Wall clock time and date at job start Sat Apr 11 2020 05:51:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.53002 * 109.46895 * 2 1 4 4 C 1.52993 * 109.47166 * 301.22407 * 3 2 1 5 5 C 1.53010 * 109.47120 * 294.73802 * 4 3 2 6 6 C 1.50701 * 109.47080 * 61.22296 * 3 2 1 7 7 O 1.21280 * 120.00125 * 239.99840 * 6 3 2 8 8 N 1.34777 * 119.99771 * 59.99771 * 6 3 2 9 9 C 1.46498 * 119.99725 * 179.72486 * 8 6 3 10 10 H 1.08994 * 109.47385 * 34.99721 * 9 8 6 11 11 C 1.52999 * 109.47212 * 155.00325 * 9 8 6 12 12 C 1.52999 * 109.47134 * 179.97438 * 11 9 8 13 13 C 1.52995 * 109.47358 * 299.99676 * 12 11 9 14 14 H 1.09000 * 109.47131 * 300.00264 * 13 12 11 15 15 N 1.46899 * 109.47455 * 179.97438 * 13 12 11 16 16 C 1.46906 * 110.99870 * 154.99816 * 15 13 12 17 17 C 1.50703 * 109.46775 * 179.97438 * 16 15 13 18 18 O 1.21292 * 120.00494 * 0.02562 * 17 16 15 19 19 N 1.34773 * 119.99763 * 179.97438 * 17 16 15 20 20 C 1.37104 * 119.99951 * 180.02562 * 19 17 16 21 21 H 1.07997 * 119.99903 * 359.97438 * 20 19 17 22 22 C 1.38953 * 119.99825 * 180.02562 * 20 19 17 23 23 N 1.31408 * 120.00071 * 359.97438 * 22 20 19 24 24 Si 1.86800 * 119.99563 * 179.97438 * 22 20 19 25 25 H 1.48500 * 109.47419 * 59.99974 * 24 22 20 26 26 H 1.48501 * 109.46776 * 179.97438 * 24 22 20 27 27 H 1.48502 * 109.47467 * 299.99606 * 24 22 20 28 28 C 1.53002 * 109.47070 * 59.99952 * 13 12 11 29 29 C 1.52999 * 109.47069 * 300.00224 * 28 13 12 30 30 H 1.09003 * 109.46923 * 305.87940 * 1 2 3 31 31 H 1.08998 * 109.47192 * 65.88008 * 1 2 3 32 32 H 1.09002 * 109.47055 * 185.88091 * 1 2 3 33 33 H 1.08996 * 109.46996 * 239.99955 * 2 1 3 34 34 H 1.08997 * 109.46772 * 120.00291 * 2 1 3 35 35 H 1.08999 * 109.46536 * 181.22383 * 3 2 1 36 36 H 1.08992 * 109.47561 * 54.74003 * 4 3 2 37 37 H 1.09000 * 109.47137 * 174.74346 * 4 3 2 38 38 H 1.09000 * 109.47288 * 300.63609 * 5 4 3 39 39 H 1.08998 * 109.46304 * 60.63439 * 5 4 3 40 40 H 1.09001 * 109.47007 * 180.62827 * 5 4 3 41 41 H 0.96998 * 120.00730 * 359.97438 * 8 6 3 42 42 H 1.09004 * 109.46894 * 299.99365 * 11 9 8 43 43 H 1.08994 * 109.47439 * 59.99429 * 11 9 8 44 44 H 1.09000 * 109.47215 * 59.99889 * 12 11 9 45 45 H 1.09007 * 109.47281 * 179.97438 * 12 11 9 46 46 H 1.00899 * 110.99700 * 31.04630 * 15 13 12 47 47 H 1.08994 * 109.47479 * 299.99775 * 16 15 13 48 48 H 1.08995 * 109.47155 * 60.00601 * 16 15 13 49 49 H 0.97000 * 120.00415 * 0.02562 * 19 17 16 50 50 H 0.96999 * 119.99874 * 180.02562 * 23 22 20 51 51 H 1.09000 * 109.46889 * 60.00163 * 28 13 12 52 52 H 1.09007 * 109.47313 * 180.02562 * 28 13 12 53 53 H 1.09000 * 109.47215 * 299.99739 * 29 28 13 54 54 H 1.08997 * 109.47115 * 180.02562 * 29 28 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 1.5050 2.1726 -1.2335 5 6 2.0949 1.5407 -2.4960 6 6 1.5625 2.1441 1.2454 7 8 0.8632 3.1309 1.1552 8 7 1.9127 1.6749 2.4593 9 6 1.4535 2.3604 3.6699 10 1 0.4522 2.7580 3.5046 11 6 1.4233 1.3706 4.8361 12 6 0.9443 2.0867 6.1005 13 6 1.9011 3.2342 6.4303 14 1 2.9024 2.8363 6.5952 15 7 1.4410 3.9221 7.6439 16 6 2.5571 4.5924 8.3243 17 6 2.0475 5.2860 9.5614 18 8 0.8705 5.2274 9.8483 19 7 2.8999 5.9707 10.3495 20 6 2.4363 6.6013 11.4752 21 1 1.3882 6.5497 11.7302 22 6 3.3151 7.3076 12.2875 23 7 4.5904 7.3708 11.9770 24 14 2.6833 8.1674 13.8209 25 1 2.0756 7.1669 14.7346 26 1 3.8117 8.8444 14.5090 27 1 1.6607 9.1739 13.4383 28 6 1.9314 4.2240 5.2640 29 6 2.4104 3.5079 3.9996 30 1 -0.3633 0.6023 0.8327 31 1 -0.3633 0.4199 -0.9379 32 1 -0.3633 -1.0223 0.1053 33 1 1.8933 -0.5138 -0.8899 34 1 1.8933 -0.5139 0.8899 35 1 3.1298 1.4426 -0.0219 36 1 0.4184 2.0920 -1.2606 37 1 1.7903 3.2235 -1.1859 38 1 3.1822 1.6113 -2.4636 39 1 1.8003 0.4926 -2.5493 40 1 1.7225 2.0680 -3.3743 41 1 2.4717 0.8855 2.5316 42 1 0.7418 0.5529 4.6011 43 1 2.4246 0.9730 5.0014 44 1 -0.0570 2.4846 5.9356 45 1 0.9223 1.3814 6.9314 46 1 0.9702 3.2821 8.2659 47 1 3.3080 3.8538 8.6048 48 1 3.0028 5.3272 7.6539 49 1 3.8412 6.0174 10.1204 50 1 5.2038 7.8635 12.5442 51 1 0.9302 4.6219 5.0990 52 1 2.6135 5.0413 5.4987 53 1 3.4117 3.1101 4.1645 54 1 2.4324 4.2132 3.1689 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001482010975.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:51:20 Heat of formation + Delta-G solvation = -134.182186 kcal Electronic energy + Delta-G solvation = -29586.356584 eV Core-core repulsion = 25555.294411 eV Total energy + Delta-G solvation = -4031.062173 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 339.231 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -41.36149 -40.30144 -39.46625 -37.09835 -36.44663 -35.86064 -34.05467 -33.24877 -32.05114 -31.80662 -30.11746 -28.39229 -27.34357 -25.62503 -24.36343 -23.87145 -22.98651 -21.89456 -21.17198 -20.95458 -20.04106 -19.85560 -18.04540 -17.77932 -17.31514 -16.89033 -16.83026 -16.42959 -16.15549 -16.07477 -15.58004 -15.35718 -15.24867 -15.16616 -14.84298 -14.32585 -14.23075 -14.05630 -13.86487 -13.74881 -13.51596 -13.38039 -13.13933 -13.03730 -12.90278 -12.88644 -12.63238 -12.44680 -12.34196 -12.30380 -12.26911 -12.11942 -12.06226 -11.97355 -11.51499 -11.49401 -11.41191 -11.37201 -11.21800 -10.63294 -10.34291 -10.02453 -9.99812 -9.30407 -8.47105 -5.96149 1.39535 1.41357 1.52439 1.71248 2.04494 2.21495 2.29195 2.91993 3.19983 3.48550 3.66645 3.72580 3.75847 3.84047 3.93962 4.16773 4.21267 4.23126 4.31152 4.32788 4.37993 4.41587 4.46916 4.48128 4.50215 4.53860 4.58823 4.61177 4.74809 4.78557 4.86235 4.86868 4.93982 5.04533 5.06438 5.08992 5.19242 5.22553 5.23443 5.26206 5.30223 5.31365 5.35761 5.39650 5.41993 5.56594 5.60617 5.92188 6.15387 6.46294 6.59591 6.63859 7.11750 7.35161 7.55317 8.10818 8.70018 Molecular weight = 339.23amu Principal moments of inertia in cm(-1) A = 0.033104 B = 0.001605 C = 0.001572 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 845.626056 B =17442.995377 C =17803.526817 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C -0.110 4.110 3 C -0.104 4.104 4 C -0.109 4.109 5 C -0.147 4.147 6 C 0.513 3.487 7 O -0.588 6.588 8 N -0.713 5.713 9 C 0.148 3.852 10 H 0.059 0.941 11 C -0.108 4.108 12 C -0.114 4.114 13 C 0.090 3.910 14 H 0.059 0.941 15 N -0.683 5.683 16 C 0.067 3.933 17 C 0.437 3.563 18 O -0.624 6.624 19 N -0.573 5.573 20 C -0.337 4.337 21 H 0.078 0.922 22 C -0.012 4.012 23 N -0.919 5.919 24 Si 0.994 3.006 25 H -0.271 1.271 26 H -0.269 1.269 27 H -0.274 1.274 28 C -0.103 4.103 29 C -0.116 4.116 30 H 0.030 0.970 31 H 0.054 0.946 32 H 0.068 0.932 33 H 0.096 0.904 34 H 0.084 0.916 35 H 0.118 0.882 36 H 0.056 0.944 37 H 0.046 0.954 38 H 0.063 0.937 39 H 0.070 0.930 40 H 0.054 0.946 41 H 0.415 0.585 42 H 0.085 0.915 43 H 0.091 0.909 44 H 0.060 0.940 45 H 0.079 0.921 46 H 0.346 0.654 47 H 0.069 0.931 48 H 0.097 0.903 49 H 0.396 0.604 50 H 0.278 0.722 51 H 0.049 0.951 52 H 0.055 0.945 53 H 0.081 0.919 54 H 0.047 0.953 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.781 -20.390 -26.702 33.644 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C -0.147 4.147 3 C -0.125 4.125 4 C -0.147 4.147 5 C -0.205 4.205 6 C 0.301 3.699 7 O -0.468 6.468 8 N -0.364 5.364 9 C 0.043 3.957 10 H 0.077 0.923 11 C -0.146 4.146 12 C -0.152 4.152 13 C -0.019 4.019 14 H 0.077 0.923 15 N -0.316 5.316 16 C -0.065 4.065 17 C 0.224 3.776 18 O -0.510 6.510 19 N -0.210 5.210 20 C -0.467 4.467 21 H 0.096 0.904 22 C -0.212 4.212 23 N -0.560 5.560 24 Si 0.817 3.183 25 H -0.196 1.196 26 H -0.194 1.194 27 H -0.199 1.199 28 C -0.142 4.142 29 C -0.155 4.155 30 H 0.049 0.951 31 H 0.073 0.927 32 H 0.087 0.913 33 H 0.114 0.886 34 H 0.102 0.898 35 H 0.136 0.864 36 H 0.075 0.925 37 H 0.065 0.935 38 H 0.082 0.918 39 H 0.089 0.911 40 H 0.073 0.927 41 H 0.253 0.747 42 H 0.103 0.897 43 H 0.109 0.891 44 H 0.079 0.921 45 H 0.098 0.902 46 H 0.166 0.834 47 H 0.086 0.914 48 H 0.115 0.885 49 H 0.230 0.770 50 H 0.087 0.913 51 H 0.068 0.932 52 H 0.074 0.926 53 H 0.099 0.901 54 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges 0.476 -19.083 -26.803 32.905 hybrid contribution 0.662 0.181 1.287 1.458 sum 1.138 -18.902 -25.516 31.775 Atomic orbital electron populations 1.21866 0.96594 1.01882 1.01175 1.21566 0.95528 0.92983 1.04629 1.21494 1.03008 0.96798 0.91181 1.21358 1.00666 0.98813 0.93856 1.21799 1.01267 1.01395 0.96001 1.21269 0.78920 0.83665 0.86016 1.90703 1.39801 1.28613 1.87714 1.45979 1.53695 1.32015 1.04738 1.20865 0.97466 0.92909 0.84456 0.92295 1.21666 1.03710 0.97232 0.92015 1.21613 0.98969 0.96318 0.98348 1.21631 0.97958 0.93159 0.89115 0.92290 1.60055 1.26693 1.36059 1.08760 1.21554 0.93275 0.98763 0.92930 1.20911 0.86429 0.83505 0.86737 1.90487 1.18617 1.66447 1.75487 1.41929 1.10514 1.46059 1.22489 1.19650 0.95503 1.29705 1.01816 0.90360 1.26042 0.95171 0.97831 1.02131 1.69664 1.03211 1.42674 1.40471 0.84982 0.77809 0.78226 0.77267 1.19583 1.19372 1.19886 1.21447 1.01099 0.97913 0.93738 1.21793 0.99904 0.97319 0.96506 0.95097 0.92661 0.91304 0.88604 0.89784 0.86378 0.92521 0.93547 0.91776 0.91128 0.92686 0.74747 0.89658 0.89092 0.92144 0.90231 0.83421 0.91351 0.88487 0.76979 0.91265 0.93231 0.92624 0.90070 0.93441 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.70 9.22 71.98 0.66 -1.04 16 2 C -0.11 -0.71 5.36 30.60 0.16 -0.55 16 3 C -0.10 -1.13 2.50 -11.54 -0.03 -1.16 16 4 C -0.11 -1.51 4.52 30.60 0.14 -1.38 16 5 C -0.15 -1.23 9.66 71.99 0.70 -0.54 16 6 C 0.51 9.35 5.82 87.66 0.51 9.86 16 7 O -0.59 -16.97 15.57 -3.03 -0.05 -17.02 16 8 N -0.71 -9.45 4.96 -442.54 -2.20 -11.65 16 9 C 0.15 2.58 2.46 44.99 0.11 2.69 16 10 H 0.06 1.43 7.57 -2.39 -0.02 1.41 16 11 C -0.11 -1.38 5.39 30.59 0.16 -1.21 16 12 C -0.11 -2.10 5.19 30.59 0.16 -1.94 16 13 C 0.09 2.09 2.49 44.91 0.11 2.20 16 14 H 0.06 1.20 7.80 -2.39 -0.02 1.18 16 15 N -0.68 -21.91 5.93 -495.58 -2.94 -24.85 16 16 C 0.07 2.36 5.97 85.56 0.51 2.87 16 17 C 0.44 21.27 7.82 87.66 0.69 21.95 16 18 O -0.62 -35.41 15.78 -3.07 -0.05 -35.46 16 19 N -0.57 -29.95 5.29 -306.98 -1.62 -31.57 16 20 C -0.34 -19.48 9.68 84.04 0.81 -18.67 16 21 H 0.08 4.81 7.16 -2.91 -0.02 4.79 16 22 C -0.01 -0.64 5.50 84.93 0.47 -0.18 16 23 N -0.92 -50.00 13.05 21.66 0.28 -49.71 16 24 Si 0.99 43.39 29.55 68.60 2.03 45.41 16 25 H -0.27 -11.62 7.11 99.48 0.71 -10.91 16 26 H -0.27 -11.02 7.11 99.48 0.71 -10.31 16 27 H -0.27 -11.89 7.11 99.48 0.71 -11.19 16 28 C -0.10 -2.53 5.42 30.59 0.17 -2.36 16 29 C -0.12 -2.31 5.49 30.60 0.17 -2.14 16 30 H 0.03 0.49 7.06 -2.39 -0.02 0.47 16 31 H 0.05 0.65 6.62 -2.39 -0.02 0.63 16 32 H 0.07 0.56 8.14 -2.39 -0.02 0.55 16 33 H 0.10 0.32 6.65 -2.39 -0.02 0.30 16 34 H 0.08 0.27 7.53 -2.39 -0.02 0.25 16 35 H 0.12 0.79 8.14 -2.39 -0.02 0.77 16 36 H 0.06 0.95 6.26 -2.39 -0.01 0.94 16 37 H 0.05 0.85 7.95 -2.39 -0.02 0.83 16 38 H 0.06 0.43 8.14 -2.39 -0.02 0.41 16 39 H 0.07 0.41 6.63 -2.39 -0.02 0.39 16 40 H 0.05 0.49 8.14 -2.39 -0.02 0.47 16 41 H 0.42 2.55 8.00 -92.71 -0.74 1.80 16 42 H 0.08 0.90 8.14 -2.38 -0.02 0.88 16 43 H 0.09 0.81 8.14 -2.39 -0.02 0.79 16 44 H 0.06 1.32 8.14 -2.39 -0.02 1.30 16 45 H 0.08 1.31 8.12 -2.38 -0.02 1.30 16 46 H 0.35 11.43 8.05 -89.69 -0.72 10.71 16 47 H 0.07 2.06 8.06 -2.39 -0.02 2.04 16 48 H 0.10 3.19 7.44 -2.39 -0.02 3.17 16 49 H 0.40 19.62 7.90 -92.71 -0.73 18.89 16 50 H 0.28 14.15 8.31 -92.71 -0.77 13.38 16 51 H 0.05 1.43 8.14 -2.39 -0.02 1.41 16 52 H 0.06 1.46 7.45 -2.38 -0.02 1.44 16 53 H 0.08 1.31 8.14 -2.39 -0.02 1.29 16 54 H 0.05 1.14 8.14 -2.39 -0.02 1.12 16 Total: -1.00 -75.60 419.93 -0.33 -75.93 By element: Atomic # 1 Polarization: 41.78 SS G_CDS: -1.29 Total: 40.49 kcal Atomic # 6 Polarization: 2.92 SS G_CDS: 5.50 Total: 8.42 kcal Atomic # 7 Polarization: -111.30 SS G_CDS: -6.48 Total: -117.78 kcal Atomic # 8 Polarization: -52.38 SS G_CDS: -0.10 Total: -52.47 kcal Atomic # 14 Polarization: 43.39 SS G_CDS: 2.03 Total: 45.41 kcal Total: -75.60 -0.33 -75.93 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001482010975.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -58.248 kcal (2) G-P(sol) polarization free energy of solvation -75.602 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -133.850 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.332 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.934 kcal (6) G-S(sol) free energy of system = (1) + (5) -134.182 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds