Wall clock time and date at job start Sat Apr 11 2020 05:51:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52998 * 109.47022 * 2 1 4 4 C 1.50704 * 109.46827 * 180.02562 * 3 2 1 5 5 O 1.21275 * 120.00166 * 359.97438 * 4 3 2 6 6 N 1.34780 * 119.99769 * 179.97438 * 4 3 2 7 7 C 1.46928 * 120.63038 * 0.02562 * 6 4 3 8 8 C 1.53187 * 108.77625 * 126.37031 * 7 6 4 9 9 C 1.53046 * 109.31363 * 54.63376 * 8 7 6 10 10 C 1.53046 * 109.53579 * 298.63645 * 9 8 7 11 11 H 1.08995 * 109.49472 * 301.37722 * 10 9 8 12 12 C 1.50700 * 109.49623 * 181.31259 * 10 9 8 13 13 O 1.21277 * 120.00485 * 240.00383 * 12 10 9 14 14 N 1.34782 * 119.99508 * 59.99926 * 12 10 9 15 15 C 1.46501 * 119.99445 * 179.97438 * 14 12 10 16 16 C 1.53005 * 109.46825 * 180.02562 * 15 14 12 17 17 H 1.08999 * 109.47195 * 54.99954 * 16 15 14 18 18 C 1.53003 * 109.47038 * 294.99957 * 16 15 14 19 19 C 1.53006 * 109.46993 * 175.00182 * 16 15 14 20 20 N 1.46497 * 109.46744 * 184.99791 * 19 16 15 21 21 C 1.36943 * 119.99739 * 179.97438 * 20 19 16 22 22 H 1.07998 * 119.99813 * 0.02562 * 21 20 19 23 23 C 1.38806 * 119.99992 * 180.02562 * 21 20 19 24 24 N 1.31618 * 120.00323 * 359.97438 * 23 21 20 25 25 Si 1.86805 * 119.99942 * 180.02562 * 23 21 20 26 26 H 1.48496 * 109.47158 * 59.99850 * 25 23 21 27 27 H 1.48502 * 109.46946 * 179.97438 * 25 23 21 28 28 H 1.48500 * 109.46846 * 299.99797 * 25 23 21 29 29 C 1.46921 * 120.63025 * 179.97438 * 6 4 3 30 30 H 1.09000 * 109.47059 * 180.02562 * 1 2 3 31 31 H 1.09003 * 109.46928 * 300.00153 * 1 2 3 32 32 H 1.08993 * 109.47279 * 60.00653 * 1 2 3 33 33 H 1.09000 * 109.47255 * 239.99160 * 2 1 3 34 34 H 1.08998 * 109.46911 * 119.99950 * 2 1 3 35 35 H 1.08994 * 109.47496 * 59.99846 * 3 2 1 36 36 H 1.09000 * 109.46758 * 299.99155 * 3 2 1 37 37 H 1.09000 * 109.58351 * 246.16146 * 7 6 4 38 38 H 1.08999 * 109.58293 * 6.58356 * 7 6 4 39 39 H 1.09001 * 109.49833 * 294.68424 * 8 7 6 40 40 H 1.08996 * 109.49835 * 174.58430 * 8 7 6 41 41 H 1.08993 * 109.46296 * 178.61734 * 9 8 7 42 42 H 1.09000 * 109.45696 * 58.65290 * 9 8 7 43 43 H 0.96989 * 120.00377 * 0.02562 * 14 12 10 44 44 H 1.08992 * 109.47784 * 300.00067 * 15 14 12 45 45 H 1.08998 * 109.47216 * 60.00571 * 15 14 12 46 46 H 1.08999 * 109.47125 * 300.00040 * 18 16 15 47 47 H 1.08994 * 109.46980 * 60.00037 * 18 16 15 48 48 H 1.08999 * 109.47174 * 180.02562 * 18 16 15 49 49 H 1.09000 * 109.47035 * 305.00271 * 19 16 15 50 50 H 1.09002 * 109.47184 * 65.00061 * 19 16 15 51 51 H 0.96999 * 120.00532 * 0.02562 * 20 19 16 52 52 H 0.96998 * 120.00572 * 180.02562 * 24 23 21 53 53 H 1.08996 * 109.58905 * 113.84216 * 29 6 4 54 54 H 1.09001 * 109.70481 * 353.48569 * 29 6 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5470 1.4424 -0.0006 5 8 4.1534 0.3922 -0.0006 6 7 4.2209 2.6097 -0.0013 7 6 3.5003 3.8901 -0.0008 8 6 4.0089 4.7417 1.1666 9 6 5.5303 4.8767 1.0694 10 6 6.1742 3.4916 1.1654 11 1 5.8911 3.0234 2.1081 12 6 7.6736 3.6284 1.1021 13 8 8.2952 3.0852 0.2136 14 7 8.3239 4.3546 2.0329 15 6 9.7816 4.4872 1.9716 16 6 10.2641 5.3550 3.1358 17 1 9.9050 4.9349 4.0753 18 6 9.7211 6.7760 2.9719 19 6 11.7937 5.3913 3.1449 20 7 12.2576 6.1222 4.3268 21 6 13.5992 6.2841 4.5487 22 1 14.3152 5.8733 3.8523 23 6 14.0388 6.9762 5.6688 24 7 13.1663 7.4772 6.5173 25 14 15.8689 7.1976 5.9712 26 1 16.4728 7.9361 4.8332 27 1 16.0739 7.9670 7.2247 28 1 16.5146 5.8662 6.0958 29 6 5.6900 2.6258 -0.0013 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3633 0.5139 0.8900 32 1 -0.3633 0.5137 -0.8900 33 1 1.8934 -0.5140 -0.8899 34 1 1.8933 -0.5138 0.8900 35 1 1.6767 1.9564 0.8899 36 1 1.6767 1.9562 -0.8901 37 1 3.6821 4.4120 -0.9403 38 1 2.4322 3.7082 0.1178 39 1 3.7458 4.2614 2.1090 40 1 3.5524 5.7304 1.1216 41 1 5.8922 5.5026 1.8851 42 1 5.7941 5.3344 0.1160 43 1 7.8269 4.7888 2.7436 44 1 10.2395 3.5005 2.0403 45 1 10.0646 4.9542 1.0283 46 1 10.0803 7.1961 2.0324 47 1 8.6315 6.7501 2.9653 48 1 10.0652 7.3943 3.8010 49 1 12.1812 4.3729 3.1722 50 1 12.1507 5.8920 2.2449 51 1 11.6146 6.4909 4.9525 52 1 13.4735 7.9612 7.2998 53 1 6.0508 3.0444 -0.9408 54 1 6.0688 1.6105 0.1156 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001482171833.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:51:30 Heat of formation + Delta-G solvation = -114.681950 kcal Electronic energy + Delta-G solvation = -29495.172266 eV Core-core repulsion = 25464.955686 eV Total energy + Delta-G solvation = -4030.216579 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 339.231 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -41.66867 -40.65999 -38.54262 -37.99138 -36.00146 -35.36804 -34.45585 -33.72931 -32.34016 -31.79582 -29.15324 -27.80376 -27.17014 -26.20106 -25.14394 -23.96757 -22.91641 -22.16890 -21.55630 -20.83813 -19.91297 -19.21603 -18.41153 -17.75706 -17.36127 -16.92203 -16.74761 -16.58320 -16.45748 -15.86998 -15.54450 -15.44585 -15.29452 -15.08712 -14.97051 -14.55633 -14.48952 -14.05812 -14.00562 -13.86740 -13.66918 -13.57011 -13.52570 -12.96334 -12.87542 -12.77932 -12.65432 -12.55559 -12.22152 -12.21416 -12.17958 -12.00632 -11.96921 -11.82817 -11.70815 -11.67059 -11.63270 -11.61977 -10.94734 -10.93392 -10.74164 -10.13079 -9.70913 -8.99860 -7.95869 -5.24142 1.47479 1.50019 1.56043 1.56150 1.59020 1.81484 2.28053 2.56702 3.37707 3.44702 3.58838 3.70869 3.76381 3.81648 3.95867 3.97717 4.04899 4.08690 4.12179 4.15130 4.21795 4.34959 4.46523 4.53928 4.57938 4.65290 4.69361 4.71415 4.72698 4.77533 4.79439 4.84133 4.88194 4.93222 4.93691 5.04706 5.10585 5.11250 5.12388 5.25993 5.28624 5.31711 5.37244 5.40594 5.44397 5.48415 5.49574 5.51115 6.26669 6.39073 6.50189 7.14444 7.19667 7.33805 8.08629 8.33461 9.27172 Molecular weight = 339.23amu Principal moments of inertia in cm(-1) A = 0.029803 B = 0.001598 C = 0.001577 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 939.268956 B =17513.557666 C =17752.170316 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.112 4.112 3 C -0.129 4.129 4 C 0.502 3.498 5 O -0.595 6.595 6 N -0.610 5.610 7 C 0.095 3.905 8 C -0.128 4.128 9 C -0.111 4.111 10 C -0.109 4.109 11 H 0.110 0.890 12 C 0.517 3.483 13 O -0.586 6.586 14 N -0.709 5.709 15 C 0.137 3.863 16 C -0.094 4.094 17 H 0.078 0.922 18 C -0.134 4.134 19 C 0.156 3.844 20 N -0.740 5.740 21 C -0.251 4.251 22 H 0.072 0.928 23 C -0.071 4.071 24 N -0.966 5.966 25 Si 0.972 3.028 26 H -0.279 1.279 27 H -0.293 1.293 28 H -0.280 1.280 29 C 0.135 3.865 30 H 0.054 0.946 31 H 0.067 0.933 32 H 0.067 0.933 33 H 0.048 0.952 34 H 0.049 0.951 35 H 0.122 0.878 36 H 0.120 0.880 37 H 0.081 0.919 38 H 0.118 0.882 39 H 0.075 0.925 40 H 0.109 0.891 41 H 0.089 0.911 42 H 0.070 0.930 43 H 0.415 0.585 44 H 0.055 0.945 45 H 0.065 0.935 46 H 0.051 0.949 47 H 0.079 0.921 48 H 0.042 0.958 49 H 0.016 0.984 50 H 0.021 0.979 51 H 0.377 0.623 52 H 0.252 0.748 53 H 0.067 0.933 54 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -32.365 -5.125 -13.441 35.418 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.151 4.151 3 C -0.168 4.168 4 C 0.293 3.707 5 O -0.475 6.475 6 N -0.343 5.343 7 C -0.026 4.026 8 C -0.166 4.166 9 C -0.149 4.149 10 C -0.131 4.131 11 H 0.128 0.872 12 C 0.304 3.696 13 O -0.466 6.466 14 N -0.361 5.361 15 C 0.013 3.987 16 C -0.113 4.113 17 H 0.096 0.904 18 C -0.191 4.191 19 C 0.029 3.971 20 N -0.384 5.384 21 C -0.383 4.383 22 H 0.090 0.910 23 C -0.263 4.263 24 N -0.617 5.617 25 Si 0.801 3.199 26 H -0.205 1.205 27 H -0.219 1.219 28 H -0.206 1.206 29 C 0.011 3.989 30 H 0.073 0.927 31 H 0.086 0.914 32 H 0.086 0.914 33 H 0.067 0.933 34 H 0.067 0.933 35 H 0.140 0.860 36 H 0.138 0.862 37 H 0.099 0.901 38 H 0.136 0.864 39 H 0.094 0.906 40 H 0.128 0.872 41 H 0.108 0.892 42 H 0.089 0.911 43 H 0.252 0.748 44 H 0.074 0.926 45 H 0.083 0.917 46 H 0.070 0.930 47 H 0.098 0.902 48 H 0.061 0.939 49 H 0.034 0.966 50 H 0.039 0.961 51 H 0.210 0.790 52 H 0.061 0.939 53 H 0.085 0.915 54 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -31.433 -6.056 -14.114 34.985 hybrid contribution 1.460 0.174 0.864 1.705 sum -29.974 -5.883 -13.250 33.295 Atomic orbital electron populations 1.21748 0.93399 1.02300 1.02936 1.21278 0.96915 0.95164 1.01701 1.21802 0.88254 1.00017 1.06738 1.21653 0.92114 0.82481 0.74438 1.90698 1.71770 1.33049 1.52029 1.48283 1.05864 1.07369 1.72788 1.22187 0.98067 0.82267 1.00035 1.21936 0.93887 1.01968 0.98788 1.21603 0.96709 0.92575 1.03982 1.21593 0.89717 1.00334 1.01448 0.87246 1.20938 0.90587 0.77309 0.80796 1.90712 1.70212 1.48631 1.37037 1.45883 1.07692 1.52277 1.30294 1.21129 0.80117 0.99188 0.98287 1.21330 0.94878 0.96904 0.98166 0.90395 1.21717 1.01130 0.94715 1.01567 1.20726 0.92650 0.94305 0.89436 1.42475 1.03938 1.65816 1.26123 1.19593 0.85079 1.28116 1.05478 0.91005 1.25512 1.01805 1.01371 0.97646 1.69786 1.34145 1.42858 1.14870 0.85241 0.80208 0.77626 0.76852 1.20470 1.21893 1.20614 1.21041 0.80294 1.00016 0.97579 0.92733 0.91396 0.91445 0.93342 0.93261 0.85964 0.86226 0.90069 0.86376 0.90615 0.87237 0.89240 0.91148 0.74769 0.92638 0.91694 0.92958 0.90219 0.93885 0.96589 0.96100 0.79023 0.93930 0.91499 0.92050 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.99 9.91 71.98 0.71 -0.28 16 2 C -0.11 -1.38 5.22 30.59 0.16 -1.22 16 3 C -0.13 -1.10 4.05 29.85 0.12 -0.98 16 4 C 0.50 9.21 7.70 87.66 0.67 9.88 16 5 O -0.59 -17.49 15.40 -3.01 -0.05 -17.54 16 6 N -0.61 -8.92 2.97 -819.02 -2.43 -11.35 16 7 C 0.10 0.49 6.34 86.36 0.55 1.03 16 8 C -0.13 -0.49 6.08 30.67 0.19 -0.30 16 9 C -0.11 -0.98 5.08 30.63 0.16 -0.83 16 10 C -0.11 -1.76 2.68 -11.48 -0.03 -1.79 16 11 H 0.11 1.61 8.14 -2.39 -0.02 1.59 16 12 C 0.52 12.17 7.16 87.66 0.63 12.80 16 13 O -0.59 -19.44 15.92 -3.02 -0.05 -19.49 16 14 N -0.71 -14.64 5.17 -463.06 -2.39 -17.03 16 15 C 0.14 3.62 5.06 86.38 0.44 4.05 16 16 C -0.09 -2.74 2.46 -10.79 -0.03 -2.76 16 17 H 0.08 2.29 8.14 -2.39 -0.02 2.27 16 18 C -0.13 -3.58 8.94 71.98 0.64 -2.94 16 19 C 0.16 6.17 5.65 86.38 0.49 6.66 16 20 N -0.74 -37.17 5.33 -343.45 -1.83 -39.00 16 21 C -0.25 -14.10 9.99 84.03 0.84 -13.26 16 22 H 0.07 3.92 7.83 -2.91 -0.02 3.89 16 23 C -0.07 -4.05 5.50 84.86 0.47 -3.59 16 24 N -0.97 -58.33 13.06 21.65 0.28 -58.04 16 25 Si 0.97 46.11 29.55 68.60 2.03 48.14 16 26 H -0.28 -12.77 7.11 99.48 0.71 -12.06 16 27 H -0.29 -13.88 7.11 99.48 0.71 -13.17 16 28 H -0.28 -12.90 7.11 99.48 0.71 -12.19 16 29 C 0.13 2.77 5.06 86.35 0.44 3.21 16 30 H 0.05 0.42 8.14 -2.39 -0.02 0.40 16 31 H 0.07 0.31 8.14 -2.39 -0.02 0.29 16 32 H 0.07 0.31 8.14 -2.39 -0.02 0.29 16 33 H 0.05 0.78 8.10 -2.39 -0.02 0.76 16 34 H 0.05 0.79 8.10 -2.39 -0.02 0.77 16 35 H 0.12 0.38 7.69 -2.39 -0.02 0.36 16 36 H 0.12 0.42 7.94 -2.39 -0.02 0.40 16 37 H 0.08 0.34 8.14 -2.39 -0.02 0.32 16 38 H 0.12 -0.07 5.93 -2.39 -0.01 -0.08 16 39 H 0.08 0.29 8.14 -2.39 -0.02 0.27 16 40 H 0.11 -0.04 8.14 -2.39 -0.02 -0.06 16 41 H 0.09 0.58 7.53 -2.39 -0.02 0.56 16 42 H 0.07 0.71 8.14 -2.39 -0.02 0.70 16 43 H 0.41 6.12 7.06 -92.72 -0.65 5.46 16 44 H 0.06 1.63 8.14 -2.39 -0.02 1.61 16 45 H 0.06 1.79 8.14 -2.39 -0.02 1.78 16 46 H 0.05 1.41 8.14 -2.39 -0.02 1.39 16 47 H 0.08 1.51 7.18 -2.39 -0.02 1.50 16 48 H 0.04 1.41 7.18 -2.39 -0.02 1.39 16 49 H 0.02 0.66 8.14 -2.39 -0.02 0.64 16 50 H 0.02 0.84 8.14 -2.39 -0.02 0.82 16 51 H 0.38 19.72 6.85 -92.71 -0.64 19.08 16 52 H 0.25 14.76 8.31 -92.71 -0.77 13.99 16 53 H 0.07 1.49 7.96 -2.39 -0.02 1.47 16 54 H 0.06 1.74 7.01 -2.39 -0.02 1.72 16 Total: -1.00 -80.06 424.26 1.58 -78.48 By element: Atomic # 1 Polarization: 26.57 SS G_CDS: -0.41 Total: 26.16 kcal Atomic # 6 Polarization: 3.24 SS G_CDS: 6.44 Total: 9.68 kcal Atomic # 7 Polarization: -119.05 SS G_CDS: -6.38 Total: -125.43 kcal Atomic # 8 Polarization: -36.93 SS G_CDS: -0.09 Total: -37.03 kcal Atomic # 14 Polarization: 46.11 SS G_CDS: 2.03 Total: 48.14 kcal Total: -80.06 1.58 -78.48 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001482171833.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -36.206 kcal (2) G-P(sol) polarization free energy of solvation -80.061 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -116.266 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.585 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.476 kcal (6) G-S(sol) free energy of system = (1) + (5) -114.682 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds