Wall clock time and date at job start Sat Apr 11 2020 05:51:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53002 * 109.46986 * 2 1 4 4 C 1.50698 * 109.47115 * 180.02562 * 3 2 1 5 5 O 1.21281 * 119.99689 * 359.97438 * 4 3 2 6 6 N 1.34774 * 120.00254 * 180.02562 * 4 3 2 7 7 C 1.46927 * 120.62692 * 0.02562 * 6 4 3 8 8 C 1.53193 * 108.77663 * 233.59122 * 7 6 4 9 9 C 1.53046 * 109.31028 * 305.36644 * 8 7 6 10 10 C 1.53046 * 109.53579 * 61.36644 * 9 8 7 11 11 H 1.09004 * 109.49895 * 58.58445 * 10 9 8 12 12 C 1.50703 * 109.49368 * 178.65033 * 10 9 8 13 13 O 1.21275 * 119.99964 * 120.00115 * 12 10 9 14 14 N 1.34777 * 119.99659 * 299.99614 * 12 10 9 15 15 C 1.46503 * 119.99638 * 180.02562 * 14 12 10 16 16 C 1.53003 * 109.47051 * 180.02562 * 15 14 12 17 17 H 1.08999 * 109.46766 * 294.99752 * 16 15 14 18 18 C 1.53000 * 109.46645 * 175.00063 * 16 15 14 19 19 C 1.53008 * 109.46638 * 175.00176 * 18 16 15 20 20 N 1.46497 * 109.47021 * 54.99979 * 16 15 14 21 21 C 1.36932 * 119.99946 * 204.99601 * 20 16 15 22 22 H 1.07998 * 120.00199 * 0.02562 * 21 20 16 23 23 C 1.38815 * 119.99865 * 180.02562 * 21 20 16 24 24 N 1.31620 * 120.00288 * 0.02562 * 23 21 20 25 25 Si 1.86799 * 119.99717 * 180.02562 * 23 21 20 26 26 H 1.48500 * 109.47645 * 59.99642 * 25 23 21 27 27 H 1.48502 * 109.46924 * 179.97438 * 25 23 21 28 28 H 1.48502 * 109.47317 * 299.99763 * 25 23 21 29 29 C 1.46919 * 120.63129 * 180.02562 * 6 4 3 30 30 H 1.09002 * 109.47025 * 180.02562 * 1 2 3 31 31 H 1.09006 * 109.47127 * 299.99793 * 1 2 3 32 32 H 1.08997 * 109.47595 * 59.99682 * 1 2 3 33 33 H 1.09006 * 109.46629 * 240.00029 * 2 1 3 34 34 H 1.08998 * 109.46791 * 119.99872 * 2 1 3 35 35 H 1.08998 * 109.47230 * 59.99875 * 3 2 1 36 36 H 1.09000 * 109.46827 * 299.99903 * 3 2 1 37 37 H 1.09000 * 109.58699 * 353.37880 * 7 6 4 38 38 H 1.08997 * 109.58189 * 113.66082 * 7 6 4 39 39 H 1.09001 * 109.49998 * 185.42005 * 8 7 6 40 40 H 1.08998 * 109.50010 * 65.31705 * 8 7 6 41 41 H 1.08993 * 109.46296 * 301.34732 * 9 8 7 42 42 H 1.09000 * 109.45696 * 181.38288 * 9 8 7 43 43 H 0.96998 * 120.00372 * 0.02562 * 14 12 10 44 44 H 1.09002 * 109.47388 * 299.99915 * 15 14 12 45 45 H 1.09002 * 109.47059 * 60.00179 * 15 14 12 46 46 H 1.08997 * 109.47467 * 294.99551 * 18 16 15 47 47 H 1.08998 * 109.47858 * 55.00322 * 18 16 15 48 48 H 1.08997 * 109.47126 * 60.00035 * 19 18 16 49 49 H 1.09001 * 109.46850 * 179.97438 * 19 18 16 50 50 H 1.08993 * 109.47008 * 299.99508 * 19 18 16 51 51 H 0.97007 * 120.00100 * 24.99970 * 20 16 15 52 52 H 0.96993 * 120.00178 * 180.02562 * 24 23 21 53 53 H 1.09002 * 109.59216 * 6.61793 * 29 6 4 54 54 H 1.09004 * 109.70105 * 246.26484 * 29 6 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5470 1.4426 -0.0006 5 8 4.1533 0.3922 -0.0006 6 7 4.2209 2.6097 -0.0002 7 6 3.5002 3.8901 0.0014 8 6 4.0076 4.7430 -1.1656 9 6 5.5291 4.8779 -1.0698 10 6 6.1729 3.4929 -1.1680 11 1 5.8883 3.0254 -2.1107 12 6 7.6724 3.6299 -1.1069 13 8 8.2954 3.0859 -0.2199 14 7 8.3212 4.3568 -2.0381 15 6 9.7790 4.4895 -1.9790 16 6 10.2595 5.3592 -3.1425 17 1 10.0542 4.8512 -4.0848 18 6 11.7646 5.6009 -3.0108 19 6 12.2677 6.3643 -4.2376 20 7 9.5546 6.6431 -3.1160 21 6 9.4063 7.3667 -4.2691 22 1 9.8087 6.9907 -5.1981 23 6 8.7388 8.5835 -4.2439 24 7 8.2488 9.0421 -3.1116 25 14 8.5359 9.5702 -5.8170 26 1 7.7801 8.7669 -6.8113 27 1 7.7920 10.8216 -5.5239 28 1 9.8739 9.9064 -6.3665 29 6 5.6900 2.6259 -0.0014 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3634 0.5138 0.8900 32 1 -0.3634 0.5139 -0.8899 33 1 1.8933 -0.5139 -0.8901 34 1 1.8933 -0.5138 0.8900 35 1 1.6766 1.9564 0.8899 36 1 1.6766 1.9563 -0.8900 37 1 2.4320 3.7083 -0.1163 38 1 3.6810 4.4098 0.9423 39 1 3.5512 5.7318 -1.1191 40 1 3.7435 4.2638 -2.1083 41 1 5.7939 5.3346 -0.1163 42 1 5.8901 5.5048 -1.8852 43 1 7.8229 4.7922 -2.7474 44 1 10.0635 4.9557 -1.0357 45 1 10.2368 3.5027 -2.0493 46 1 11.9614 6.1863 -2.1127 47 1 12.2816 4.6438 -2.9412 48 1 11.7508 7.3213 -4.3072 49 1 13.3399 6.5369 -4.1436 50 1 12.0710 5.7789 -5.1357 51 1 9.1928 6.9808 -2.2817 52 1 7.7820 9.8922 -3.0941 53 1 6.0666 1.6100 -0.1209 54 1 6.0536 3.0422 0.9381 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001481880484.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:51:07 Heat of formation + Delta-G solvation = -110.272000 kcal Electronic energy + Delta-G solvation = -30529.160471 eV Core-core repulsion = 26499.135121 eV Total energy + Delta-G solvation = -4030.025349 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 339.231 amu Computer time = 1.85 seconds Orbital eigenvalues (eV) -41.64177 -40.60695 -38.54861 -37.99518 -35.35905 -35.29684 -34.31646 -33.83313 -32.33109 -31.48193 -29.67955 -28.85259 -26.20733 -25.93175 -24.98051 -23.66258 -22.91962 -22.10430 -21.61250 -20.80370 -19.91722 -19.22579 -18.41602 -17.72467 -17.24101 -16.93403 -16.80408 -16.69558 -16.25924 -15.80893 -15.45383 -15.40763 -15.14624 -14.96009 -14.73122 -14.60769 -14.43182 -14.11695 -13.98857 -13.84053 -13.68134 -13.62903 -12.97820 -12.87220 -12.77422 -12.73760 -12.65241 -12.56803 -12.35492 -12.20988 -12.13298 -12.00914 -11.87515 -11.81967 -11.67575 -11.61611 -11.60771 -11.32517 -10.95820 -10.86717 -10.69838 -10.03043 -9.71843 -8.95083 -7.84836 -5.11651 1.52124 1.53650 1.58201 1.58718 1.59496 1.84543 2.37968 2.61651 3.45654 3.48234 3.60428 3.74667 3.81776 3.90519 3.96653 3.98909 4.04344 4.12995 4.14934 4.20803 4.37926 4.45467 4.48108 4.54624 4.56376 4.64513 4.71029 4.72350 4.75301 4.77411 4.82402 4.84943 4.88174 4.92388 5.08142 5.09342 5.12657 5.15028 5.20723 5.26045 5.29581 5.33404 5.43057 5.47610 5.50736 5.57176 5.63464 5.71751 6.35035 6.39398 6.56924 7.13889 7.21861 7.43481 8.13955 8.40295 9.37458 Molecular weight = 339.23amu Principal moments of inertia in cm(-1) A = 0.014031 B = 0.002501 C = 0.002221 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1995.080398 B =11192.439369 C =12606.046922 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.111 4.111 3 C -0.131 4.131 4 C 0.505 3.495 5 O -0.593 6.593 6 N -0.610 5.610 7 C 0.101 3.899 8 C -0.127 4.127 9 C -0.109 4.109 10 C -0.107 4.107 11 H 0.106 0.894 12 C 0.516 3.484 13 O -0.587 6.587 14 N -0.706 5.706 15 C 0.122 3.878 16 C 0.166 3.834 17 H 0.058 0.942 18 C -0.130 4.130 19 C -0.142 4.142 20 N -0.725 5.725 21 C -0.217 4.217 22 H 0.077 0.923 23 C -0.068 4.068 24 N -0.963 5.963 25 Si 0.956 3.044 26 H -0.279 1.279 27 H -0.303 1.303 28 H -0.286 1.286 29 C 0.140 3.860 30 H 0.056 0.944 31 H 0.066 0.934 32 H 0.066 0.934 33 H 0.050 0.950 34 H 0.050 0.950 35 H 0.120 0.880 36 H 0.120 0.880 37 H 0.123 0.877 38 H 0.081 0.919 39 H 0.101 0.899 40 H 0.075 0.925 41 H 0.063 0.937 42 H 0.068 0.932 43 H 0.411 0.589 44 H 0.050 0.950 45 H 0.075 0.925 46 H 0.045 0.955 47 H 0.072 0.928 48 H 0.049 0.951 49 H 0.051 0.949 50 H 0.049 0.951 51 H 0.373 0.627 52 H 0.247 0.753 53 H 0.068 0.932 54 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.481 -11.404 4.425 18.956 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.149 4.149 3 C -0.170 4.170 4 C 0.295 3.705 5 O -0.473 6.473 6 N -0.343 5.343 7 C -0.021 4.021 8 C -0.165 4.165 9 C -0.147 4.147 10 C -0.129 4.129 11 H 0.124 0.876 12 C 0.302 3.698 13 O -0.468 6.468 14 N -0.356 5.356 15 C -0.003 4.003 16 C 0.057 3.943 17 H 0.076 0.924 18 C -0.171 4.171 19 C -0.200 4.200 20 N -0.365 5.365 21 C -0.349 4.349 22 H 0.095 0.905 23 C -0.261 4.261 24 N -0.614 5.614 25 Si 0.787 3.213 26 H -0.205 1.205 27 H -0.230 1.230 28 H -0.213 1.213 29 C 0.016 3.984 30 H 0.075 0.925 31 H 0.085 0.915 32 H 0.085 0.915 33 H 0.069 0.931 34 H 0.069 0.931 35 H 0.138 0.862 36 H 0.138 0.862 37 H 0.141 0.859 38 H 0.099 0.901 39 H 0.119 0.881 40 H 0.094 0.906 41 H 0.082 0.918 42 H 0.087 0.913 43 H 0.248 0.752 44 H 0.069 0.931 45 H 0.094 0.906 46 H 0.064 0.936 47 H 0.091 0.909 48 H 0.068 0.932 49 H 0.070 0.930 50 H 0.068 0.932 51 H 0.205 0.795 52 H 0.056 0.944 53 H 0.087 0.913 54 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -13.719 -12.274 4.848 19.036 hybrid contribution 0.291 1.189 -0.749 1.435 sum -13.428 -11.085 4.100 17.888 Atomic orbital electron populations 1.21751 0.93388 1.02362 1.02886 1.21277 0.96912 0.94910 1.01833 1.21823 0.88202 1.00272 1.06705 1.21634 0.92109 0.82332 0.74382 1.90682 1.71754 1.32808 1.52077 1.48285 1.05906 1.07351 1.72749 1.22123 0.98125 0.82297 0.99517 1.21905 0.93525 1.01813 0.99208 1.21507 0.97123 0.93076 1.03042 1.21553 0.90253 0.99548 1.01576 0.87552 1.20843 0.90493 0.77577 0.80847 1.90657 1.70018 1.49321 1.36811 1.45958 1.08367 1.51167 1.30157 1.21564 0.80149 0.99659 0.98933 1.20684 0.91653 0.86191 0.95795 0.92443 1.21996 0.96778 0.99985 0.98322 1.21694 0.99725 1.01099 0.97462 1.42520 1.66085 1.19764 1.08173 1.19417 1.27109 0.99586 0.88814 0.90492 1.25309 1.02435 0.99534 0.98808 1.69781 1.44280 1.21454 1.25931 0.85471 0.77295 0.78077 0.80427 1.20550 1.22954 1.21293 1.21018 0.80267 0.99978 0.97175 0.92514 0.91482 0.91531 0.93148 0.93106 0.86192 0.86178 0.85945 0.90107 0.88092 0.90592 0.91836 0.91285 0.75208 0.93116 0.90637 0.93589 0.90905 0.93183 0.92953 0.93219 0.79451 0.94388 0.91309 0.91556 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.38 9.91 71.98 0.71 -0.67 16 2 C -0.11 -1.68 5.22 30.60 0.16 -1.52 16 3 C -0.13 -1.64 4.05 29.85 0.12 -1.52 16 4 C 0.50 11.43 7.70 87.66 0.67 12.10 16 5 O -0.59 -19.36 15.40 -3.03 -0.05 -19.41 16 6 N -0.61 -12.62 2.97 -818.97 -2.43 -15.06 16 7 C 0.10 1.28 6.34 86.36 0.55 1.83 16 8 C -0.13 -1.89 6.08 30.67 0.19 -1.70 16 9 C -0.11 -2.46 5.08 30.63 0.16 -2.31 16 10 C -0.11 -2.75 2.67 -11.47 -0.03 -2.78 16 11 H 0.11 2.55 8.14 -2.38 -0.02 2.54 16 12 C 0.52 16.78 7.16 87.66 0.63 17.41 16 13 O -0.59 -23.06 15.92 -3.01 -0.05 -23.11 16 14 N -0.71 -22.61 5.27 -463.05 -2.44 -25.06 16 15 C 0.12 4.00 5.23 86.38 0.45 4.45 16 16 C 0.17 5.79 2.59 44.99 0.12 5.91 16 17 H 0.06 2.00 8.08 -2.39 -0.02 1.98 16 18 C -0.13 -4.21 5.61 30.60 0.17 -4.04 16 19 C -0.14 -4.76 9.18 71.98 0.66 -4.10 16 20 N -0.72 -31.65 4.51 -322.95 -1.46 -33.10 16 21 C -0.22 -10.56 7.75 84.04 0.65 -9.91 16 22 H 0.08 3.62 7.32 -2.91 -0.02 3.60 16 23 C -0.07 -3.56 5.50 84.86 0.47 -3.10 16 24 N -0.96 -54.06 13.06 21.65 0.28 -53.78 16 25 Si 0.96 43.04 29.55 68.60 2.03 45.06 16 26 H -0.28 -12.07 7.11 99.48 0.71 -11.37 16 27 H -0.30 -14.06 7.11 99.48 0.71 -13.35 16 28 H -0.29 -12.72 7.11 99.48 0.71 -12.01 16 29 C 0.14 3.77 5.07 86.35 0.44 4.21 16 30 H 0.06 0.55 8.14 -2.39 -0.02 0.53 16 31 H 0.07 0.49 8.14 -2.38 -0.02 0.47 16 32 H 0.07 0.50 8.14 -2.39 -0.02 0.48 16 33 H 0.05 0.94 8.10 -2.38 -0.02 0.92 16 34 H 0.05 0.94 8.10 -2.39 -0.02 0.92 16 35 H 0.12 0.90 7.94 -2.39 -0.02 0.89 16 36 H 0.12 0.92 7.69 -2.39 -0.02 0.91 16 37 H 0.12 0.73 5.93 -2.39 -0.01 0.71 16 38 H 0.08 0.96 8.14 -2.39 -0.02 0.94 16 39 H 0.10 1.24 8.14 -2.39 -0.02 1.22 16 40 H 0.08 1.09 8.14 -2.39 -0.02 1.07 16 41 H 0.06 1.54 8.14 -2.39 -0.02 1.52 16 42 H 0.07 1.79 7.53 -2.39 -0.02 1.77 16 43 H 0.41 13.16 7.54 -92.71 -0.70 12.46 16 44 H 0.05 1.81 8.14 -2.39 -0.02 1.79 16 45 H 0.08 2.32 8.14 -2.39 -0.02 2.30 16 46 H 0.05 1.59 8.14 -2.39 -0.02 1.57 16 47 H 0.07 1.96 8.14 -2.39 -0.02 1.94 16 48 H 0.05 2.03 5.99 -2.39 -0.01 2.01 16 49 H 0.05 1.53 8.14 -2.39 -0.02 1.51 16 50 H 0.05 1.54 8.14 -2.39 -0.02 1.52 16 51 H 0.37 18.13 7.80 -92.70 -0.72 17.41 16 52 H 0.25 13.77 8.31 -92.71 -0.77 13.00 16 53 H 0.07 2.26 7.01 -2.39 -0.02 2.24 16 54 H 0.07 1.91 7.95 -2.38 -0.02 1.89 16 Total: -1.00 -68.28 422.43 1.45 -66.83 By element: Atomic # 1 Polarization: 43.90 SS G_CDS: -0.54 Total: 43.36 kcal Atomic # 6 Polarization: 8.14 SS G_CDS: 6.11 Total: 14.25 kcal Atomic # 7 Polarization: -120.94 SS G_CDS: -6.05 Total: -126.99 kcal Atomic # 8 Polarization: -42.42 SS G_CDS: -0.09 Total: -42.52 kcal Atomic # 14 Polarization: 43.04 SS G_CDS: 2.03 Total: 45.06 kcal Total: -68.28 1.45 -66.83 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001481880484.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -43.446 kcal (2) G-P(sol) polarization free energy of solvation -68.279 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -111.725 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.453 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.826 kcal (6) G-S(sol) free energy of system = (1) + (5) -110.272 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.85 seconds