Wall clock time and date at job start Sat Apr 11 2020 05:50:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53004 * 109.47007 * 2 1 4 4 H 1.08996 * 109.47132 * 54.99679 * 3 2 1 5 5 C 1.53007 * 109.46938 * 295.00245 * 3 2 1 6 6 C 1.52997 * 109.46995 * 180.02562 * 5 3 2 7 7 C 1.52999 * 109.47349 * 59.99480 * 6 5 3 8 8 C 1.52993 * 109.47359 * 300.00301 * 7 6 5 9 9 C 1.52993 * 109.47384 * 59.99799 * 8 7 6 10 10 H 1.09001 * 109.47647 * 180.02562 * 9 8 7 11 11 C 1.50703 * 109.47229 * 59.99986 * 9 8 7 12 12 O 1.21279 * 120.00103 * 240.00209 * 11 9 8 13 13 N 1.34774 * 119.99692 * 60.00028 * 11 9 8 14 14 C 1.46503 * 120.00231 * 0.02562 * 13 11 9 15 15 C 1.46503 * 119.99620 * 180.02562 * 13 11 9 16 16 C 1.52993 * 109.47198 * 269.99866 * 15 13 11 17 17 N 1.46901 * 109.46980 * 180.02562 * 16 15 13 18 18 C 1.46902 * 110.99844 * 179.97438 * 17 16 15 19 19 C 1.50702 * 109.47027 * 179.97438 * 18 17 16 20 20 O 1.21293 * 120.00255 * 0.02562 * 19 18 17 21 21 N 1.34783 * 120.00004 * 180.02562 * 19 18 17 22 22 C 1.37092 * 119.99804 * 180.02562 * 21 19 18 23 23 H 1.08002 * 120.00499 * 0.02562 * 22 21 19 24 24 C 1.38956 * 119.99671 * 179.72159 * 22 21 19 25 25 N 1.31414 * 120.00152 * 0.27554 * 24 22 21 26 26 Si 1.86803 * 119.99914 * 180.27723 * 24 22 21 27 27 H 1.48498 * 109.47174 * 90.00084 * 26 24 22 28 28 H 1.48501 * 109.47062 * 210.00035 * 26 24 22 29 29 H 1.48504 * 109.46913 * 329.99834 * 26 24 22 30 30 H 1.08996 * 109.47036 * 299.99914 * 1 2 3 31 31 H 1.08998 * 109.47099 * 59.99813 * 1 2 3 32 32 H 1.09004 * 109.46844 * 180.02562 * 1 2 3 33 33 H 1.08996 * 109.47036 * 240.00085 * 2 1 3 34 34 H 1.09001 * 109.47359 * 119.99477 * 2 1 3 35 35 H 1.09002 * 109.47069 * 59.99738 * 5 3 2 36 36 H 1.08996 * 109.46746 * 299.99670 * 5 3 2 37 37 H 1.09010 * 109.46945 * 299.99912 * 6 5 3 38 38 H 1.08997 * 109.46898 * 180.02562 * 6 5 3 39 39 H 1.09004 * 109.46975 * 180.02562 * 7 6 5 40 40 H 1.09001 * 109.46747 * 60.00567 * 7 6 5 41 41 H 1.09010 * 109.47198 * 299.99729 * 8 7 6 42 42 H 1.09000 * 109.47450 * 180.02562 * 8 7 6 43 43 H 1.08997 * 109.47047 * 269.99856 * 14 13 11 44 44 H 1.08996 * 109.46991 * 29.99683 * 14 13 11 45 45 H 1.08997 * 109.46907 * 150.00137 * 14 13 11 46 46 H 1.09006 * 109.46894 * 150.00165 * 15 13 11 47 47 H 1.08997 * 109.47291 * 30.00619 * 15 13 11 48 48 H 1.08997 * 109.47529 * 60.00390 * 16 15 13 49 49 H 1.08999 * 109.47191 * 299.99920 * 16 15 13 50 50 H 1.00895 * 111.00207 * 303.95322 * 17 16 15 51 51 H 1.09004 * 109.47131 * 60.00016 * 18 17 16 52 52 H 1.08994 * 109.47471 * 299.99766 * 18 17 16 53 53 H 0.97000 * 119.99715 * 359.97438 * 21 19 18 54 54 H 0.96991 * 119.99827 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9816 0.8417 5 6 1.6351 2.1266 -1.3074 6 6 2.1457 3.5689 -1.3077 7 6 3.6705 3.5702 -1.1822 8 6 4.0753 2.8862 0.1251 9 6 3.5649 1.4440 0.1254 10 1 3.8529 0.9567 1.0569 11 6 4.1653 0.6983 -1.0385 12 8 3.4445 0.2136 -1.8849 13 7 5.5032 0.5702 -1.1387 14 6 6.3738 1.1553 -0.1160 15 6 6.0868 -0.1542 -2.2705 16 6 6.2290 -1.6342 -1.9101 17 7 6.8148 -2.3604 -3.0447 18 6 6.9671 -3.7881 -2.7339 19 6 7.5690 -4.4987 -3.9188 20 8 7.8445 -3.8770 -4.9231 21 7 7.8012 -5.8252 -3.8624 22 6 8.3493 -6.4715 -4.9401 23 1 8.5953 -5.9177 -5.8341 24 6 8.5940 -7.8380 -4.8798 25 7 8.2952 -8.5117 -3.7918 26 14 9.3479 -8.7173 -6.3454 27 1 10.8280 -8.6986 -6.2262 28 1 8.8716 -10.1235 -6.3777 29 1 8.9433 -8.0288 -7.5975 30 1 -0.3633 0.5138 0.8900 31 1 -0.3633 0.5138 -0.8899 32 1 -0.3633 -1.0277 0.0005 33 1 1.8933 -0.5138 -0.8900 34 1 1.8934 -0.5137 0.8900 35 1 0.5488 2.1252 -1.3969 36 1 2.0698 1.5876 -2.1491 37 1 1.7114 4.1082 -0.4658 38 1 1.8568 4.0563 -2.2388 39 1 4.0341 4.5978 -1.1820 40 1 4.1047 3.0310 -2.0241 41 1 3.6410 3.4255 0.9670 42 1 5.1616 2.8876 0.2147 43 1 6.6332 2.1752 -0.3999 44 1 5.8531 1.1660 0.8415 45 1 7.2827 0.5601 -0.0288 46 1 7.0688 0.2600 -2.4994 47 1 5.4380 -0.0527 -3.1404 48 1 5.2471 -2.0484 -1.6812 49 1 6.8779 -1.7356 -1.0402 50 1 6.2656 -2.2286 -3.8808 51 1 5.9904 -4.2176 -2.5108 52 1 7.6211 -3.9041 -1.8697 53 1 7.5813 -6.3223 -3.0590 54 1 8.4657 -9.4656 -3.7500 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001481297604.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:50:42 Heat of formation + Delta-G solvation = -108.889524 kcal Electronic energy + Delta-G solvation = -30384.366164 eV Core-core repulsion = 26354.400763 eV Total energy + Delta-G solvation = -4029.965401 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 339.231 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -41.92350 -40.20120 -38.75705 -37.29104 -36.37696 -35.79241 -34.65440 -33.30845 -32.47219 -30.56562 -29.88597 -28.10805 -27.36757 -25.87003 -24.74554 -24.13669 -22.95962 -21.66138 -21.49883 -21.09327 -19.96678 -19.62696 -17.96325 -17.75139 -17.13423 -16.93993 -16.81860 -16.47218 -16.09959 -15.90902 -15.58572 -15.34752 -15.11277 -14.90448 -14.66534 -14.53657 -14.46994 -14.14578 -13.86710 -13.77110 -13.61393 -13.53832 -13.32775 -13.23678 -12.94637 -12.83216 -12.75799 -12.57749 -12.43833 -12.34257 -12.27247 -12.13115 -12.08439 -11.85439 -11.67922 -11.52980 -11.45438 -10.89129 -10.78121 -10.41856 -10.24890 -10.04439 -9.61803 -9.45151 -8.48631 -5.97770 1.37001 1.40746 1.53878 1.70719 1.98318 2.01383 2.28758 2.96162 3.18076 3.46335 3.56973 3.71368 3.79172 3.95032 4.06448 4.15027 4.19483 4.23873 4.28019 4.34064 4.37453 4.44168 4.47581 4.48212 4.54523 4.55026 4.60372 4.64013 4.72303 4.77262 4.80943 4.84414 4.91617 4.96824 4.98557 5.05267 5.10576 5.17953 5.27913 5.31793 5.34127 5.36136 5.38965 5.50428 5.51607 5.54739 5.73454 5.82114 6.03695 6.25478 6.48189 6.57049 7.09766 7.29840 7.52446 8.07572 8.68817 Molecular weight = 339.23amu Principal moments of inertia in cm(-1) A = 0.020113 B = 0.001896 C = 0.001821 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1391.817312 B =14761.285335 C =15374.163532 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.133 4.133 3 C -0.059 4.059 4 H 0.092 0.908 5 C -0.128 4.128 6 C -0.117 4.117 7 C -0.121 4.121 8 C -0.117 4.117 9 C -0.100 4.100 10 H 0.114 0.886 11 C 0.513 3.487 12 O -0.567 6.567 13 N -0.614 5.614 14 C 0.067 3.933 15 C 0.125 3.875 16 C 0.057 3.943 17 N -0.676 5.676 18 C 0.067 3.933 19 C 0.437 3.563 20 O -0.622 6.622 21 N -0.572 5.572 22 C -0.335 4.335 23 H 0.079 0.921 24 C -0.014 4.014 25 N -0.920 5.920 26 Si 0.995 3.005 27 H -0.269 1.269 28 H -0.270 1.270 29 H -0.273 1.273 30 H 0.064 0.936 31 H 0.049 0.951 32 H 0.046 0.954 33 H 0.058 0.942 34 H 0.057 0.943 35 H 0.057 0.943 36 H 0.058 0.942 37 H 0.076 0.924 38 H 0.052 0.948 39 H 0.077 0.923 40 H 0.033 0.967 41 H 0.095 0.905 42 H 0.093 0.907 43 H 0.076 0.924 44 H 0.094 0.906 45 H 0.080 0.920 46 H 0.096 0.904 47 H 0.059 0.941 48 H 0.018 0.982 49 H 0.086 0.914 50 H 0.342 0.658 51 H 0.059 0.941 52 H 0.109 0.891 53 H 0.397 0.603 54 H 0.278 0.722 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.049 24.993 17.262 32.321 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.171 4.171 3 C -0.078 4.078 4 H 0.110 0.890 5 C -0.166 4.166 6 C -0.154 4.154 7 C -0.159 4.159 8 C -0.154 4.154 9 C -0.121 4.121 10 H 0.132 0.868 11 C 0.303 3.697 12 O -0.446 6.446 13 N -0.346 5.346 14 C -0.075 4.075 15 C 0.001 3.999 16 C -0.073 4.073 17 N -0.308 5.308 18 C -0.066 4.066 19 C 0.225 3.775 20 O -0.509 6.509 21 N -0.209 5.209 22 C -0.464 4.464 23 H 0.097 0.903 24 C -0.214 4.214 25 N -0.561 5.561 26 Si 0.818 3.182 27 H -0.195 1.195 28 H -0.195 1.195 29 H -0.198 1.198 30 H 0.083 0.917 31 H 0.068 0.932 32 H 0.065 0.935 33 H 0.076 0.924 34 H 0.076 0.924 35 H 0.076 0.924 36 H 0.076 0.924 37 H 0.094 0.906 38 H 0.071 0.929 39 H 0.095 0.905 40 H 0.052 0.948 41 H 0.113 0.887 42 H 0.111 0.889 43 H 0.094 0.906 44 H 0.112 0.888 45 H 0.099 0.901 46 H 0.115 0.885 47 H 0.078 0.922 48 H 0.036 0.964 49 H 0.105 0.895 50 H 0.160 0.840 51 H 0.077 0.923 52 H 0.127 0.873 53 H 0.230 0.770 54 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -10.562 25.112 16.389 31.792 hybrid contribution -0.693 -1.535 -0.740 1.840 sum -11.255 23.576 15.649 30.453 Atomic orbital electron populations 1.21756 0.95568 1.01258 1.01860 1.21779 0.96346 0.97074 1.01879 1.20933 0.92556 0.95808 0.98454 0.88999 1.21812 1.00277 0.95940 0.98531 1.21533 0.95800 0.96278 1.01833 1.21540 0.96015 1.00964 0.97373 1.21836 1.02877 0.92079 0.98641 1.21474 0.96465 0.97557 0.96558 0.86792 1.21257 0.81605 0.79176 0.87639 1.90595 1.60157 1.50100 1.43793 1.47936 1.06278 1.54604 1.25821 1.22274 0.95020 0.99203 0.90996 1.21171 0.99412 0.90433 0.88917 1.22245 0.96989 0.94106 0.93939 1.60050 1.55949 1.08525 1.06269 1.21520 1.00394 0.88552 0.96110 1.20803 0.83909 0.82494 0.90318 1.90489 1.58223 1.66702 1.35478 1.41928 1.55665 1.06936 1.16388 1.19681 1.39215 0.91944 0.95607 0.90278 1.26085 0.97617 0.96656 1.01017 1.69673 1.48100 1.09721 1.28583 0.84900 0.78486 0.77320 0.77454 1.19458 1.19472 1.19809 0.91664 0.93174 0.93486 0.92378 0.92424 0.92398 0.92363 0.90569 0.92933 0.90465 0.94773 0.88677 0.88860 0.90584 0.88758 0.90133 0.88524 0.92240 0.96378 0.89534 0.83977 0.92306 0.87332 0.76952 0.91231 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.45 9.67 71.98 0.70 -1.76 16 2 C -0.13 -2.52 5.03 30.60 0.15 -2.37 16 3 C -0.06 -0.89 1.93 -10.79 -0.02 -0.91 16 4 H 0.09 1.03 8.14 -2.39 -0.02 1.01 16 5 C -0.13 -2.33 4.69 30.60 0.14 -2.19 16 6 C -0.12 -1.64 5.92 30.59 0.18 -1.46 16 7 C -0.12 -1.56 5.70 30.59 0.17 -1.39 16 8 C -0.12 -1.02 5.09 30.59 0.16 -0.86 16 9 C -0.10 -1.31 1.74 -11.54 -0.02 -1.33 16 10 H 0.11 1.06 7.40 -2.39 -0.02 1.05 16 11 C 0.51 10.58 5.28 87.66 0.46 11.05 16 12 O -0.57 -16.59 10.94 -3.02 -0.03 -16.62 16 13 N -0.61 -10.87 2.87 -846.77 -2.43 -13.30 16 14 C 0.07 0.60 8.80 127.77 1.12 1.72 16 15 C 0.12 2.84 5.67 86.38 0.49 3.33 16 16 C 0.06 1.48 6.01 86.30 0.52 2.00 16 17 N -0.68 -22.75 6.13 -517.94 -3.17 -25.92 16 18 C 0.07 2.43 6.17 85.56 0.53 2.96 16 19 C 0.44 21.62 7.82 87.66 0.69 22.30 16 20 O -0.62 -35.63 15.78 -3.07 -0.05 -35.68 16 21 N -0.57 -30.22 5.29 -306.97 -1.62 -31.85 16 22 C -0.33 -19.45 9.68 84.04 0.81 -18.63 16 23 H 0.08 4.89 7.16 -2.91 -0.02 4.87 16 24 C -0.01 -0.76 5.50 84.93 0.47 -0.29 16 25 N -0.92 -50.36 13.05 21.67 0.28 -50.07 16 26 Si 1.00 43.57 29.55 68.60 2.03 45.60 16 27 H -0.27 -11.39 7.11 99.48 0.71 -10.68 16 28 H -0.27 -11.16 7.11 99.48 0.71 -10.45 16 29 H -0.27 -12.05 7.11 99.48 0.71 -11.34 16 30 H 0.06 0.85 8.14 -2.39 -0.02 0.83 16 31 H 0.05 0.88 6.56 -2.39 -0.02 0.86 16 32 H 0.05 0.80 8.14 -2.38 -0.02 0.78 16 33 H 0.06 1.53 5.64 -2.39 -0.01 1.52 16 34 H 0.06 0.99 8.14 -2.39 -0.02 0.97 16 35 H 0.06 1.03 6.56 -2.39 -0.02 1.01 16 36 H 0.06 1.50 5.51 -2.39 -0.01 1.48 16 37 H 0.08 0.80 8.14 -2.38 -0.02 0.78 16 38 H 0.05 0.79 8.14 -2.39 -0.02 0.77 16 39 H 0.08 0.77 8.14 -2.38 -0.02 0.75 16 40 H 0.03 0.63 7.22 -2.39 -0.02 0.61 16 41 H 0.09 0.48 8.14 -2.38 -0.02 0.46 16 42 H 0.09 0.54 4.53 -2.39 -0.01 0.53 16 43 H 0.08 0.48 6.95 -2.39 -0.02 0.46 16 44 H 0.09 0.46 6.01 -2.39 -0.01 0.45 16 45 H 0.08 0.67 8.07 -2.39 -0.02 0.65 16 46 H 0.10 2.00 8.07 -2.38 -0.02 1.98 16 47 H 0.06 1.65 7.42 -2.39 -0.02 1.63 16 48 H 0.02 0.52 8.14 -2.39 -0.02 0.50 16 49 H 0.09 1.94 8.14 -2.39 -0.02 1.92 16 50 H 0.34 12.54 8.43 -89.70 -0.76 11.78 16 51 H 0.06 1.98 8.14 -2.38 -0.02 1.96 16 52 H 0.11 3.47 8.14 -2.39 -0.02 3.45 16 53 H 0.40 19.86 7.90 -92.71 -0.73 19.12 16 54 H 0.28 14.21 8.31 -92.71 -0.77 13.44 16 Total: -1.00 -73.50 409.09 0.97 -72.53 By element: Atomic # 1 Polarization: 43.74 SS G_CDS: -0.58 Total: 43.16 kcal Atomic # 6 Polarization: 5.60 SS G_CDS: 6.55 Total: 12.16 kcal Atomic # 7 Polarization: -114.20 SS G_CDS: -6.95 Total: -121.14 kcal Atomic # 8 Polarization: -52.22 SS G_CDS: -0.08 Total: -52.30 kcal Atomic # 14 Polarization: 43.57 SS G_CDS: 2.03 Total: 45.60 kcal Total: -73.50 0.97 -72.53 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001481297604.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -36.363 kcal (2) G-P(sol) polarization free energy of solvation -73.496 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -109.860 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.970 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.526 kcal (6) G-S(sol) free energy of system = (1) + (5) -108.890 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds