Wall clock time and date at job start Sat Apr 11 2020 05:50:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53006 * 109.46626 * 2 1 4 4 H 1.08992 * 109.47046 * 304.99570 * 3 2 1 5 5 C 1.52997 * 109.47021 * 64.99947 * 3 2 1 6 6 C 1.52999 * 109.46811 * 184.99727 * 3 2 1 7 7 C 1.53004 * 109.47064 * 174.99850 * 6 3 2 8 8 C 1.50698 * 109.46848 * 179.97438 * 7 6 3 9 9 O 1.21281 * 120.00478 * 0.02562 * 8 7 6 10 10 N 1.34785 * 119.99718 * 179.97438 * 8 7 6 11 11 C 1.46497 * 119.99686 * 0.02562 * 10 8 7 12 12 C 1.46498 * 119.99805 * 180.02562 * 10 8 7 13 13 C 1.52994 * 109.46886 * 90.00412 * 12 10 8 14 14 H 1.09002 * 112.74648 * 75.77123 * 13 12 10 15 15 C 1.53513 * 113.47768 * 206.61363 * 13 12 10 16 16 C 1.53506 * 83.57575 * 140.79211 * 15 13 12 17 17 N 1.47476 * 87.93493 * 333.98005 * 16 15 13 18 18 C 1.46892 * 111.00364 * 138.70136 * 17 16 15 19 19 C 1.50704 * 109.46950 * 74.03035 * 18 17 16 20 20 O 1.21293 * 120.00332 * 359.97438 * 19 18 17 21 21 N 1.34781 * 119.99912 * 180.02562 * 19 18 17 22 22 C 1.37095 * 120.00167 * 180.02562 * 21 19 18 23 23 H 1.08001 * 119.99427 * 359.97438 * 22 21 19 24 24 C 1.38942 * 120.00205 * 180.02562 * 22 21 19 25 25 N 1.31414 * 120.00377 * 359.97438 * 24 22 21 26 26 Si 1.86810 * 120.00101 * 179.97438 * 24 22 21 27 27 H 1.48498 * 109.46924 * 89.99402 * 26 24 22 28 28 H 1.48498 * 109.46837 * 209.99678 * 26 24 22 29 29 H 1.48494 * 109.46885 * 329.99621 * 26 24 22 30 30 H 1.08993 * 109.47839 * 299.99931 * 1 2 3 31 31 H 1.09000 * 109.47160 * 60.00369 * 1 2 3 32 32 H 1.09002 * 109.46719 * 180.02562 * 1 2 3 33 33 H 1.08993 * 109.47839 * 240.00069 * 2 1 3 34 34 H 1.09000 * 109.47160 * 119.99631 * 2 1 3 35 35 H 1.09002 * 109.46905 * 179.97438 * 5 3 2 36 36 H 1.09004 * 109.47446 * 299.99458 * 5 3 2 37 37 H 1.08992 * 109.47518 * 59.99913 * 5 3 2 38 38 H 1.09003 * 109.46920 * 294.99990 * 6 3 2 39 39 H 1.08995 * 109.47278 * 54.99923 * 6 3 2 40 40 H 1.08992 * 109.46962 * 300.00150 * 7 6 3 41 41 H 1.09003 * 109.46815 * 60.00164 * 7 6 3 42 42 H 1.09002 * 109.47440 * 89.99586 * 11 10 8 43 43 H 1.08998 * 109.46981 * 209.99661 * 11 10 8 44 44 H 1.09004 * 109.47523 * 329.99542 * 11 10 8 45 45 H 1.09002 * 109.46635 * 210.00119 * 12 10 8 46 46 H 1.08994 * 109.47623 * 330.00171 * 12 10 8 47 47 H 1.08999 * 114.17433 * 254.44106 * 15 13 12 48 48 H 1.09007 * 114.16593 * 27.14320 * 15 13 12 49 49 H 1.09007 * 113.47778 * 219.21293 * 16 15 13 50 50 H 1.09005 * 113.53248 * 88.75582 * 16 15 13 51 51 H 1.08999 * 109.47461 * 194.02689 * 18 17 16 52 52 H 1.08997 * 109.47476 * 314.03438 * 18 17 16 53 53 H 0.96999 * 120.00001 * 359.97438 * 21 19 18 54 54 H 0.96994 * 120.00380 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 1 1.6053 1.9815 -0.8418 5 6 1.6350 2.1266 1.3073 6 6 3.5647 1.4445 -0.1257 7 6 4.0643 2.8852 -0.2511 8 6 5.5663 2.8870 -0.3742 9 8 6.1770 1.8392 -0.3633 10 7 6.2309 4.0531 -0.4976 11 6 5.4931 5.3187 -0.5114 12 6 7.6909 4.0549 -0.6179 13 6 8.0810 3.9711 -2.0949 14 1 7.9437 4.9156 -2.6213 15 6 9.4579 3.3339 -2.3286 16 6 8.7594 2.6781 -3.5279 17 7 7.4873 2.8167 -2.7948 18 6 6.4062 3.2445 -3.6926 19 6 5.9914 2.0884 -4.5658 20 8 6.5425 1.0140 -4.4519 21 7 5.0087 2.2487 -5.4742 22 6 4.6309 1.1969 -6.2683 23 1 5.1211 0.2400 -6.1661 24 6 3.6182 1.3623 -7.2050 25 7 3.0220 2.5268 -7.3296 26 14 3.1039 -0.0707 -8.2875 27 1 2.0202 -0.8332 -7.6174 28 1 2.6137 0.4447 -9.5910 29 1 4.2693 -0.9626 -8.5145 30 1 -0.3634 0.5138 0.8899 31 1 -0.3633 0.5138 -0.8900 32 1 -0.3633 -1.0277 0.0005 33 1 1.8934 -0.5138 -0.8899 34 1 1.8933 -0.5138 0.8900 35 1 1.9987 3.1541 1.3075 36 1 0.5487 2.1253 1.3969 37 1 2.0696 1.5877 2.1491 38 1 4.0028 0.9837 0.7598 39 1 3.8570 0.8802 -1.0112 40 1 3.6262 3.3458 -1.1364 41 1 3.7720 3.4495 0.6345 42 1 5.3942 5.6928 0.5076 43 1 6.0335 6.0477 -1.1152 44 1 4.5026 5.1573 -0.9369 45 1 8.0896 4.9739 -0.1883 46 1 8.1005 3.1970 -0.0847 47 1 10.2383 4.0446 -2.6004 48 1 9.7629 2.6328 -1.5516 49 1 9.0565 1.6419 -3.6902 50 1 8.8036 3.2766 -4.4379 51 1 5.5532 3.5775 -3.1013 52 1 6.7569 4.0650 -4.3185 53 1 4.5681 3.1081 -5.5656 54 1 2.3148 2.6422 -7.9833 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001565830755.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:50:07 Heat of formation + Delta-G solvation = -74.380998 kcal Electronic energy + Delta-G solvation = -31637.435478 eV Core-core repulsion = 27608.966480 eV Total energy + Delta-G solvation = -4028.468999 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 339.231 amu Computer time = 1.09 seconds Orbital eigenvalues (eV) -41.67217 -40.44872 -39.52274 -38.02868 -36.30490 -35.96039 -33.39573 -33.28545 -32.04405 -30.35444 -29.22418 -27.56863 -27.36210 -26.53954 -25.35840 -24.47202 -22.95128 -21.15193 -20.80352 -20.60130 -19.96758 -19.86802 -17.87892 -17.80854 -17.26023 -17.02220 -16.81815 -16.47887 -16.34480 -15.89020 -15.63631 -15.61159 -15.23625 -14.87734 -14.61696 -14.36173 -14.11471 -13.99179 -13.76515 -13.71846 -13.56675 -13.32710 -13.18265 -13.00349 -12.86337 -12.79243 -12.61303 -12.55338 -12.47888 -12.45812 -12.30576 -12.16506 -11.93672 -11.85976 -11.58108 -11.48474 -11.47530 -11.40277 -11.31807 -10.54670 -10.39289 -10.04240 -9.74124 -9.30901 -8.49687 -5.98159 1.33684 1.37060 1.49848 1.89051 2.01313 2.19341 2.26532 2.89594 3.15976 3.31898 3.58426 3.67727 3.81068 3.86137 3.93139 4.11218 4.16311 4.23301 4.25215 4.28124 4.32419 4.40098 4.40867 4.47059 4.49059 4.53442 4.59854 4.64883 4.70021 4.73802 4.80694 4.84329 4.90494 4.96964 5.00958 5.02549 5.06849 5.11103 5.15288 5.21549 5.23007 5.25988 5.31755 5.36768 5.45791 5.53747 5.58241 5.80098 5.91975 6.17716 6.57438 6.59195 7.10154 7.47995 7.51630 8.09628 8.67872 Molecular weight = 339.23amu Principal moments of inertia in cm(-1) A = 0.006392 B = 0.004865 C = 0.003063 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 4379.203851 B = 5753.816872 C = 9140.347255 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.124 4.124 3 C -0.088 4.088 4 H 0.065 0.935 5 C -0.142 4.142 6 C -0.092 4.092 7 C -0.131 4.131 8 C 0.502 3.498 9 O -0.564 6.564 10 N -0.618 5.618 11 C 0.071 3.929 12 C 0.136 3.864 13 C 0.009 3.991 14 H 0.098 0.902 15 C -0.113 4.113 16 C -0.002 4.002 17 N -0.452 5.452 18 C 0.034 3.966 19 C 0.440 3.560 20 O -0.619 6.619 21 N -0.573 5.573 22 C -0.333 4.333 23 H 0.071 0.929 24 C -0.008 4.008 25 N -0.917 5.917 26 Si 0.989 3.011 27 H -0.271 1.271 28 H -0.265 1.265 29 H -0.276 1.276 30 H 0.072 0.928 31 H 0.048 0.952 32 H 0.055 0.945 33 H 0.036 0.964 34 H 0.064 0.936 35 H 0.068 0.932 36 H 0.067 0.933 37 H 0.055 0.945 38 H 0.057 0.943 39 H 0.022 0.978 40 H 0.092 0.908 41 H 0.123 0.877 42 H 0.078 0.922 43 H 0.087 0.913 44 H 0.073 0.927 45 H 0.119 0.881 46 H 0.061 0.939 47 H 0.109 0.891 48 H 0.087 0.913 49 H 0.049 0.951 50 H 0.065 0.935 51 H 0.091 0.909 52 H 0.072 0.928 53 H 0.395 0.605 54 H 0.278 0.722 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.613 12.669 17.605 21.698 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.162 4.162 3 C -0.107 4.107 4 H 0.083 0.917 5 C -0.199 4.199 6 C -0.130 4.130 7 C -0.171 4.171 8 C 0.291 3.709 9 O -0.441 6.441 10 N -0.351 5.351 11 C -0.071 4.071 12 C 0.013 3.987 13 C -0.101 4.101 14 H 0.115 0.885 15 C -0.151 4.151 16 C -0.131 4.131 17 N -0.175 5.175 18 C -0.098 4.098 19 C 0.227 3.773 20 O -0.504 6.504 21 N -0.210 5.210 22 C -0.462 4.462 23 H 0.089 0.911 24 C -0.208 4.208 25 N -0.558 5.558 26 Si 0.812 3.188 27 H -0.197 1.197 28 H -0.189 1.189 29 H -0.201 1.201 30 H 0.091 0.909 31 H 0.067 0.933 32 H 0.074 0.926 33 H 0.055 0.945 34 H 0.083 0.917 35 H 0.087 0.913 36 H 0.086 0.914 37 H 0.074 0.926 38 H 0.076 0.924 39 H 0.041 0.959 40 H 0.111 0.889 41 H 0.141 0.859 42 H 0.096 0.904 43 H 0.105 0.895 44 H 0.092 0.908 45 H 0.136 0.864 46 H 0.080 0.920 47 H 0.127 0.873 48 H 0.105 0.895 49 H 0.067 0.933 50 H 0.083 0.917 51 H 0.109 0.891 52 H 0.090 0.910 53 H 0.229 0.771 54 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges 0.817 10.919 17.923 21.003 hybrid contribution -0.281 -0.129 -1.756 1.783 sum 0.536 10.789 16.167 19.444 Atomic orbital electron populations 1.21787 0.94535 1.01900 1.02302 1.21584 0.97012 0.96533 1.01085 1.21146 0.93490 0.96398 0.99668 0.91695 1.21889 1.01914 1.00668 0.95436 1.21266 0.95714 0.95418 1.00638 1.21744 0.90915 0.99269 1.05130 1.21093 0.90915 0.83378 0.75536 1.90728 1.70659 1.32757 1.49977 1.47845 1.07273 1.06867 1.73137 1.22060 0.97350 0.84283 1.03424 1.21464 0.79988 1.03481 0.93743 1.24033 0.94578 0.94224 0.97284 0.88459 1.23074 0.95702 0.99575 0.96752 1.23618 0.91647 1.00773 0.97063 1.68967 1.01962 1.29023 1.17528 1.22236 0.98292 0.94184 0.95062 1.20784 0.82585 0.90590 0.83329 1.90504 1.57997 1.29980 1.71948 1.41891 1.32890 1.13317 1.32933 1.19566 1.18317 0.92818 1.15508 0.91103 1.25958 0.95793 1.00396 0.98671 1.69654 1.25422 1.24075 1.36679 0.85000 0.78358 0.77661 0.77751 1.19686 1.18945 1.20129 0.90875 0.93256 0.92630 0.94531 0.91719 0.91266 0.91416 0.92626 0.92388 0.95867 0.88945 0.85876 0.90393 0.89461 0.90833 0.86352 0.92033 0.87256 0.89467 0.93269 0.91695 0.89107 0.91043 0.77123 0.91206 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.01 9.67 71.98 0.70 -2.32 16 2 C -0.12 -3.09 5.40 30.60 0.17 -2.92 16 3 C -0.09 -2.09 2.39 -10.79 -0.03 -2.12 16 4 H 0.06 1.61 8.14 -2.39 -0.02 1.60 16 5 C -0.14 -2.38 8.70 71.98 0.63 -1.76 16 6 C -0.09 -2.73 3.97 30.60 0.12 -2.61 16 7 C -0.13 -3.21 4.01 29.85 0.12 -3.09 16 8 C 0.50 15.30 6.78 87.66 0.59 15.90 16 9 O -0.56 -23.60 14.99 -3.03 -0.05 -23.64 16 10 N -0.62 -13.66 2.74 -846.77 -2.32 -15.98 16 11 C 0.07 0.88 10.24 127.77 1.31 2.19 16 12 C 0.14 2.87 5.58 86.38 0.48 3.35 16 13 C 0.01 0.21 3.37 42.18 0.14 0.36 16 14 H 0.10 1.86 7.77 -2.39 -0.02 1.84 16 15 C -0.11 -2.61 8.00 30.94 0.25 -2.36 16 16 C 0.00 -0.06 6.71 83.57 0.56 0.50 16 17 N -0.45 -16.46 4.66 -906.79 -4.23 -20.69 16 18 C 0.03 1.31 5.31 85.56 0.45 1.77 16 19 C 0.44 23.00 7.62 87.66 0.67 23.67 16 20 O -0.62 -38.17 15.34 -3.07 -0.05 -38.22 16 21 N -0.57 -31.16 5.29 -306.98 -1.62 -32.79 16 22 C -0.33 -19.87 9.68 84.04 0.81 -19.06 16 23 H 0.07 4.59 7.16 -2.91 -0.02 4.57 16 24 C -0.01 -0.45 5.50 84.92 0.47 0.01 16 25 N -0.92 -50.25 13.05 21.66 0.28 -49.97 16 26 Si 0.99 44.53 29.55 68.60 2.03 46.55 16 27 H -0.27 -11.91 7.11 99.48 0.71 -11.20 16 28 H -0.27 -11.09 7.11 99.48 0.71 -10.38 16 29 H -0.28 -12.65 7.11 99.48 0.71 -11.95 16 30 H 0.07 1.20 6.56 -2.39 -0.02 1.19 16 31 H 0.05 1.05 8.14 -2.39 -0.02 1.03 16 32 H 0.05 1.07 8.14 -2.39 -0.02 1.05 16 33 H 0.04 1.09 8.14 -2.39 -0.02 1.07 16 34 H 0.06 1.51 8.14 -2.39 -0.02 1.49 16 35 H 0.07 0.95 6.56 -2.39 -0.02 0.93 16 36 H 0.07 0.99 6.57 -2.38 -0.02 0.97 16 37 H 0.05 0.92 8.14 -2.39 -0.02 0.90 16 38 H 0.06 1.76 8.10 -2.39 -0.02 1.74 16 39 H 0.02 0.90 8.10 -2.39 -0.02 0.88 16 40 H 0.09 2.20 7.40 -2.39 -0.02 2.18 16 41 H 0.12 2.07 6.53 -2.39 -0.02 2.05 16 42 H 0.08 0.63 8.14 -2.39 -0.02 0.61 16 43 H 0.09 0.80 8.07 -2.39 -0.02 0.78 16 44 H 0.07 0.91 6.44 -2.38 -0.02 0.90 16 45 H 0.12 1.44 8.07 -2.39 -0.02 1.42 16 46 H 0.06 1.65 7.15 -2.39 -0.02 1.64 16 47 H 0.11 1.74 8.14 -2.39 -0.02 1.72 16 48 H 0.09 2.14 7.94 -2.38 -0.02 2.12 16 49 H 0.05 2.02 8.13 -2.38 -0.02 2.00 16 50 H 0.06 2.10 7.70 -2.38 -0.02 2.08 16 51 H 0.09 3.26 7.68 -2.39 -0.02 3.24 16 52 H 0.07 2.37 7.56 -2.39 -0.02 2.35 16 53 H 0.40 20.18 7.90 -92.71 -0.73 19.45 16 54 H 0.28 14.20 8.31 -92.71 -0.77 13.43 16 Total: -1.00 -83.15 424.72 1.63 -81.52 By element: Atomic # 1 Polarization: 41.57 SS G_CDS: 0.14 Total: 41.71 kcal Atomic # 6 Polarization: 4.06 SS G_CDS: 7.44 Total: 11.51 kcal Atomic # 7 Polarization: -111.54 SS G_CDS: -7.89 Total: -119.42 kcal Atomic # 8 Polarization: -61.77 SS G_CDS: -0.09 Total: -61.86 kcal Atomic # 14 Polarization: 44.53 SS G_CDS: 2.03 Total: 46.55 kcal Total: -83.15 1.63 -81.52 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001565830755.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.135 kcal (2) G-P(sol) polarization free energy of solvation -83.147 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -76.012 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.631 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.516 kcal (6) G-S(sol) free energy of system = (1) + (5) -74.381 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.09 seconds