Wall clock time and date at job start Sat Apr 11 2020 05:49:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.52997 * 109.47010 * 2 1 4 4 C 1.52999 * 109.47246 * 239.99975 * 2 1 3 5 5 O 1.42899 * 109.46763 * 119.99842 * 2 1 3 6 6 C 1.42896 * 113.99970 * 60.00405 * 5 2 1 7 7 C 1.50709 * 109.47082 * 180.02562 * 6 5 2 8 8 O 1.21271 * 119.99567 * 359.97438 * 7 6 5 9 9 N 1.34777 * 119.99952 * 179.97438 * 7 6 5 10 10 C 1.47020 * 125.64853 * 359.68962 * 9 7 6 11 11 C 1.54313 * 107.27690 * 180.96793 * 10 9 7 12 12 C 1.55153 * 102.86323 * 22.52574 * 11 10 9 13 13 H 1.09003 * 111.00419 * 82.37403 * 12 11 10 14 14 N 1.46900 * 111.04066 * 206.21725 * 12 11 10 15 15 C 1.46900 * 110.99599 * 296.24875 * 14 12 11 16 16 C 1.53242 * 109.33747 * 172.74561 * 15 14 12 17 17 N 1.47075 * 108.52166 * 53.83125 * 16 15 14 18 18 C 1.36939 * 120.88340 * 128.83607 * 17 16 15 19 19 H 1.08004 * 119.99759 * 208.71785 * 18 17 16 20 20 C 1.38811 * 119.99954 * 28.72186 * 18 17 16 21 21 N 1.31621 * 119.99721 * 14.75272 * 20 18 17 22 22 Si 1.86795 * 119.99925 * 194.75299 * 20 18 17 23 23 H 1.48500 * 109.46972 * 90.00203 * 22 20 18 24 24 H 1.48510 * 109.47053 * 209.99814 * 22 20 18 25 25 H 1.48493 * 109.47223 * 329.99927 * 22 20 18 26 26 C 1.47081 * 118.23698 * 308.81539 * 17 16 15 27 27 C 1.46897 * 111.00033 * 171.94577 * 14 12 11 28 28 C 1.47421 * 125.64614 * 179.97438 * 9 7 6 29 29 H 1.08990 * 109.47113 * 300.00397 * 1 2 3 30 30 H 1.09002 * 109.46717 * 60.00000 * 1 2 3 31 31 H 1.08999 * 109.46793 * 179.97438 * 1 2 3 32 32 H 1.09003 * 109.46875 * 179.97438 * 3 2 1 33 33 H 1.09002 * 109.47381 * 299.99593 * 3 2 1 34 34 H 1.09000 * 109.47506 * 59.99760 * 3 2 1 35 35 H 1.09000 * 109.46991 * 300.00480 * 4 2 1 36 36 H 1.09000 * 109.47324 * 59.99572 * 4 2 1 37 37 H 1.08994 * 109.47328 * 180.02562 * 4 2 1 38 38 H 1.09000 * 109.47577 * 59.99371 * 6 5 2 39 39 H 1.09000 * 109.47086 * 299.99379 * 6 5 2 40 40 H 1.09003 * 109.88061 * 300.51334 * 10 9 7 41 41 H 1.09005 * 109.88731 * 61.67594 * 10 9 7 42 42 H 1.08998 * 110.92713 * 264.10895 * 11 10 9 43 43 H 1.09005 * 110.74457 * 140.85165 * 11 10 9 44 44 H 1.09002 * 109.49260 * 292.70677 * 15 14 12 45 45 H 1.08999 * 109.49344 * 52.78715 * 15 14 12 46 46 H 1.08993 * 109.62823 * 294.11624 * 16 15 14 47 47 H 1.09001 * 109.62372 * 173.54037 * 16 15 14 48 48 H 0.97009 * 119.99913 * 180.02562 * 21 20 18 49 49 H 1.09008 * 109.62537 * 291.47493 * 26 17 16 50 50 H 1.08998 * 109.78921 * 170.99267 * 26 17 16 51 51 H 1.09000 * 109.49558 * 307.21169 * 27 14 12 52 52 H 1.09000 * 109.49300 * 67.29352 * 27 14 12 53 53 H 1.08997 * 110.36563 * 274.67031 * 28 9 7 54 54 H 1.08996 * 110.37036 * 36.99737 * 28 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0401 -0.7212 -1.2492 5 8 2.0063 -0.6736 1.1668 6 6 1.5847 -2.0355 1.2645 7 6 2.1410 -2.6443 2.5259 8 8 2.8309 -1.9777 3.2678 9 7 1.8717 -3.9296 2.8294 10 6 1.0482 -4.8452 2.0263 11 6 1.0009 -6.1943 2.7740 12 6 1.3236 -5.7900 4.2368 13 1 0.4322 -5.4248 4.7469 14 7 1.9266 -6.9093 4.9725 15 6 0.9846 -8.0303 5.0902 16 6 1.7058 -9.2374 5.6994 17 7 2.3342 -8.8182 6.9613 18 6 2.1329 -9.5262 8.1160 19 1 2.1759 -9.0246 9.0715 20 6 1.8738 -10.8887 8.0584 21 7 2.1038 -11.5560 6.9474 22 14 1.1987 -11.7752 9.5576 23 1 -0.2856 -11.7437 9.5245 24 1 1.6641 -13.1855 9.5501 25 1 1.6808 -11.1014 10.7899 26 6 3.1850 -7.6184 6.9501 27 6 2.4057 -6.4751 6.2916 28 6 2.3492 -4.6483 4.0247 29 1 -0.3633 0.5138 0.8899 30 1 -0.3633 0.5139 -0.8900 31 1 -0.3633 -1.0277 -0.0005 32 1 3.1301 1.4425 0.0005 33 1 1.6768 1.9563 -0.8900 34 1 1.6767 1.9564 0.8899 35 1 1.6767 -1.7489 -1.2492 36 1 1.6767 -0.2075 -2.1392 37 1 3.1300 -0.7217 -1.2490 38 1 1.9491 -2.5916 0.4007 39 1 0.4958 -2.0777 1.2907 40 1 0.0410 -4.4421 1.9209 41 1 1.4989 -4.9839 1.0435 42 1 1.7551 -6.8800 2.3881 43 1 0.0076 -6.6383 2.7069 44 1 0.1532 -7.7408 5.7329 45 1 0.6066 -8.2930 4.1021 46 1 2.4710 -9.5931 5.0096 47 1 0.9868 -10.0330 5.8950 48 1 1.9224 -12.5081 6.9071 49 1 4.0926 -7.8186 6.3805 50 1 3.4471 -7.3423 7.9714 51 1 3.0583 -5.6099 6.1749 52 1 1.5545 -6.2073 6.9176 53 1 3.3433 -5.0591 3.8483 54 1 2.3604 -3.9832 4.8881 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001502099629.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:49:38 Heat of formation + Delta-G solvation = -64.524913 kcal Electronic energy + Delta-G solvation = -30518.827506 eV Core-core repulsion = 26490.785900 eV Total energy + Delta-G solvation = -4028.041607 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 339.231 amu Computer time = 1.20 seconds Orbital eigenvalues (eV) -41.38027 -40.20537 -39.41491 -38.05950 -35.83169 -34.40929 -33.44032 -31.83895 -31.76446 -30.17015 -29.08137 -28.28083 -28.10938 -27.14787 -25.05176 -24.46637 -23.48106 -21.64867 -21.02386 -20.81137 -20.33077 -18.83323 -18.42177 -17.73199 -17.28652 -17.02610 -16.80435 -16.48584 -15.79909 -15.71740 -15.50117 -15.27721 -15.22577 -14.92595 -14.85707 -14.63898 -14.54272 -14.23377 -13.93415 -13.67238 -13.60001 -13.30748 -13.12038 -12.97171 -12.85803 -12.75201 -12.70654 -12.64776 -12.55946 -12.52443 -12.22455 -12.17300 -12.02127 -11.88501 -11.81450 -11.58909 -11.44893 -11.35951 -10.87859 -10.59217 -10.58763 -9.75691 -9.32792 -8.65651 -7.87723 -5.34959 1.46839 1.47266 1.48294 1.56580 1.57371 2.50163 2.77853 2.99460 3.27943 3.33718 3.65182 3.69286 3.70018 3.90046 3.96224 4.05076 4.08114 4.12798 4.18731 4.23598 4.32091 4.33154 4.38276 4.55249 4.58690 4.63929 4.67436 4.68318 4.68683 4.77417 4.81018 4.82395 4.87821 4.89246 4.95289 4.95578 5.01311 5.02399 5.15986 5.17976 5.19649 5.26363 5.34153 5.37087 5.38159 5.61474 5.70814 6.11879 6.18710 6.23456 6.38534 6.44478 7.04975 7.14337 7.83434 8.38338 9.18757 Molecular weight = 339.23amu Principal moments of inertia in cm(-1) A = 0.036660 B = 0.001887 C = 0.001845 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 763.587873 B =14833.962973 C =15169.998081 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C 0.094 3.906 3 C -0.139 4.139 4 C -0.178 4.178 5 O -0.388 6.388 6 C 0.052 3.948 7 C 0.521 3.479 8 O -0.579 6.579 9 N -0.615 5.615 10 C 0.100 3.900 11 C -0.117 4.117 12 C 0.071 3.929 13 H 0.053 0.947 14 N -0.527 5.527 15 C 0.055 3.945 16 C 0.186 3.814 17 N -0.614 5.614 18 C -0.265 4.265 19 H 0.063 0.937 20 C -0.048 4.048 21 N -0.933 5.933 22 Si 0.969 3.031 23 H -0.284 1.284 24 H -0.293 1.293 25 H -0.271 1.271 26 C 0.145 3.855 27 C 0.054 3.946 28 C 0.121 3.879 29 H 0.054 0.946 30 H 0.087 0.913 31 H 0.070 0.930 32 H 0.053 0.947 33 H 0.096 0.904 34 H 0.053 0.947 35 H 0.070 0.930 36 H 0.087 0.913 37 H 0.054 0.946 38 H 0.107 0.893 39 H 0.107 0.893 40 H 0.097 0.903 41 H 0.098 0.902 42 H 0.085 0.915 43 H 0.101 0.899 44 H 0.019 0.981 45 H 0.093 0.907 46 H 0.001 0.999 47 H 0.057 0.943 48 H 0.251 0.749 49 H 0.016 0.984 50 H 0.057 0.943 51 H 0.084 0.916 52 H 0.023 0.977 53 H 0.070 0.930 54 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.319 20.759 -20.732 30.238 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.235 4.235 2 C 0.056 3.944 3 C -0.196 4.196 4 C -0.235 4.235 5 O -0.308 6.308 6 C -0.027 4.027 7 C 0.311 3.689 8 O -0.458 6.458 9 N -0.351 5.351 10 C -0.022 4.022 11 C -0.155 4.155 12 C -0.038 4.038 13 H 0.071 0.929 14 N -0.252 5.252 15 C -0.074 4.074 16 C 0.060 3.940 17 N -0.338 5.338 18 C -0.396 4.396 19 H 0.081 0.919 20 C -0.244 4.244 21 N -0.579 5.579 22 Si 0.797 3.203 23 H -0.210 1.210 24 H -0.220 1.220 25 H -0.196 1.196 26 C 0.020 3.980 27 C -0.076 4.076 28 C -0.002 4.002 29 H 0.073 0.927 30 H 0.106 0.894 31 H 0.089 0.911 32 H 0.072 0.928 33 H 0.114 0.886 34 H 0.072 0.928 35 H 0.089 0.911 36 H 0.106 0.894 37 H 0.073 0.927 38 H 0.124 0.876 39 H 0.124 0.876 40 H 0.116 0.884 41 H 0.116 0.884 42 H 0.104 0.896 43 H 0.120 0.880 44 H 0.037 0.963 45 H 0.111 0.889 46 H 0.019 0.981 47 H 0.075 0.925 48 H 0.060 0.940 49 H 0.034 0.966 50 H 0.075 0.925 51 H 0.102 0.898 52 H 0.041 0.959 53 H 0.088 0.912 54 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -6.429 20.968 -20.518 30.033 hybrid contribution -0.671 -0.746 1.562 1.856 sum -7.100 20.221 -18.956 28.612 Atomic orbital electron populations 1.22441 0.94159 1.03389 1.03496 1.21874 0.94424 0.93414 0.84676 1.21803 1.01529 0.93108 1.03175 1.22441 1.01786 1.01592 0.97680 1.88072 1.75022 1.22748 1.44975 1.22231 1.00836 0.84867 0.94729 1.20678 0.80228 0.80117 0.87899 1.90708 1.40519 1.61485 1.53128 1.48438 1.51613 1.10335 1.24680 1.22378 0.96143 0.88353 0.95323 1.22710 1.04213 0.96704 0.91907 1.22754 0.94827 0.90265 0.95999 0.92950 1.61931 1.38280 1.07027 1.17943 1.22584 0.92843 0.91770 1.00199 1.20637 0.94594 0.93381 0.85401 1.44378 1.53938 1.29019 1.06485 1.19495 1.43247 0.90058 0.86766 0.91894 1.25829 1.01825 0.96878 0.99856 1.70166 1.51863 1.07555 1.28350 0.85248 0.78122 0.77361 0.79571 1.21026 1.21997 1.19634 1.21082 0.92263 0.86790 0.97903 1.22458 0.98322 0.97706 0.89065 1.22054 0.97962 0.92456 0.87770 0.92659 0.89410 0.91114 0.92776 0.88563 0.92779 0.91120 0.89402 0.92659 0.87579 0.87583 0.88442 0.88408 0.89627 0.88026 0.96307 0.88904 0.98082 0.92503 0.93985 0.96620 0.92499 0.89772 0.95871 0.91223 0.92280 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.63 8.25 71.98 0.59 -1.04 16 2 C 0.09 1.26 1.14 -10.79 -0.01 1.25 16 3 C -0.14 -1.76 8.84 71.98 0.64 -1.12 16 4 C -0.18 -1.65 8.25 71.98 0.59 -1.05 16 5 O -0.39 -8.42 9.52 -129.94 -1.24 -9.65 16 6 C 0.05 0.87 4.81 71.24 0.34 1.21 16 7 C 0.52 13.29 7.93 87.66 0.69 13.99 16 8 O -0.58 -21.17 16.75 16.04 0.27 -20.90 16 9 N -0.62 -13.31 3.33 -811.78 -2.70 -16.01 16 10 C 0.10 1.28 6.48 86.73 0.56 1.85 16 11 C -0.12 -2.01 5.43 31.78 0.17 -1.83 16 12 C 0.07 1.74 2.71 46.31 0.13 1.87 16 13 H 0.05 1.32 8.14 -2.39 -0.02 1.30 16 14 N -0.53 -17.08 4.53 -861.86 -3.90 -20.98 16 15 C 0.05 1.97 5.49 86.38 0.47 2.45 16 16 C 0.19 8.90 5.39 86.35 0.47 9.36 16 17 N -0.61 -31.46 3.03 -698.13 -2.12 -33.57 16 18 C -0.27 -14.81 9.62 84.03 0.81 -14.00 16 19 H 0.06 3.45 7.87 -2.91 -0.02 3.43 16 20 C -0.05 -2.70 4.97 84.86 0.42 -2.28 16 21 N -0.93 -55.03 11.17 21.65 0.24 -54.79 16 22 Si 0.97 44.95 29.58 68.60 2.03 46.98 16 23 H -0.28 -12.86 7.11 99.48 0.71 -12.15 16 24 H -0.29 -13.65 7.11 99.48 0.71 -12.94 16 25 H -0.27 -12.13 7.11 99.48 0.71 -11.42 16 26 C 0.15 6.28 6.69 86.35 0.58 6.85 16 27 C 0.05 1.89 5.46 86.38 0.47 2.36 16 28 C 0.12 3.13 5.23 86.86 0.45 3.59 16 29 H 0.05 0.64 8.14 -2.39 -0.02 0.62 16 30 H 0.09 0.48 8.14 -2.39 -0.02 0.46 16 31 H 0.07 0.49 6.54 -2.39 -0.02 0.47 16 32 H 0.05 0.79 8.14 -2.39 -0.02 0.77 16 33 H 0.10 0.70 8.14 -2.39 -0.02 0.68 16 34 H 0.05 0.79 8.14 -2.39 -0.02 0.77 16 35 H 0.07 0.49 6.54 -2.39 -0.02 0.48 16 36 H 0.09 0.48 8.14 -2.39 -0.02 0.46 16 37 H 0.05 0.65 8.14 -2.39 -0.02 0.63 16 38 H 0.11 1.19 6.42 -2.39 -0.02 1.17 16 39 H 0.11 1.17 6.42 -2.39 -0.02 1.15 16 40 H 0.10 0.77 8.14 -2.39 -0.02 0.75 16 41 H 0.10 0.82 8.14 -2.38 -0.02 0.81 16 42 H 0.09 1.63 8.14 -2.39 -0.02 1.61 16 43 H 0.10 1.39 7.94 -2.38 -0.02 1.37 16 44 H 0.02 0.70 8.14 -2.39 -0.02 0.68 16 45 H 0.09 2.76 6.93 -2.39 -0.02 2.75 16 46 H 0.00 0.06 8.14 -2.39 -0.02 0.04 16 47 H 0.06 3.05 6.21 -2.39 -0.01 3.03 16 48 H 0.25 14.28 8.31 -92.70 -0.77 13.51 16 49 H 0.02 0.71 8.14 -2.38 -0.02 0.69 16 50 H 0.06 2.39 7.96 -2.39 -0.02 2.37 16 51 H 0.08 2.61 6.73 -2.39 -0.02 2.60 16 52 H 0.02 0.84 8.14 -2.39 -0.02 0.82 16 53 H 0.07 1.98 8.14 -2.39 -0.02 1.96 16 54 H 0.06 1.73 7.74 -2.39 -0.02 1.71 16 Total: -1.00 -75.73 411.82 0.82 -74.91 By element: Atomic # 1 Polarization: 9.72 SS G_CDS: 0.85 Total: 10.57 kcal Atomic # 6 Polarization: 16.06 SS G_CDS: 7.38 Total: 23.44 kcal Atomic # 7 Polarization: -116.87 SS G_CDS: -8.48 Total: -125.35 kcal Atomic # 8 Polarization: -29.58 SS G_CDS: -0.97 Total: -30.55 kcal Atomic # 14 Polarization: 44.95 SS G_CDS: 2.03 Total: 46.98 kcal Total: -75.73 0.82 -74.91 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001502099629.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.388 kcal (2) G-P(sol) polarization free energy of solvation -75.732 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.344 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.819 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.913 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.525 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.20 seconds