461 23 H 0.095 0.905 24 C -0.213 4.213 25 N -0.561 5.561 26 Si 0.815 3.185 27 H -0.200 1.200 28 H -0.196 1.196 29 H -0.196 1.196 30 H 0.066 0.934 31 H 0.068 0.932 32 H 0.082 0.918 33 H 0.077 0.923 34 H 0.078 0.922 35 H 0.077 0.923 36 H 0.077 0.923 37 H 0.094 0.906 38 H 0.071 0.929 39 H 0.094 0.906 40 H 0.055 0.945 41 H 0.101 0.899 42 H 0.114 0.886 43 H 0.251 0.749 44 H 0.069 0.931 45 H 0.071 0.929 46 H 0.078 0.922 47 H 0.116 0.884 48 H 0.052 0.948 49 H 0.091 0.909 50 H 0.074 0.926 51 H 0.091 0.909 52 H 0.133 0.867 53 H 0.231 0.769 54 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -20.947 15.888 -15.170 30.354 hybrid contribution 1.427 0.111 0.493 1.513 sum -19.521 15.999 -14.678 29.197 Atomic orbital electron populations 1.21755 0.95558 1.01306 1.01821 1.21786 0.96358 0.96975 1.02032 1.20938 0.92495 0.95957 0.98448 0.88981 1.21818 1.00355 0.95835 0.98586 1.21536 0.95693 0.96411 1.01844 1.21573 0.96144 1.00994 0.97435 1.21567 1.01760 0.92311 0.98624 1.21505 0.96625 0.97346 0.96673 0.86471 1.21173 0.81719 0.79209 0.87593 1.90603 1.60521 1.49777 1.43799 1.45851 1.07141 1.56898 1.27240 1.21011 0.92648 0.96349 0.89200 1.22245 0.92971 0.97899 0.94358 1.61340 1.12526 1.49500 1.03061 1.22453 1.01535 0.95897 0.92365 1.21745 0.88517 0.98149 0.98630 1.20841 0.82183 0.85973 0.88316 1.90477 1.56943 1.59701 1.43131 1.41923 1.08185 1.41946 1.29144 1.19670 0.93957 1.23041 1.09394 0.90503 1.26002 0.95531 0.99706 1.00027 1.69669 1.05668 1.45205 1.35545 0.84895 0.77972 0.77851 0.77762 1.20003 1.19617 1.19585 0.93358 0.93191 0.91763 0.92268 0.92226 0.92299 0.92256 0.90595 0.92916 0.90623 0.94518 0.89938 0.88637 0.74895 0.93063 0.92875 0.92171 0.88413 0.94820 0.90885 0.92571 0.90934 0.86710 0.76935 0.91333 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.24 9.67 71.98 0.70 -1.55 16 2 C -0.13 -2.35 5.03 30.59 0.15 -2.20 16 3 C -0.06 -0.85 1.93 -10.80 -0.02 -0.87 16 4 H 0.09 0.95 8.14 -2.39 -0.02 0.93 16 5 C -0.13 -2.22 4.69 30.59 0.14 -2.08 16 6 C -0.12 -1.59 5.92 30.59 0.18 -1.40 16 7 C -0.12 -1.56 5.70 30.59 0.17 -1.38 16 8 C -0.11 -0.88 5.36 30.59 0.16 -0.71 16 9 C -0.10 -1.23 2.54 -11.54 -0.03 -1.26 16 10 H 0.12 0.96 8.14 -2.39 -0.02 0.94 16 11 C 0.51 10.11 5.36 87.66 0.47 10.57 16 12 O -0.57 -16.16 11.36 -3.02 -0.03 -16.19 16 13 N -0.72 -11.85 5.45 -463.05 -2.52 -14.37 16 14 C 0.13 3.01 5.61 86.38 0.48 3.49 16 15 C 0.05 1.11 5.07 86.30 0.44 1.55 16 16 N -0.54 -16.93 4.50 -927.03 -4.17 -21.10 16 17 C 0.03 0.82 9.01 127.69 1.15 1.97 16 18 C 0.06 2.00 5.45 85.56 0.47 2.47 16 19 C 0.44 20.79 7.51 87.66 0.66 21.45 16 20 O -0.62 -34.31 13.88 -3.08 -0.04 -34.36 16 21 N -0.57 -29.27 5.29 -306.98 -1.62 -30.89 16 22 C -0.33 -18.84 9.68 84.04 0.81 -18.02 16 23 H 0.08 4.70 7.16 -2.91 -0.02 4.68 16 24 C -0.01 -0.70 5.50 84.93 0.47 -0.23 16 25 N -0.92 -49.32 13.05 21.66 0.28 -49.04 16 26 Si 0.99 43.15 29.55 68.60 2.03 45.18 16 27 H -0.28 -12.21 7.11 99.48 0.71 -11.50 16 28 H -0.27 -11.29 7.11 99.48 0.71 -10.58 16 29 H -0.27 -11.25 7.11 99.48 0.71 -10.54 16 30 H 0.05 0.74 8.14 -2.39 -0.02 0.72 16 31 H 0.05 0.81 6.56 -2.39 -0.02 0.79 16 32 H 0.06 0.76 8.14 -2.39 -0.02 0.74 16 33 H 0.06 0.93 8.14 -2.39 -0.02 0.91 16 34 H 0.06 1.47 5.64 -2.39 -0.01 1.46 16 35 H 0.06 0.98 6.56 -2.39 -0.02 0.97 16 36 H 0.06 1.46 5.51 -2.39 -0.01 1.45 16 37 H 0.08 0.77 8.14 -2.39 -0.02 0.75 16 38 H 0.05 0.77 8.14 -2.39 -0.02 0.75 16 39 H 0.08 0.77 8.14 -2.39 -0.02 0.75 16 40 H 0.04 0.65 7.22 -2.39 -0.02 0.63 16 41 H 0.08 0.45 7.56 -2.39 -0.02 0.43 16 42 H 0.10 0.47 8.14 -2.39 -0.02 0.45 16 43 H 0.41 3.94 7.89 -92.71 -0.73 3.21 16 44 H 0.05 1.45 8.14 -2.39 -0.02 1.43 16 45 H 0.05 1.38 6.47 -2.39 -0.02 1.36 16 46 H 0.06 1.02 8.12 -2.39 -0.02 1.00 16 47 H 0.10 1.71 7.93 -2.39 -0.02 1.69 16 48 H 0.03 0.94 8.14 -2.39 -0.02 0.92 16 49 H 0.07 2.15 6.30 -2.39 -0.02 2.14 16 50 H 0.06 2.31 5.88 -2.38 -0.01 2.30 16 51 H 0.07 2.09 8.12 -2.38 -0.02 2.07 16 52 H 0.11 3.22 7.93 -2.39 -0.02 3.21 16 53 H 0.40 19.01 7.90 -92.70 -0.73 18.28 16 54 H 0.28 13.88 8.31 -92.71 -0.77 13.11 16 Total: -1.00 -73.28 409.07 -0.24 -73.51 By element: Atomic # 1 Polarization: 36.02 SS G_CDS: -0.56 Total: 35.45 kcal Atomic # 6 Polarization: 5.40 SS G_CDS: 6.41 Total: 11.81 kcal Atomic # 7 Polarization: -107.37 SS G_CDS: -8.03 Total: -115.40 kcal Atomic # 8 Polarization: -50.47 SS G_CDS: -0.08 Total: -50.55 kcal Atomic # 14 Polarization: 43.15 SS G_CDS: 2.03 Total: 45.18 kcal Total: -73.28 -0.24 -73.51 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001480930209.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -39.797 kcal (2) G-P(sol) polarization free energy of solvation -73.277 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -113.074 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.237 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.514 kcal (6) G-S(sol) free energy of system = (1) + (5) -113.312 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds