Wall clock time and date at job start Sat Apr 11 2020 05:49:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53007 * 109.46885 * 2 1 4 4 H 1.08997 * 109.47044 * 305.00523 * 3 2 1 5 5 C 1.53002 * 109.46893 * 65.00142 * 3 2 1 6 6 C 1.53002 * 109.46956 * 184.99940 * 3 2 1 7 7 C 1.50699 * 109.46832 * 175.00131 * 6 3 2 8 8 O 1.21279 * 120.00246 * 0.02562 * 7 6 3 9 9 N 1.34777 * 119.99983 * 180.02562 * 7 6 3 10 10 C 1.46932 * 120.63031 * 354.43235 * 9 7 6 11 11 C 1.53187 * 108.77556 * 126.41067 * 10 9 7 12 12 C 1.53046 * 109.33869 * 54.62261 * 11 10 9 13 13 C 1.53037 * 109.53494 * 298.67933 * 12 11 10 14 14 C 1.46925 * 120.63343 * 174.45467 * 9 7 6 15 15 H 1.08998 * 109.58729 * 113.79873 * 14 9 7 16 16 C 1.52996 * 109.58364 * 353.37422 * 14 9 7 17 17 N 1.46903 * 109.47112 * 181.85749 * 16 14 9 18 18 C 1.46902 * 111.00185 * 184.94256 * 17 16 14 19 19 C 1.50697 * 109.47095 * 179.97438 * 18 17 16 20 20 O 1.21292 * 120.00133 * 0.02562 * 19 18 17 21 21 N 1.34775 * 119.99915 * 179.97438 * 19 18 17 22 22 C 1.37097 * 119.99911 * 180.02562 * 21 19 18 23 23 H 1.07993 * 120.00064 * 0.02562 * 22 21 19 24 24 C 1.38948 * 119.99857 * 179.97438 * 22 21 19 25 25 N 1.31413 * 120.00297 * 0.02562 * 24 22 21 26 26 Si 1.86807 * 120.00011 * 179.97438 * 24 22 21 27 27 H 1.48501 * 109.46426 * 90.00231 * 26 24 22 28 28 H 1.48495 * 109.47227 * 210.00127 * 26 24 22 29 29 H 1.48500 * 109.47143 * 330.00472 * 26 24 22 30 30 H 1.09008 * 109.46899 * 299.99434 * 1 2 3 31 31 H 1.08993 * 109.47369 * 60.00061 * 1 2 3 32 32 H 1.08999 * 109.47176 * 180.02562 * 1 2 3 33 33 H 1.09000 * 109.47231 * 240.00567 * 2 1 3 34 34 H 1.08999 * 109.47454 * 119.99483 * 2 1 3 35 35 H 1.09001 * 109.47111 * 59.99860 * 5 3 2 36 36 H 1.08998 * 109.47173 * 179.97438 * 5 3 2 37 37 H 1.08997 * 109.47330 * 300.00123 * 5 3 2 38 38 H 1.09001 * 109.46888 * 55.00202 * 6 3 2 39 39 H 1.09002 * 109.47353 * 294.99973 * 6 3 2 40 40 H 1.09001 * 109.58542 * 6.62197 * 10 9 7 41 41 H 1.08998 * 109.70405 * 246.27541 * 10 9 7 42 42 H 1.09003 * 109.49793 * 174.58755 * 11 10 9 43 43 H 1.09001 * 109.49906 * 294.65159 * 11 10 9 44 44 H 1.09001 * 109.45817 * 58.66626 * 12 11 10 45 45 H 1.08997 * 109.45718 * 178.63276 * 12 11 10 46 46 H 1.08999 * 109.47689 * 301.36616 * 13 12 11 47 47 H 1.09001 * 109.52083 * 181.29702 * 13 12 11 48 48 H 1.09006 * 109.47058 * 301.85168 * 16 14 9 49 49 H 1.09000 * 109.47215 * 61.85530 * 16 14 9 50 50 H 1.00904 * 110.99656 * 308.89503 * 17 16 14 51 51 H 1.08993 * 109.47004 * 299.99902 * 18 17 16 52 52 H 1.09006 * 109.46967 * 59.99956 * 18 17 16 53 53 H 0.97003 * 120.00239 * 0.02562 * 21 19 18 54 54 H 0.96995 * 120.00280 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 1.6053 1.9816 -0.8417 5 6 1.6352 2.1266 1.3074 6 6 3.5648 1.4444 -0.1257 7 6 4.0569 2.8635 -0.2492 8 8 3.2659 3.7828 -0.2373 9 7 5.3759 3.1110 -0.3728 10 6 6.3553 2.0208 -0.2671 11 6 7.2490 2.0383 -1.5111 12 6 7.8702 3.4281 -1.6693 13 6 6.7612 4.4661 -1.8557 14 6 5.8620 4.4761 -0.6155 15 1 6.4330 4.8194 0.2472 16 6 4.6729 5.4094 -0.8516 17 7 5.1632 6.7643 -1.1378 18 6 4.0484 7.7139 -1.2545 19 6 4.5891 9.0898 -1.5470 20 8 5.7854 9.2623 -1.6487 21 7 3.7433 10.1284 -1.6966 22 6 4.2352 11.3800 -1.9632 23 1 5.3003 11.5337 -2.0537 24 6 3.3632 12.4507 -2.1179 25 7 2.0671 12.2637 -2.0082 26 14 4.0334 14.1563 -2.4805 27 1 4.1335 14.3466 -3.9499 28 1 3.1199 15.1787 -1.9100 29 1 5.3795 14.2993 -1.8700 30 1 -0.3633 0.5138 0.8901 31 1 -0.3634 0.5138 -0.8899 32 1 -0.3633 -1.0277 0.0005 33 1 1.8934 -0.5137 -0.8900 34 1 1.8934 -0.5137 0.8900 35 1 2.0698 1.5875 2.1492 36 1 1.9988 3.1541 1.3076 37 1 0.5489 2.1252 1.3970 38 1 3.8570 0.8801 -1.0113 39 1 4.0030 0.9837 0.7597 40 1 5.8337 1.0657 -0.2053 41 1 6.9668 2.1613 0.6242 42 1 8.0401 1.2966 -1.4013 43 1 6.6510 1.8047 -2.3920 44 1 8.4483 3.6710 -0.7777 45 1 8.5255 3.4358 -2.5402 46 1 6.1677 4.2102 -2.7334 47 1 7.2048 5.4525 -1.9913 48 1 4.0896 5.0477 -1.6984 49 1 4.0453 5.4308 0.0394 50 1 5.8230 7.0657 -0.4364 51 1 3.3892 7.4024 -2.0647 52 1 3.4895 7.7348 -0.3189 53 1 2.7866 9.9904 -1.6156 54 1 1.4584 13.0112 -2.1159 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001505404218.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:49:53 Heat of formation + Delta-G solvation = -103.422040 kcal Electronic energy + Delta-G solvation = -30454.489241 eV Core-core repulsion = 26424.760928 eV Total energy + Delta-G solvation = -4029.728313 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 339.231 amu Computer time = 1.19 seconds Orbital eigenvalues (eV) -41.68140 -40.16308 -38.81027 -37.18761 -36.72369 -35.84619 -33.89286 -33.32901 -32.69236 -31.32251 -29.01863 -28.63659 -26.95586 -25.74663 -25.06056 -24.55135 -22.71687 -21.81864 -21.17698 -20.78537 -19.99316 -19.68972 -18.25069 -17.54199 -17.19145 -16.75733 -16.64387 -16.46373 -16.00716 -15.86128 -15.40609 -15.34569 -15.15470 -15.08201 -14.88823 -14.76382 -14.35490 -14.13344 -14.07974 -13.75189 -13.50954 -13.37594 -13.30502 -13.00987 -12.92431 -12.78245 -12.70945 -12.59904 -12.43822 -12.16109 -12.12848 -12.02955 -11.91000 -11.69154 -11.54595 -11.52936 -11.50754 -11.38257 -11.35268 -10.42650 -10.27951 -10.04487 -9.54516 -9.15341 -8.48292 -5.97993 1.36971 1.40045 1.53869 1.69777 1.95801 2.00997 2.28331 2.94274 3.18094 3.48396 3.61830 3.79518 3.86400 3.92072 3.99445 4.03180 4.11641 4.26091 4.28192 4.29482 4.32177 4.44298 4.46875 4.52400 4.57284 4.62046 4.67813 4.71993 4.73701 4.80211 4.85387 4.93782 4.94809 5.01605 5.03961 5.12633 5.16021 5.20416 5.24470 5.26136 5.29515 5.34437 5.38619 5.49055 5.53813 5.60593 5.66553 5.84946 6.04880 6.37692 6.52474 6.56874 7.09212 7.29689 7.52105 8.06718 8.69454 Molecular weight = 339.23amu Principal moments of inertia in cm(-1) A = 0.012339 B = 0.002330 C = 0.001998 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2268.710302 B =12014.501526 C =14012.288270 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C -0.112 4.112 3 C -0.075 4.075 4 H 0.052 0.948 5 C -0.151 4.151 6 C -0.128 4.128 7 C 0.501 3.499 8 O -0.567 6.567 9 N -0.609 5.609 10 C 0.103 3.897 11 C -0.130 4.130 12 C -0.120 4.120 13 C -0.116 4.116 14 C 0.153 3.847 15 H 0.071 0.929 16 C 0.082 3.918 17 N -0.679 5.679 18 C 0.072 3.928 19 C 0.441 3.559 20 O -0.619 6.619 21 N -0.573 5.573 22 C -0.334 4.334 23 H 0.081 0.919 24 C -0.016 4.016 25 N -0.922 5.922 26 Si 0.997 3.003 27 H -0.270 1.270 28 H -0.270 1.270 29 H -0.271 1.271 30 H 0.052 0.948 31 H 0.044 0.956 32 H 0.063 0.937 33 H 0.072 0.928 34 H 0.075 0.925 35 H 0.060 0.940 36 H 0.044 0.956 37 H 0.051 0.949 38 H 0.114 0.886 39 H 0.116 0.884 40 H 0.114 0.886 41 H 0.081 0.919 42 H 0.100 0.900 43 H 0.062 0.938 44 H 0.069 0.931 45 H 0.068 0.932 46 H 0.049 0.951 47 H 0.065 0.935 48 H 0.058 0.942 49 H 0.048 0.952 50 H 0.341 0.659 51 H 0.092 0.908 52 H 0.056 0.944 53 H 0.395 0.605 54 H 0.278 0.722 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.839 -31.539 5.807 32.298 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C -0.150 4.150 3 C -0.094 4.094 4 H 0.070 0.930 5 C -0.208 4.208 6 C -0.167 4.167 7 C 0.292 3.708 8 O -0.446 6.446 9 N -0.343 5.343 10 C -0.019 4.019 11 C -0.168 4.168 12 C -0.157 4.157 13 C -0.155 4.155 14 C 0.049 3.951 15 H 0.089 0.911 16 C -0.046 4.046 17 N -0.314 5.314 18 C -0.061 4.061 19 C 0.228 3.772 20 O -0.505 6.505 21 N -0.210 5.210 22 C -0.464 4.464 23 H 0.099 0.901 24 C -0.215 4.215 25 N -0.563 5.563 26 Si 0.820 3.180 27 H -0.195 1.195 28 H -0.194 1.194 29 H -0.196 1.196 30 H 0.071 0.929 31 H 0.063 0.937 32 H 0.082 0.918 33 H 0.091 0.909 34 H 0.094 0.906 35 H 0.079 0.921 36 H 0.063 0.937 37 H 0.070 0.930 38 H 0.132 0.868 39 H 0.135 0.865 40 H 0.132 0.868 41 H 0.099 0.901 42 H 0.119 0.881 43 H 0.080 0.920 44 H 0.087 0.913 45 H 0.087 0.913 46 H 0.068 0.932 47 H 0.084 0.916 48 H 0.076 0.924 49 H 0.066 0.934 50 H 0.159 0.841 51 H 0.110 0.890 52 H 0.074 0.926 53 H 0.229 0.771 54 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges 4.092 -30.952 5.066 31.630 hybrid contribution -0.760 1.478 0.568 1.757 sum 3.332 -29.474 5.634 30.192 Atomic orbital electron populations 1.21835 0.96210 1.01892 1.01496 1.21544 0.95787 0.94656 1.02985 1.20894 0.93480 0.96841 0.98234 0.92991 1.21933 1.01104 1.00718 0.97019 1.21848 0.96903 0.92021 1.05950 1.21454 0.81554 0.92820 0.75008 1.90722 1.55903 1.46738 1.51276 1.48339 1.06364 1.08362 1.71220 1.22063 0.90909 0.89935 0.98972 1.21914 0.99726 0.97233 0.97923 1.21555 0.96973 0.94648 1.02574 1.21773 0.97060 1.00311 0.96327 1.21094 0.94299 0.81635 0.98074 0.91082 1.22399 0.95062 0.86546 1.00605 1.60140 1.15035 1.01854 1.54325 1.21387 0.93742 0.89346 1.01595 1.20716 0.86781 0.86985 0.82691 1.90467 1.16978 1.85699 1.57374 1.41948 1.09069 1.07253 1.62767 1.19706 0.94039 0.85192 1.47441 0.90083 1.26133 0.95247 1.03649 0.96506 1.69690 1.02525 1.34338 1.49783 0.84869 0.78036 0.76369 0.78684 1.19535 1.19434 1.19562 0.92939 0.93656 0.91778 0.90897 0.90616 0.92129 0.93690 0.92985 0.86824 0.86544 0.86827 0.90062 0.88134 0.91954 0.91271 0.91288 0.93216 0.91618 0.92377 0.93367 0.84079 0.88972 0.92635 0.77132 0.91243 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.89 9.67 71.98 0.70 -1.19 16 2 C -0.11 -1.17 5.40 30.60 0.17 -1.00 16 3 C -0.08 -1.16 2.04 -10.79 -0.02 -1.18 16 4 H 0.05 1.08 7.96 -2.39 -0.02 1.06 16 5 C -0.15 -2.76 8.69 71.98 0.63 -2.13 16 6 C -0.13 -1.55 3.53 29.85 0.11 -1.44 16 7 C 0.50 10.43 7.25 87.66 0.64 11.06 16 8 O -0.57 -16.74 9.52 -3.03 -0.03 -16.77 16 9 N -0.61 -11.12 2.97 -795.03 -2.36 -13.48 16 10 C 0.10 0.97 6.35 86.36 0.55 1.52 16 11 C -0.13 -1.27 6.08 30.67 0.19 -1.08 16 12 C -0.12 -1.82 5.89 30.62 0.18 -1.64 16 13 C -0.12 -2.68 5.11 30.67 0.16 -2.52 16 14 C 0.15 3.65 3.10 44.97 0.14 3.79 16 15 H 0.07 1.67 8.14 -2.39 -0.02 1.65 16 16 C 0.08 2.56 3.59 86.30 0.31 2.87 16 17 N -0.68 -24.93 5.47 -517.92 -2.83 -27.76 16 18 C 0.07 2.93 6.16 85.56 0.53 3.46 16 19 C 0.44 22.76 7.82 87.66 0.69 23.45 16 20 O -0.62 -36.04 15.78 -3.07 -0.05 -36.09 16 21 N -0.57 -31.52 5.29 -307.00 -1.62 -33.14 16 22 C -0.33 -19.84 9.68 84.04 0.81 -19.02 16 23 H 0.08 5.07 7.16 -2.91 -0.02 5.05 16 24 C -0.02 -0.88 5.50 84.93 0.47 -0.42 16 25 N -0.92 -51.96 13.05 21.66 0.28 -51.68 16 26 Si 1.00 44.31 29.55 68.60 2.03 46.34 16 27 H -0.27 -11.61 7.11 99.48 0.71 -10.91 16 28 H -0.27 -11.29 7.11 99.48 0.71 -10.59 16 29 H -0.27 -12.00 7.11 99.48 0.71 -11.30 16 30 H 0.05 0.68 6.57 -2.38 -0.02 0.67 16 31 H 0.04 0.62 8.14 -2.39 -0.02 0.60 16 32 H 0.06 0.61 8.14 -2.39 -0.02 0.59 16 33 H 0.07 0.60 8.14 -2.39 -0.02 0.58 16 34 H 0.08 0.60 8.14 -2.39 -0.02 0.58 16 35 H 0.06 0.89 8.14 -2.39 -0.02 0.87 16 36 H 0.04 1.11 5.95 -2.39 -0.01 1.10 16 37 H 0.05 0.94 6.56 -2.39 -0.02 0.93 16 38 H 0.11 0.89 7.92 -2.39 -0.02 0.88 16 39 H 0.12 0.82 7.72 -2.39 -0.02 0.81 16 40 H 0.11 0.45 5.93 -2.39 -0.01 0.43 16 41 H 0.08 0.64 8.14 -2.39 -0.02 0.62 16 42 H 0.10 0.51 8.14 -2.39 -0.02 0.49 16 43 H 0.06 0.70 8.14 -2.39 -0.02 0.68 16 44 H 0.07 0.98 8.14 -2.39 -0.02 0.96 16 45 H 0.07 1.02 8.14 -2.39 -0.02 1.00 16 46 H 0.05 1.27 8.14 -2.39 -0.02 1.25 16 47 H 0.07 1.84 7.77 -2.39 -0.02 1.82 16 48 H 0.06 2.03 7.24 -2.38 -0.02 2.01 16 49 H 0.05 1.66 6.23 -2.39 -0.01 1.65 16 50 H 0.34 12.65 8.37 -89.69 -0.75 11.90 16 51 H 0.09 3.60 8.14 -2.39 -0.02 3.58 16 52 H 0.06 2.12 8.14 -2.38 -0.02 2.10 16 53 H 0.40 20.90 7.90 -92.71 -0.73 20.16 16 54 H 0.28 14.59 8.31 -92.71 -0.77 13.82 16 Total: -1.00 -74.04 414.34 1.04 -73.00 By element: Atomic # 1 Polarization: 45.66 SS G_CDS: -0.59 Total: 45.07 kcal Atomic # 6 Polarization: 8.30 SS G_CDS: 6.22 Total: 14.52 kcal Atomic # 7 Polarization: -119.53 SS G_CDS: -6.53 Total: -126.07 kcal Atomic # 8 Polarization: -52.78 SS G_CDS: -0.08 Total: -52.86 kcal Atomic # 14 Polarization: 44.31 SS G_CDS: 2.03 Total: 46.34 kcal Total: -74.04 1.04 -73.00 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001505404218.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -30.426 kcal (2) G-P(sol) polarization free energy of solvation -74.040 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -104.465 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.043 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.996 kcal (6) G-S(sol) free energy of system = (1) + (5) -103.422 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.19 seconds