Wall clock time and date at job start Sat Apr 11 2020 05:50:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53000 * 109.47215 * 2 1 4 4 H 1.08995 * 109.46995 * 305.00235 * 3 2 1 5 5 C 1.53000 * 109.47000 * 65.00369 * 3 2 1 6 6 C 1.53000 * 109.47000 * 179.97438 * 5 3 2 7 7 C 1.53005 * 109.47060 * 299.99813 * 6 5 3 8 8 C 1.53000 * 109.46694 * 60.00152 * 7 6 5 9 9 C 1.52996 * 109.46942 * 185.00253 * 3 2 1 10 10 H 1.08997 * 109.47429 * 300.00338 * 9 3 2 11 11 C 1.50701 * 109.47147 * 60.00591 * 9 3 2 12 12 O 1.21284 * 120.00192 * 7.59687 * 11 9 3 13 13 N 1.34785 * 120.00008 * 187.60569 * 11 9 3 14 14 C 1.46496 * 119.99801 * 6.10617 * 13 11 9 15 15 C 1.46497 * 119.99656 * 186.10878 * 13 11 9 16 16 C 1.53001 * 109.47065 * 90.00059 * 15 13 11 17 17 N 1.46905 * 109.46894 * 179.97438 * 16 15 13 18 18 C 1.46904 * 110.99812 * 180.02562 * 17 16 15 19 19 C 1.50699 * 109.47152 * 180.02562 * 18 17 16 20 20 O 1.21294 * 119.99897 * 359.97438 * 19 18 17 21 21 N 1.34770 * 120.00032 * 179.97438 * 19 18 17 22 22 C 1.37101 * 119.99811 * 179.97438 * 21 19 18 23 23 H 1.07995 * 120.00064 * 359.97438 * 22 21 19 24 24 C 1.38958 * 119.99659 * 180.02562 * 22 21 19 25 25 N 1.31415 * 119.99724 * 179.97438 * 24 22 21 26 26 Si 1.86790 * 120.00066 * 359.97438 * 24 22 21 27 27 H 1.48506 * 109.46939 * 90.00301 * 26 24 22 28 28 H 1.48502 * 109.47119 * 210.00334 * 26 24 22 29 29 H 1.48502 * 109.47242 * 330.00275 * 26 24 22 30 30 H 1.08999 * 109.47692 * 180.02562 * 1 2 3 31 31 H 1.09003 * 109.46831 * 299.99464 * 1 2 3 32 32 H 1.08999 * 109.47730 * 59.99296 * 1 2 3 33 33 H 1.08996 * 109.47251 * 120.00885 * 2 1 3 34 34 H 1.09003 * 109.46831 * 240.00536 * 2 1 3 35 35 H 1.08999 * 109.47390 * 300.00147 * 5 3 2 36 36 H 1.08997 * 109.46849 * 59.99981 * 5 3 2 37 37 H 1.08997 * 109.47335 * 60.00279 * 6 5 3 38 38 H 1.09003 * 109.46947 * 180.02562 * 6 5 3 39 39 H 1.09000 * 109.46819 * 179.97438 * 7 6 5 40 40 H 1.08997 * 109.47427 * 300.00409 * 7 6 5 41 41 H 1.09006 * 109.47093 * 60.00132 * 8 7 6 42 42 H 1.09009 * 109.46859 * 179.97438 * 8 7 6 43 43 H 1.08999 * 109.47074 * 84.33454 * 14 13 11 44 44 H 1.09003 * 109.46863 * 204.33688 * 14 13 11 45 45 H 1.08997 * 109.47240 * 324.33518 * 14 13 11 46 46 H 1.08998 * 109.47006 * 209.99693 * 15 13 11 47 47 H 1.08996 * 109.47753 * 329.99387 * 15 13 11 48 48 H 1.09004 * 109.46599 * 299.99397 * 16 15 13 49 49 H 1.08992 * 109.47305 * 59.99609 * 16 15 13 50 50 H 1.00896 * 111.00122 * 56.04232 * 17 16 15 51 51 H 1.09001 * 109.46668 * 299.99194 * 18 17 16 52 52 H 1.08995 * 109.47497 * 59.99436 * 18 17 16 53 53 H 0.96996 * 120.00524 * 359.97438 * 21 19 18 54 54 H 0.96998 * 119.99688 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9815 -0.8418 5 6 1.6353 2.1265 1.3074 6 6 2.1459 3.5688 1.3077 7 6 3.6708 3.5700 1.1822 8 6 4.0754 2.8860 -0.1252 9 6 3.5648 1.4442 -0.1258 10 1 3.9994 0.9052 0.7159 11 6 3.9634 0.7706 -1.4136 12 8 3.1150 0.4559 -2.2212 13 7 5.2626 0.5176 -1.6678 14 6 6.2736 0.7740 -0.6390 15 6 5.6637 -0.0136 -2.9728 16 6 5.9679 1.1457 -3.9237 17 7 6.3707 0.6129 -5.2322 18 6 6.6719 1.7001 -6.1732 19 6 7.0797 1.1163 -7.5013 20 8 7.1163 -0.0870 -7.6493 21 7 7.4037 1.9312 -8.5246 22 6 7.7752 1.4001 -9.7327 23 1 7.8086 0.3287 -9.8642 24 6 8.1098 2.2404 -10.7877 25 7 8.4664 1.7313 -11.9455 26 14 8.0527 4.0935 -10.5599 27 1 9.3744 4.5746 -10.0836 28 1 7.7276 4.7417 -11.8559 29 1 7.0107 4.4374 -9.5593 30 1 -0.3634 -1.0276 0.0005 31 1 -0.3633 0.5138 0.8901 32 1 -0.3634 0.5139 -0.8899 33 1 1.8933 -0.5139 0.8899 34 1 1.8933 -0.5138 -0.8901 35 1 0.5490 2.1252 1.3971 36 1 2.0700 1.5874 2.1491 37 1 1.7116 4.1081 0.4659 38 1 1.8580 4.0559 2.2393 39 1 4.0344 4.5975 1.1819 40 1 4.1051 3.0306 2.0239 41 1 3.6411 3.4254 -0.9670 42 1 5.1618 2.8872 -0.2148 43 1 6.3352 -0.0831 0.0315 44 1 7.2418 0.9347 -1.1132 45 1 5.9961 1.6612 -0.0699 46 1 6.5545 -0.6307 -2.8556 47 1 4.8547 -0.6178 -3.3834 48 1 5.0770 1.7628 -4.0409 49 1 6.7769 1.7498 -3.5131 50 1 5.6638 -0.0030 -5.6050 51 1 5.7860 2.3211 -6.3064 52 1 7.4856 2.3079 -5.7777 53 1 7.3741 2.8935 -8.4065 54 1 8.6996 2.3179 -12.6820 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001481297603.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:50:39 Heat of formation + Delta-G solvation = -110.440701 kcal Electronic energy + Delta-G solvation = -30059.222284 eV Core-core repulsion = 26029.189620 eV Total energy + Delta-G solvation = -4030.032665 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 339.231 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -41.67751 -40.34602 -39.04128 -37.47341 -36.35116 -35.81263 -34.69045 -33.77705 -32.52179 -30.67412 -29.93941 -28.17965 -27.34267 -25.73229 -24.76826 -24.16238 -22.99191 -21.61340 -21.35267 -20.92753 -20.35312 -19.92720 -18.08440 -17.89502 -17.34031 -17.15408 -16.70542 -16.41758 -16.08009 -15.77983 -15.61304 -15.40386 -15.02928 -14.96792 -14.84805 -14.59409 -14.55478 -14.24962 -14.09409 -13.87709 -13.71763 -13.49255 -13.46748 -13.33941 -13.04869 -12.87227 -12.73357 -12.51023 -12.43368 -12.38480 -12.15910 -12.04942 -11.99522 -11.80549 -11.63883 -11.53598 -11.42028 -11.29586 -10.85947 -10.52181 -10.41896 -10.27383 -9.65649 -9.46122 -8.43138 -6.04409 1.29082 1.34330 1.43427 1.60126 1.91250 1.95416 2.21614 2.74482 3.12460 3.36670 3.51473 3.65611 3.75243 3.94960 4.04795 4.10309 4.13665 4.16946 4.30098 4.30563 4.36728 4.38580 4.44311 4.46782 4.47486 4.51636 4.53010 4.59800 4.67665 4.75386 4.79915 4.81635 4.92799 4.94332 4.96307 5.03853 5.18234 5.21012 5.21932 5.28264 5.35545 5.36342 5.42540 5.47967 5.53737 5.55793 5.62096 5.84494 5.97004 6.22454 6.41282 6.56896 6.85111 7.19741 7.36358 7.92496 8.74457 Molecular weight = 339.23amu Principal moments of inertia in cm(-1) A = 0.017510 B = 0.001915 C = 0.001874 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1598.662111 B =14620.452498 C =14937.144596 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.127 4.127 3 C -0.063 4.063 4 H 0.049 0.951 5 C -0.110 4.110 6 C -0.124 4.124 7 C -0.112 4.112 8 C -0.114 4.114 9 C -0.093 4.093 10 H 0.116 0.884 11 C 0.509 3.491 12 O -0.578 6.578 13 N -0.613 5.613 14 C 0.058 3.942 15 C 0.120 3.880 16 C 0.058 3.942 17 N -0.680 5.680 18 C 0.064 3.936 19 C 0.448 3.552 20 O -0.614 6.614 21 N -0.589 5.589 22 C -0.330 4.330 23 H 0.055 0.945 24 C -0.016 4.016 25 N -0.933 5.933 26 Si 0.967 3.033 27 H -0.254 1.254 28 H -0.274 1.274 29 H -0.233 1.233 30 H 0.051 0.949 31 H 0.069 0.931 32 H 0.039 0.961 33 H 0.067 0.933 34 H 0.050 0.950 35 H 0.067 0.933 36 H 0.076 0.924 37 H 0.050 0.950 38 H 0.075 0.925 39 H 0.074 0.926 40 H 0.081 0.919 41 H 0.048 0.952 42 H 0.091 0.909 43 H 0.070 0.930 44 H 0.086 0.914 45 H 0.099 0.901 46 H 0.097 0.903 47 H 0.058 0.942 48 H 0.020 0.980 49 H 0.092 0.908 50 H 0.342 0.658 51 H 0.070 0.930 52 H 0.120 0.880 53 H 0.390 0.610 54 H 0.280 0.720 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.297 8.736 36.692 39.098 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.165 4.165 3 C -0.082 4.082 4 H 0.068 0.932 5 C -0.147 4.147 6 C -0.161 4.161 7 C -0.150 4.150 8 C -0.151 4.151 9 C -0.114 4.114 10 H 0.134 0.866 11 C 0.299 3.701 12 O -0.457 6.457 13 N -0.345 5.345 14 C -0.083 4.083 15 C -0.004 4.004 16 C -0.072 4.072 17 N -0.313 5.313 18 C -0.069 4.069 19 C 0.236 3.764 20 O -0.498 6.498 21 N -0.231 5.231 22 C -0.460 4.460 23 H 0.073 0.927 24 C -0.215 4.215 25 N -0.573 5.573 26 Si 0.786 3.214 27 H -0.178 1.178 28 H -0.199 1.199 29 H -0.157 1.157 30 H 0.070 0.930 31 H 0.088 0.912 32 H 0.058 0.942 33 H 0.086 0.914 34 H 0.068 0.932 35 H 0.086 0.914 36 H 0.094 0.906 37 H 0.069 0.931 38 H 0.094 0.906 39 H 0.092 0.908 40 H 0.099 0.901 41 H 0.067 0.933 42 H 0.109 0.891 43 H 0.089 0.911 44 H 0.105 0.895 45 H 0.117 0.883 46 H 0.116 0.884 47 H 0.077 0.923 48 H 0.038 0.962 49 H 0.111 0.889 50 H 0.160 0.840 51 H 0.087 0.913 52 H 0.138 0.862 53 H 0.226 0.774 54 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -9.973 7.690 36.158 38.288 hybrid contribution -0.833 0.676 -1.441 1.797 sum -10.806 8.366 34.717 37.310 Atomic orbital electron populations 1.21747 0.95570 1.01468 1.01653 1.21682 0.96512 0.96619 1.01654 1.20910 0.92670 0.96146 0.98504 0.93240 1.21620 1.01185 0.95782 0.96111 1.21587 0.96126 0.96364 1.02025 1.21522 0.95715 1.01134 0.96592 1.21697 1.01824 0.92331 0.99269 1.21397 0.97725 0.97790 0.94492 0.86644 1.21380 0.81710 0.77834 0.89205 1.90670 1.50787 1.53560 1.50705 1.47917 1.07315 1.64614 1.14687 1.22384 0.91717 1.03208 0.90962 1.21231 1.01018 0.95343 0.82828 1.22247 0.99169 0.96982 0.88782 1.60037 1.49623 1.18493 1.03098 1.21621 1.02511 0.93605 0.89124 1.20920 0.81901 0.86972 0.86657 1.90545 1.58028 1.17031 1.84226 1.42015 1.62178 1.08329 1.10570 1.19014 1.44461 0.93980 0.88498 0.92678 1.26150 0.95798 1.05561 0.93961 1.69807 1.45556 1.38489 1.03488 0.85343 0.80489 0.76033 0.79510 1.17840 1.19949 1.15685 0.92980 0.91204 0.94172 0.91447 0.93176 0.91407 0.90574 0.93138 0.90621 0.90764 0.90070 0.93277 0.89121 0.91130 0.89490 0.88293 0.88446 0.92325 0.96170 0.88944 0.83972 0.91255 0.86183 0.77431 0.91078 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.35 9.67 71.98 0.70 -1.66 16 2 C -0.13 -2.23 5.14 30.59 0.16 -2.07 16 3 C -0.06 -0.97 1.34 -10.80 -0.01 -0.99 16 4 H 0.05 1.04 8.02 -2.39 -0.02 1.02 16 5 C -0.11 -1.08 4.96 30.59 0.15 -0.93 16 6 C -0.12 -1.04 5.92 30.60 0.18 -0.86 16 7 C -0.11 -0.73 5.92 30.60 0.18 -0.55 16 8 C -0.11 -1.13 4.88 30.58 0.15 -0.99 16 9 C -0.09 -1.23 1.24 -11.56 -0.01 -1.25 16 10 H 0.12 1.02 7.74 -2.39 -0.02 1.01 16 11 C 0.51 10.61 6.48 87.66 0.57 11.18 16 12 O -0.58 -17.52 13.56 -3.04 -0.04 -17.56 16 13 N -0.61 -10.55 2.87 -846.76 -2.43 -12.98 16 14 C 0.06 0.48 9.87 127.77 1.26 1.75 16 15 C 0.12 2.61 5.69 86.38 0.49 3.10 16 16 C 0.06 1.36 6.01 86.30 0.52 1.88 16 17 N -0.68 -21.24 6.13 -517.92 -3.17 -24.41 16 18 C 0.06 2.05 6.17 85.56 0.53 2.58 16 19 C 0.45 20.87 7.82 87.66 0.69 21.56 16 20 O -0.61 -35.07 15.78 -3.07 -0.05 -35.11 16 21 N -0.59 -28.45 5.09 -306.99 -1.56 -30.01 16 22 C -0.33 -19.72 10.16 84.04 0.85 -18.87 16 23 H 0.06 3.91 7.39 -2.91 -0.02 3.89 16 24 C -0.02 -0.90 5.50 84.93 0.47 -0.43 16 25 N -0.93 -56.85 13.96 21.67 0.30 -56.55 16 26 Si 0.97 39.21 27.74 68.60 1.90 41.11 16 27 H -0.25 -9.68 7.11 99.48 0.71 -8.97 16 28 H -0.27 -11.04 7.11 99.48 0.71 -10.33 16 29 H -0.23 -8.04 6.52 99.48 0.65 -7.39 16 30 H 0.05 0.80 8.14 -2.39 -0.02 0.78 16 31 H 0.07 0.85 6.57 -2.39 -0.02 0.84 16 32 H 0.04 0.74 8.14 -2.39 -0.02 0.72 16 33 H 0.07 0.96 8.14 -2.39 -0.02 0.94 16 34 H 0.05 1.23 5.70 -2.39 -0.01 1.21 16 35 H 0.07 0.67 6.57 -2.39 -0.02 0.66 16 36 H 0.08 0.56 8.14 -2.39 -0.02 0.54 16 37 H 0.05 0.55 8.14 -2.39 -0.02 0.53 16 38 H 0.08 0.47 8.14 -2.39 -0.02 0.45 16 39 H 0.07 0.40 8.14 -2.39 -0.02 0.39 16 40 H 0.08 0.30 8.14 -2.39 -0.02 0.28 16 41 H 0.05 0.70 8.14 -2.38 -0.02 0.68 16 42 H 0.09 0.62 5.33 -2.38 -0.01 0.61 16 43 H 0.07 0.44 8.14 -2.39 -0.02 0.42 16 44 H 0.09 0.60 8.03 -2.39 -0.02 0.59 16 45 H 0.10 0.44 4.23 -2.39 -0.01 0.43 16 46 H 0.10 1.93 8.07 -2.39 -0.02 1.91 16 47 H 0.06 1.61 7.35 -2.39 -0.02 1.59 16 48 H 0.02 0.52 8.14 -2.38 -0.02 0.50 16 49 H 0.09 1.77 8.14 -2.39 -0.02 1.75 16 50 H 0.34 11.92 8.43 -89.70 -0.76 11.16 16 51 H 0.07 1.94 8.14 -2.39 -0.02 1.92 16 52 H 0.12 3.13 8.14 -2.39 -0.02 3.11 16 53 H 0.39 15.55 5.76 -92.71 -0.53 15.01 16 54 H 0.28 15.53 8.31 -92.71 -0.77 14.76 16 Total: -1.00 -82.39 414.09 1.36 -81.04 By element: Atomic # 1 Polarization: 41.47 SS G_CDS: -0.45 Total: 41.02 kcal Atomic # 6 Polarization: 6.60 SS G_CDS: 6.86 Total: 13.46 kcal Atomic # 7 Polarization: -117.09 SS G_CDS: -6.87 Total: -123.96 kcal Atomic # 8 Polarization: -52.58 SS G_CDS: -0.09 Total: -52.67 kcal Atomic # 14 Polarization: 39.21 SS G_CDS: 1.90 Total: 41.11 kcal Total: -82.39 1.36 -81.04 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001481297603.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -29.404 kcal (2) G-P(sol) polarization free energy of solvation -82.392 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -111.796 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.355 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.037 kcal (6) G-S(sol) free energy of system = (1) + (5) -110.441 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds