Wall clock time and date at job start Sat Apr 11 2020 05:50:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53002 * 109.46974 * 2 1 4 4 H 1.08995 * 109.47121 * 54.99845 * 3 2 1 5 5 C 1.53007 * 109.46866 * 295.00098 * 3 2 1 6 6 C 1.52999 * 109.47283 * 175.00369 * 3 2 1 7 7 C 1.50701 * 109.47111 * 185.00304 * 6 3 2 8 8 O 1.21281 * 119.99905 * 359.97438 * 7 6 3 9 9 N 1.34777 * 119.99991 * 179.97438 * 7 6 3 10 10 C 1.46502 * 119.99942 * 179.97438 * 9 7 6 11 11 C 1.53513 * 114.16704 * 204.99849 * 10 9 7 12 12 N 1.47484 * 87.93060 * 220.32609 * 11 10 9 13 13 C 1.46895 * 110.99756 * 138.70311 * 12 11 10 14 14 C 1.50706 * 109.47182 * 170.00145 * 13 12 11 15 15 O 1.21283 * 119.99503 * 0.02562 * 14 13 12 16 16 N 1.34773 * 120.00081 * 179.72734 * 14 13 12 17 17 C 1.46492 * 120.00231 * 359.97438 * 16 14 13 18 18 C 1.53002 * 109.47540 * 90.00038 * 17 16 14 19 19 C 1.46506 * 119.99968 * 180.02562 * 16 14 13 20 20 C 1.50699 * 109.47352 * 89.99400 * 19 16 14 21 21 H 1.08000 * 119.99828 * 0.02562 * 20 19 16 22 22 C 1.37870 * 120.00146 * 179.97438 * 20 19 16 23 23 N 1.31516 * 119.99841 * 0.02562 * 22 20 19 24 24 Si 1.86801 * 120.00215 * 180.02562 * 22 20 19 25 25 H 1.48502 * 109.47166 * 60.00152 * 24 22 20 26 26 H 1.48506 * 109.47069 * 180.02562 * 24 22 20 27 27 H 1.48501 * 109.47159 * 299.99829 * 24 22 20 28 28 C 1.47477 * 87.83167 * 27.01125 * 12 11 10 29 29 H 1.09004 * 109.46907 * 180.02562 * 1 2 3 30 30 H 1.08995 * 109.47376 * 299.99742 * 1 2 3 31 31 H 1.08997 * 109.47527 * 60.00291 * 1 2 3 32 32 H 1.08995 * 109.47376 * 240.00258 * 2 1 3 33 33 H 1.08997 * 109.47527 * 119.99709 * 2 1 3 34 34 H 1.08995 * 109.47044 * 299.99794 * 5 3 2 35 35 H 1.08996 * 109.47166 * 60.00291 * 5 3 2 36 36 H 1.09005 * 109.46763 * 179.97438 * 5 3 2 37 37 H 1.08998 * 109.47550 * 64.99571 * 6 3 2 38 38 H 1.09005 * 109.46975 * 304.99587 * 6 3 2 39 39 H 0.96992 * 120.00120 * 359.97438 * 9 7 6 40 40 H 1.09003 * 113.37948 * 338.07305 * 10 9 7 41 41 H 1.09005 * 113.47855 * 105.56484 * 11 10 9 42 42 H 1.08997 * 113.47719 * 335.09509 * 11 10 9 43 43 H 1.09001 * 109.47613 * 50.00491 * 13 12 11 44 44 H 1.08998 * 109.47678 * 290.00386 * 13 12 11 45 45 H 1.08999 * 109.47479 * 210.00762 * 17 16 14 46 46 H 1.09006 * 109.47080 * 330.00171 * 17 16 14 47 47 H 1.09000 * 109.46885 * 300.00184 * 18 17 16 48 48 H 1.09001 * 109.46388 * 60.00135 * 18 17 16 49 49 H 1.08990 * 109.47469 * 179.97438 * 18 17 16 50 50 H 1.08995 * 109.47161 * 210.00105 * 19 16 14 51 51 H 1.09002 * 109.46900 * 329.99415 * 19 16 14 52 52 H 0.97007 * 120.00044 * 180.02562 * 23 22 20 53 53 H 1.09000 * 113.48071 * 87.76093 * 28 12 11 54 54 H 1.09004 * 113.47566 * 218.21901 * 28 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.6053 1.9815 0.8418 5 6 1.6351 2.1265 -1.3074 6 6 3.5648 1.4444 0.1256 7 6 4.0568 2.8635 0.2492 8 8 3.2658 3.7828 0.2375 9 7 5.3759 3.1110 0.3728 10 6 5.8543 4.4905 0.4924 11 6 7.3035 4.6955 0.0294 12 7 7.4877 5.5973 1.1818 13 6 8.7929 5.3774 1.8189 14 6 9.0503 6.4681 2.8265 15 8 8.2271 7.3423 2.9973 16 7 10.1924 6.4688 3.5420 17 6 11.1835 5.4090 3.3407 18 6 12.1682 5.8321 2.2489 19 6 10.4423 7.5289 4.5219 20 6 9.8982 7.1111 5.8637 21 1 9.4150 6.1517 5.9755 22 6 10.0182 7.9531 6.9488 23 7 10.6071 9.1212 6.8127 24 14 9.3444 7.4350 8.6122 25 1 10.0168 6.1859 9.0514 26 1 9.5977 8.5096 9.6054 27 1 7.8826 7.1979 8.5021 28 6 6.4279 4.8394 1.8728 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3634 0.5138 0.8900 31 1 -0.3634 0.5138 -0.8900 32 1 1.8933 -0.5138 -0.8900 33 1 1.8934 -0.5138 0.8900 34 1 2.0697 1.5875 -2.1492 35 1 0.5488 2.1252 -1.3969 36 1 1.9980 3.1544 -1.3072 37 1 4.0029 0.9837 -0.7597 38 1 3.8571 0.8802 1.0113 39 1 6.0085 2.3758 0.3826 40 1 5.1524 5.2271 0.1014 41 1 7.3846 5.1996 -0.9337 42 1 7.9091 3.7909 0.0847 43 1 9.5750 5.3922 1.0598 44 1 8.7934 4.4105 2.3221 45 1 11.7246 5.2361 4.2710 46 1 10.6782 4.4916 3.0386 47 1 11.6270 6.0049 1.3186 48 1 12.6735 6.7494 2.5511 49 1 12.9059 5.0438 2.0995 50 1 11.5151 7.7031 4.6031 51 1 9.9488 8.4456 4.1992 52 1 10.6919 9.7135 7.5762 53 1 6.7998 3.9733 2.4202 54 1 5.7668 5.4654 2.4722 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001481553141.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:50:59 Heat of formation + Delta-G solvation = -75.434882 kcal Electronic energy + Delta-G solvation = -29676.623753 eV Core-core repulsion = 25648.109054 eV Total energy + Delta-G solvation = -4028.514699 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 339.231 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -41.82534 -40.68859 -39.86800 -37.23398 -36.87668 -35.16052 -34.87267 -32.06340 -31.59500 -31.07347 -29.14428 -28.42367 -26.99684 -26.17651 -24.95418 -24.43136 -23.65189 -21.66488 -21.31639 -20.57727 -19.94250 -18.64034 -18.00156 -17.97227 -17.82590 -16.95897 -16.74071 -16.52778 -16.32668 -16.01733 -15.72763 -15.38735 -15.10129 -14.91509 -14.66425 -14.49402 -14.28942 -14.14671 -13.76837 -13.68666 -13.56771 -13.40492 -13.25787 -13.13459 -12.92712 -12.78548 -12.73765 -12.63234 -12.50888 -12.34012 -12.16982 -12.14814 -11.92597 -11.79476 -11.73658 -11.71790 -11.51989 -11.37539 -10.76669 -10.65734 -10.57737 -10.04537 -9.82092 -9.40784 -8.23269 -6.38447 1.33472 1.38664 1.45581 1.66870 1.89447 2.05764 2.30769 2.43302 3.05418 3.07812 3.41766 3.66667 3.76765 3.83926 3.89570 4.01964 4.02927 4.08802 4.19906 4.29674 4.32273 4.38731 4.46163 4.48119 4.64771 4.65403 4.66759 4.71998 4.76241 4.77172 4.85552 4.91962 4.94415 4.96702 5.00656 5.05994 5.16270 5.21019 5.21909 5.25878 5.27021 5.33829 5.41021 5.44959 5.56572 5.57439 5.62357 5.84542 5.94850 6.06292 6.60708 6.69910 6.85410 7.28124 7.33782 7.57122 8.83361 Molecular weight = 339.23amu Principal moments of inertia in cm(-1) A = 0.013685 B = 0.002037 C = 0.001868 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2045.615043 B =13745.670089 C =14985.597939 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C -0.114 4.114 3 C -0.079 4.079 4 H 0.050 0.950 5 C -0.152 4.152 6 C -0.129 4.129 7 C 0.507 3.493 8 O -0.582 6.582 9 N -0.705 5.705 10 C 0.130 3.870 11 C 0.008 3.992 12 N -0.483 5.483 13 C 0.020 3.980 14 C 0.493 3.507 15 O -0.587 6.587 16 N -0.607 5.607 17 C 0.100 3.900 18 C -0.161 4.161 19 C 0.264 3.736 20 C -0.541 4.541 21 H 0.053 0.947 22 C 0.005 3.995 23 N -0.928 5.928 24 Si 0.967 3.033 25 H -0.257 1.257 26 H -0.278 1.278 27 H -0.280 1.280 28 C -0.014 4.014 29 H 0.062 0.938 30 H 0.044 0.956 31 H 0.053 0.947 32 H 0.076 0.924 33 H 0.071 0.929 34 H 0.063 0.937 35 H 0.052 0.948 36 H 0.044 0.956 37 H 0.123 0.877 38 H 0.117 0.883 39 H 0.420 0.580 40 H 0.100 0.900 41 H 0.102 0.898 42 H 0.114 0.886 43 H 0.131 0.869 44 H 0.101 0.899 45 H 0.070 0.930 46 H 0.104 0.896 47 H 0.061 0.939 48 H 0.034 0.966 49 H 0.097 0.903 50 H 0.021 0.979 51 H -0.010 1.010 52 H 0.267 0.733 53 H 0.092 0.908 54 H 0.049 0.951 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.581 -26.234 -18.787 33.146 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C -0.151 4.151 3 C -0.098 4.098 4 H 0.069 0.931 5 C -0.209 4.209 6 C -0.169 4.169 7 C 0.296 3.704 8 O -0.461 6.461 9 N -0.358 5.358 10 C 0.023 3.977 11 C -0.120 4.120 12 N -0.206 5.206 13 C -0.111 4.111 14 C 0.282 3.718 15 O -0.467 6.467 16 N -0.339 5.339 17 C -0.022 4.022 18 C -0.219 4.219 19 C 0.142 3.858 20 C -0.580 4.580 21 H 0.071 0.929 22 C -0.194 4.194 23 N -0.568 5.568 24 Si 0.792 3.208 25 H -0.181 1.181 26 H -0.203 1.203 27 H -0.206 1.206 28 C -0.145 4.145 29 H 0.081 0.919 30 H 0.063 0.937 31 H 0.073 0.927 32 H 0.095 0.905 33 H 0.090 0.910 34 H 0.082 0.918 35 H 0.071 0.929 36 H 0.063 0.937 37 H 0.141 0.859 38 H 0.135 0.865 39 H 0.258 0.742 40 H 0.118 0.882 41 H 0.121 0.879 42 H 0.132 0.868 43 H 0.148 0.852 44 H 0.118 0.882 45 H 0.088 0.912 46 H 0.122 0.878 47 H 0.080 0.920 48 H 0.053 0.947 49 H 0.116 0.884 50 H 0.039 0.961 51 H 0.008 0.992 52 H 0.075 0.925 53 H 0.110 0.890 54 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges -8.492 -24.242 -18.678 31.760 hybrid contribution 0.105 -0.048 1.576 1.581 sum -8.388 -24.290 -17.102 30.868 Atomic orbital electron populations 1.21838 0.96197 1.01890 1.01544 1.21551 0.95828 0.94700 1.03026 1.20912 0.93661 0.96835 0.98357 0.93094 1.21948 1.01228 1.00704 0.97002 1.21826 0.96917 0.91521 1.06613 1.21505 0.81985 0.92800 0.74155 1.90699 1.55808 1.48484 1.51108 1.45827 1.07891 1.07931 1.74128 1.22219 0.95563 0.84981 0.94972 1.24317 0.94015 0.97204 0.96514 1.68709 1.02888 1.42644 1.06344 1.22643 0.95039 0.96138 0.97299 1.21295 0.81021 0.87389 0.82125 1.90651 1.46454 1.40883 1.68701 1.48309 1.19156 1.27881 1.38545 1.21756 0.90523 0.89851 1.00094 1.22162 0.99492 1.02151 0.98120 1.18640 0.94973 0.85923 0.86269 1.21675 1.38147 1.03290 0.94896 0.92892 1.25896 0.95416 0.94753 1.03359 1.70055 1.44241 1.10018 1.32501 0.85476 0.78497 0.78565 0.78308 1.18093 1.20338 1.20615 1.24470 0.95034 0.96980 0.97999 0.91868 0.93682 0.92749 0.90505 0.91020 0.91831 0.92885 0.93660 0.85919 0.86528 0.74156 0.88234 0.87925 0.86846 0.85168 0.88175 0.91171 0.87839 0.91997 0.94689 0.88392 0.96096 0.99164 0.92454 0.88987 0.93184 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.65 9.67 71.98 0.70 -0.96 16 2 C -0.11 -1.02 5.40 30.59 0.17 -0.86 16 3 C -0.08 -1.07 2.04 -10.79 -0.02 -1.09 16 4 H 0.05 0.97 7.95 -2.39 -0.02 0.96 16 5 C -0.15 -2.40 8.69 71.98 0.63 -1.78 16 6 C -0.13 -1.25 5.17 29.85 0.15 -1.09 16 7 C 0.51 9.14 7.55 87.66 0.66 9.80 16 8 O -0.58 -16.72 13.56 -3.03 -0.04 -16.76 16 9 N -0.70 -9.60 5.39 -441.69 -2.38 -11.97 16 10 C 0.13 2.64 4.59 45.44 0.21 2.84 16 11 C 0.01 0.13 7.45 83.57 0.62 0.75 16 12 N -0.48 -13.38 5.82 -932.63 -5.43 -18.81 16 13 C 0.02 0.53 3.86 85.56 0.33 0.86 16 14 C 0.49 20.92 7.74 87.66 0.68 21.60 16 15 O -0.59 -32.52 16.01 -3.04 -0.05 -32.57 16 16 N -0.61 -25.75 2.46 -826.15 -2.03 -27.78 16 17 C 0.10 2.87 5.94 86.38 0.51 3.39 16 18 C -0.16 -3.72 10.24 71.98 0.74 -2.98 16 19 C 0.26 14.63 5.16 85.63 0.44 15.07 16 20 C -0.54 -31.91 9.39 25.60 0.24 -31.67 16 21 H 0.05 3.06 7.81 -2.91 -0.02 3.04 16 22 C 0.00 0.27 5.46 84.65 0.46 0.73 16 23 N -0.93 -57.59 13.29 21.44 0.28 -57.30 16 24 Si 0.97 45.84 29.54 68.60 2.03 47.87 16 25 H -0.26 -11.24 7.11 99.48 0.71 -10.53 16 26 H -0.28 -12.75 7.11 99.48 0.71 -12.04 16 27 H -0.28 -13.39 7.11 99.48 0.71 -12.68 16 28 C -0.01 -0.38 7.52 83.57 0.63 0.25 16 29 H 0.06 0.53 8.14 -2.38 -0.02 0.51 16 30 H 0.04 0.55 8.14 -2.39 -0.02 0.53 16 31 H 0.05 0.60 6.56 -2.39 -0.02 0.58 16 32 H 0.08 0.50 8.14 -2.39 -0.02 0.48 16 33 H 0.07 0.53 8.14 -2.39 -0.02 0.51 16 34 H 0.06 0.77 8.14 -2.39 -0.02 0.75 16 35 H 0.05 0.82 6.56 -2.39 -0.02 0.81 16 36 H 0.04 1.00 5.95 -2.38 -0.01 0.99 16 37 H 0.12 0.51 8.14 -2.39 -0.02 0.49 16 38 H 0.12 0.63 8.14 -2.38 -0.02 0.61 16 39 H 0.42 2.24 8.75 -92.71 -0.81 1.43 16 40 H 0.10 2.68 7.46 -2.39 -0.02 2.67 16 41 H 0.10 1.53 8.14 -2.38 -0.02 1.51 16 42 H 0.11 0.90 7.90 -2.39 -0.02 0.88 16 43 H 0.13 2.55 7.14 -2.39 -0.02 2.53 16 44 H 0.10 1.99 6.55 -2.39 -0.02 1.98 16 45 H 0.07 2.19 8.07 -2.39 -0.02 2.17 16 46 H 0.10 2.09 6.43 -2.38 -0.02 2.08 16 47 H 0.06 1.29 7.23 -2.39 -0.02 1.28 16 48 H 0.03 0.99 8.14 -2.39 -0.02 0.97 16 49 H 0.10 1.54 8.14 -2.39 -0.02 1.52 16 50 H 0.02 1.18 8.07 -2.39 -0.02 1.16 16 51 H -0.01 -0.64 7.43 -2.39 -0.02 -0.65 16 52 H 0.27 15.53 8.31 -92.70 -0.77 14.76 16 53 H 0.09 1.95 7.42 -2.39 -0.02 1.94 16 54 H 0.05 1.74 8.14 -2.38 -0.02 1.72 16 Total: -1.00 -89.14 428.39 -0.41 -89.55 By element: Atomic # 1 Polarization: 12.85 SS G_CDS: 0.06 Total: 12.91 kcal Atomic # 6 Polarization: 7.73 SS G_CDS: 7.14 Total: 14.87 kcal Atomic # 7 Polarization: -106.32 SS G_CDS: -9.55 Total: -115.87 kcal Atomic # 8 Polarization: -49.24 SS G_CDS: -0.09 Total: -49.33 kcal Atomic # 14 Polarization: 45.84 SS G_CDS: 2.03 Total: 47.87 kcal Total: -89.14 -0.41 -89.55 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001481553141.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.111 kcal (2) G-P(sol) polarization free energy of solvation -89.135 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -75.024 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.411 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -89.546 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.435 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds