Wall clock time and date at job start Sat Apr 11 2020 05:50:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53008 * 109.47001 * 2 1 4 4 H 1.08998 * 109.47111 * 55.66054 * 3 2 1 5 5 C 1.52994 * 109.47242 * 295.65390 * 3 2 1 6 6 C 1.52997 * 109.47241 * 175.97925 * 5 3 2 7 7 C 1.53004 * 109.47191 * 175.67535 * 6 5 3 8 8 C 1.53008 * 109.47170 * 295.67367 * 6 5 3 9 9 C 1.50701 * 109.47077 * 175.65681 * 3 2 1 10 10 O 1.21279 * 120.00260 * 84.83019 * 9 3 2 11 11 N 1.34781 * 120.00066 * 264.83768 * 9 3 2 12 12 C 1.46496 * 120.00166 * 174.98541 * 11 9 3 13 13 H 1.08994 * 110.62915 * 31.89053 * 12 11 9 14 14 C 1.55146 * 110.85316 * 268.68411 * 12 11 9 15 15 C 1.54905 * 101.64886 * 205.89334 * 14 12 11 16 16 N 1.47845 * 104.79941 * 37.07368 * 15 14 12 17 17 C 1.46900 * 110.99864 * 213.63647 * 16 15 14 18 18 C 1.50696 * 109.47125 * 290.83893 * 17 16 15 19 19 O 1.21296 * 120.00166 * 359.97438 * 18 17 16 20 20 N 1.34777 * 120.00154 * 180.02562 * 18 17 16 21 21 C 1.37106 * 119.99977 * 179.97438 * 20 18 17 22 22 H 1.08003 * 119.99468 * 359.97438 * 21 20 18 23 23 C 1.38951 * 119.99906 * 179.72104 * 21 20 18 24 24 N 1.31404 * 120.00069 * 180.27276 * 23 21 20 25 25 Si 1.86800 * 119.99913 * 0.27740 * 23 21 20 26 26 H 1.48508 * 109.47172 * 89.99917 * 25 23 21 27 27 H 1.48495 * 109.47089 * 209.99389 * 25 23 21 28 28 H 1.48501 * 109.47158 * 329.99996 * 25 23 21 29 29 C 1.47448 * 108.56438 * 335.90003 * 16 15 14 30 30 H 1.09005 * 109.46467 * 306.18723 * 1 2 3 31 31 H 1.08998 * 109.47321 * 66.18717 * 1 2 3 32 32 H 1.09001 * 109.46804 * 186.19143 * 1 2 3 33 33 H 1.08999 * 109.47216 * 240.00284 * 2 1 3 34 34 H 1.08999 * 109.47738 * 119.99990 * 2 1 3 35 35 H 1.08998 * 109.47742 * 295.98193 * 5 3 2 36 36 H 1.09007 * 109.47362 * 55.98140 * 5 3 2 37 37 H 1.08998 * 109.47282 * 55.67272 * 6 5 3 38 38 H 1.08995 * 109.47378 * 60.00189 * 7 6 5 39 39 H 1.08998 * 109.46986 * 180.02562 * 7 6 5 40 40 H 1.09001 * 109.46949 * 299.99951 * 7 6 5 41 41 H 1.09004 * 109.46431 * 66.09692 * 8 6 5 42 42 H 1.09000 * 109.46966 * 186.09890 * 8 6 5 43 43 H 1.09000 * 109.47026 * 306.09770 * 8 6 5 44 44 H 0.97001 * 119.99344 * 354.98371 * 11 9 3 45 45 H 1.09005 * 110.98639 * 323.98225 * 14 12 11 46 46 H 1.08995 * 110.98915 * 87.80234 * 14 12 11 47 47 H 1.09000 * 110.37448 * 278.23709 * 15 14 12 48 48 H 1.09010 * 110.37064 * 155.89762 * 15 14 12 49 49 H 1.08998 * 109.47338 * 170.83846 * 17 16 15 50 50 H 1.09006 * 109.47111 * 50.83625 * 17 16 15 51 51 H 0.96998 * 120.00131 * 359.97438 * 20 18 17 52 52 H 0.96997 * 120.00299 * 180.02562 * 24 23 21 53 53 H 1.08997 * 109.88607 * 120.40076 * 29 16 15 54 54 H 1.09001 * 109.88817 * 241.58895 * 29 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 1.6145 1.9784 0.8485 5 6 1.6212 2.1316 -1.3002 6 6 2.0436 3.6015 -1.2575 7 6 1.7221 4.2637 -2.5988 8 6 1.2836 4.3183 -0.1396 9 6 3.5431 1.4440 0.1076 10 8 4.2226 1.3235 -0.8897 11 7 4.1324 1.5789 1.3122 12 6 5.5885 1.4704 1.4317 13 1 6.0762 1.8353 0.5279 14 6 6.0106 0.0076 1.7303 15 6 7.3615 0.2146 2.4596 16 7 7.1658 1.4293 3.2794 17 6 8.4117 2.2006 3.3831 18 6 9.4054 1.4393 4.2221 19 8 9.1052 0.3605 4.6881 20 7 10.6275 1.9576 4.4554 21 6 11.5314 1.2651 5.2191 22 1 11.2639 0.3045 5.6340 23 6 12.7933 1.7968 5.4548 24 7 13.6616 1.1307 6.1823 25 14 13.2556 3.4586 4.7377 26 1 12.8965 4.5305 5.7007 27 1 14.7171 3.4962 4.4775 28 1 12.5205 3.6701 3.4648 29 6 6.0929 2.2379 2.6718 30 1 -0.3632 0.6068 0.8295 31 1 -0.3634 0.4149 -0.9401 32 1 -0.3633 -1.0217 0.1108 33 1 1.8933 -0.5138 -0.8900 34 1 1.8934 -0.5138 0.8899 35 1 2.1041 1.6392 -2.1443 36 1 0.5389 2.0677 -1.4131 37 1 3.1150 3.6663 -1.0679 38 1 0.6507 4.1990 -2.7884 39 1 2.0234 5.3108 -2.5685 40 1 2.2635 3.7531 -3.3952 41 1 1.5946 3.9182 0.8255 42 1 1.5020 5.3855 -0.1781 43 1 0.2128 4.1617 -0.2699 44 1 3.5923 1.7479 2.1000 45 1 5.2865 -0.4825 2.3812 46 1 6.1475 -0.5554 0.8071 47 1 8.1629 0.3692 1.7372 48 1 7.5837 -0.6415 3.0969 49 1 8.2050 3.1639 3.8495 50 1 8.8242 2.3604 2.3869 51 1 10.8676 2.8205 4.0830 52 1 14.5423 1.5020 6.3472 53 1 5.2782 2.3681 3.3841 54 1 6.4853 3.2096 2.3722 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001566677398.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:50:25 Heat of formation + Delta-G solvation = -113.835158 kcal Electronic energy + Delta-G solvation = -30094.277678 eV Core-core repulsion = 26064.097818 eV Total energy + Delta-G solvation = -4030.179859 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 339.231 amu Computer time = 1.15 seconds Orbital eigenvalues (eV) -41.43493 -40.58545 -39.28766 -37.63793 -36.04167 -35.40011 -34.98703 -33.75682 -32.23594 -30.09265 -29.45905 -28.21763 -27.98375 -26.15401 -25.62026 -23.10703 -22.36776 -21.80777 -21.47663 -21.24976 -20.46105 -20.22909 -18.41141 -17.80209 -17.35152 -17.05391 -16.52202 -16.24208 -16.09958 -15.99298 -15.59822 -15.29981 -15.13069 -14.94041 -14.69447 -14.55463 -14.34727 -14.25650 -14.15928 -13.68089 -13.40210 -13.37646 -13.23907 -13.06386 -13.01314 -12.89649 -12.70880 -12.66160 -12.43744 -12.42172 -12.25042 -12.16528 -11.98308 -11.92139 -11.89596 -11.49539 -11.48158 -11.38068 -11.22217 -10.69264 -10.42382 -10.23814 -10.06443 -9.27858 -8.40912 -6.01499 1.29800 1.35329 1.43985 1.64211 1.96622 2.11983 2.22921 2.67597 3.13673 3.19759 3.54240 3.61719 3.68366 3.81797 3.90978 3.99692 4.09543 4.16830 4.24847 4.26546 4.29414 4.33218 4.35918 4.44883 4.47210 4.58077 4.62051 4.64662 4.77904 4.81823 4.83155 4.87884 4.90538 4.93850 5.03064 5.04891 5.09907 5.11481 5.17288 5.19763 5.24128 5.35407 5.45374 5.48082 5.52798 5.54334 5.55206 5.85650 5.94292 6.03844 6.57836 6.60456 6.89151 7.28576 7.40508 7.98060 8.76772 Molecular weight = 339.23amu Principal moments of inertia in cm(-1) A = 0.020735 B = 0.001979 C = 0.001868 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1350.034551 B =14147.287356 C =14983.467120 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.112 4.112 3 C -0.099 4.099 4 H 0.117 0.883 5 C -0.096 4.096 6 C -0.101 4.101 7 C -0.145 4.145 8 C -0.146 4.146 9 C 0.519 3.481 10 O -0.583 6.583 11 N -0.708 5.708 12 C 0.132 3.868 13 H 0.082 0.918 14 C -0.128 4.128 15 C 0.053 3.947 16 N -0.522 5.522 17 C 0.047 3.953 18 C 0.451 3.549 19 O -0.606 6.606 20 N -0.593 5.593 21 C -0.326 4.326 22 H 0.055 0.945 23 C -0.017 4.017 24 N -0.935 5.935 25 Si 0.965 3.035 26 H -0.255 1.255 27 H -0.276 1.276 28 H -0.233 1.233 29 C 0.043 3.957 30 H 0.070 0.930 31 H 0.062 0.938 32 H 0.059 0.941 33 H 0.052 0.948 34 H 0.067 0.933 35 H 0.050 0.950 36 H 0.093 0.907 37 H 0.043 0.957 38 H 0.067 0.933 39 H 0.054 0.946 40 H 0.042 0.958 41 H 0.061 0.939 42 H 0.052 0.948 43 H 0.068 0.932 44 H 0.416 0.584 45 H 0.084 0.916 46 H 0.071 0.929 47 H 0.038 0.962 48 H 0.060 0.940 49 H 0.126 0.874 50 H 0.077 0.923 51 H 0.389 0.611 52 H 0.279 0.721 53 H 0.102 0.898 54 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -30.382 9.675 -16.163 35.748 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.150 4.150 3 C -0.120 4.120 4 H 0.135 0.865 5 C -0.134 4.134 6 C -0.119 4.119 7 C -0.202 4.202 8 C -0.203 4.203 9 C 0.307 3.693 10 O -0.462 6.462 11 N -0.360 5.360 12 C 0.025 3.975 13 H 0.100 0.900 14 C -0.167 4.167 15 C -0.075 4.075 16 N -0.247 5.247 17 C -0.084 4.084 18 C 0.239 3.761 19 O -0.490 6.490 20 N -0.236 5.236 21 C -0.455 4.455 22 H 0.073 0.927 23 C -0.215 4.215 24 N -0.576 5.576 25 Si 0.785 3.215 26 H -0.180 1.180 27 H -0.201 1.201 28 H -0.156 1.156 29 C -0.084 4.084 30 H 0.089 0.911 31 H 0.081 0.919 32 H 0.078 0.922 33 H 0.071 0.929 34 H 0.086 0.914 35 H 0.069 0.931 36 H 0.112 0.888 37 H 0.062 0.938 38 H 0.086 0.914 39 H 0.073 0.927 40 H 0.061 0.939 41 H 0.080 0.920 42 H 0.072 0.928 43 H 0.087 0.913 44 H 0.254 0.746 45 H 0.102 0.898 46 H 0.089 0.911 47 H 0.057 0.943 48 H 0.079 0.921 49 H 0.144 0.856 50 H 0.095 0.905 51 H 0.224 0.776 52 H 0.088 0.912 53 H 0.120 0.880 54 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -30.049 8.701 -15.943 35.111 hybrid contribution 1.478 0.492 -0.433 1.617 sum -28.570 9.193 -16.376 34.190 Atomic orbital electron populations 1.21788 0.93259 1.02534 1.02870 1.21434 0.97835 0.93484 1.02231 1.21498 0.89349 0.99217 1.01971 0.86536 1.21585 1.02101 0.94258 0.95463 1.21133 0.99198 0.95068 0.96535 1.21798 1.02006 1.00183 0.96227 1.21890 1.00710 0.99988 0.97709 1.21255 0.91656 0.74018 0.82403 1.90683 1.66897 1.50931 1.37675 1.45923 1.06777 1.72844 1.10424 1.21982 0.81717 0.95060 0.98743 0.89953 1.23024 0.96378 0.97263 1.00066 1.22864 0.96722 0.93790 0.94078 1.63192 1.05700 1.05863 1.49927 1.22125 0.89578 0.97427 0.99290 1.20886 0.83038 0.87470 0.84727 1.90537 1.78559 1.24577 1.55302 1.42040 1.12900 1.20561 1.48066 1.18988 0.94411 1.03938 1.28175 0.92702 1.26118 0.94731 1.03572 0.97118 1.69801 1.07282 1.40920 1.39578 0.85363 0.78842 0.77187 0.80106 1.17970 1.20130 1.15623 1.23135 0.95097 0.96041 0.94161 0.91145 0.91915 0.92184 0.92949 0.91385 0.93088 0.88834 0.93802 0.91437 0.92655 0.93860 0.92040 0.92842 0.91295 0.74605 0.89766 0.91067 0.94348 0.92113 0.85647 0.90502 0.77557 0.91190 0.88003 0.90037 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.05 9.50 71.98 0.68 -0.37 16 2 C -0.11 -1.26 5.39 30.60 0.16 -1.10 16 3 C -0.10 -1.17 2.05 -11.54 -0.02 -1.19 16 4 H 0.12 0.77 6.44 -2.39 -0.02 0.75 16 5 C -0.10 -1.21 3.75 30.59 0.11 -1.10 16 6 C -0.10 -1.32 2.80 -10.79 -0.03 -1.35 16 7 C -0.14 -1.79 9.19 71.98 0.66 -1.13 16 8 C -0.15 -1.28 8.78 71.98 0.63 -0.65 16 9 C 0.52 9.69 5.77 87.66 0.51 10.19 16 10 O -0.58 -16.32 15.59 -3.03 -0.05 -16.37 16 11 N -0.71 -10.89 5.18 -436.95 -2.26 -13.15 16 12 C 0.13 2.67 3.34 46.17 0.15 2.82 16 13 H 0.08 1.97 7.48 -2.39 -0.02 1.95 16 14 C -0.13 -3.08 6.77 31.98 0.22 -2.86 16 15 C 0.05 1.67 5.74 86.77 0.50 2.17 16 16 N -0.52 -15.40 4.86 -890.08 -4.33 -19.73 16 17 C 0.05 1.45 5.05 85.56 0.43 1.88 16 18 C 0.45 20.54 7.58 87.66 0.66 21.20 16 19 O -0.61 -33.78 14.61 -3.08 -0.04 -33.83 16 20 N -0.59 -28.21 5.09 -306.97 -1.56 -29.78 16 21 C -0.33 -19.25 10.16 84.04 0.85 -18.39 16 22 H 0.05 3.86 7.39 -2.91 -0.02 3.84 16 23 C -0.02 -0.95 5.50 84.93 0.47 -0.48 16 24 N -0.93 -56.83 13.96 21.66 0.30 -56.53 16 25 Si 0.97 39.09 27.74 68.60 1.90 40.99 16 26 H -0.26 -9.74 7.11 99.48 0.71 -9.04 16 27 H -0.28 -11.14 7.11 99.48 0.71 -10.43 16 28 H -0.23 -7.96 6.51 99.48 0.65 -7.32 16 29 C 0.04 0.85 6.61 86.64 0.57 1.42 16 30 H 0.07 0.34 8.14 -2.38 -0.02 0.32 16 31 H 0.06 0.41 6.77 -2.39 -0.02 0.39 16 32 H 0.06 0.43 8.14 -2.39 -0.02 0.41 16 33 H 0.05 0.79 8.14 -2.39 -0.02 0.77 16 34 H 0.07 0.76 8.14 -2.39 -0.02 0.74 16 35 H 0.05 0.91 7.72 -2.39 -0.02 0.89 16 36 H 0.09 0.79 6.50 -2.38 -0.02 0.78 16 37 H 0.04 0.81 7.04 -2.39 -0.02 0.80 16 38 H 0.07 0.64 8.14 -2.39 -0.02 0.62 16 39 H 0.05 0.65 8.14 -2.39 -0.02 0.63 16 40 H 0.04 0.63 8.14 -2.39 -0.02 0.61 16 41 H 0.06 0.44 6.76 -2.39 -0.02 0.43 16 42 H 0.05 0.49 8.14 -2.39 -0.02 0.47 16 43 H 0.07 0.44 8.14 -2.39 -0.02 0.42 16 44 H 0.42 3.88 8.33 -92.71 -0.77 3.11 16 45 H 0.08 1.92 8.14 -2.38 -0.02 1.90 16 46 H 0.07 1.77 8.14 -2.39 -0.02 1.75 16 47 H 0.04 1.22 7.62 -2.39 -0.02 1.20 16 48 H 0.06 2.34 7.38 -2.38 -0.02 2.32 16 49 H 0.13 3.03 8.03 -2.39 -0.02 3.01 16 50 H 0.08 2.03 7.85 -2.38 -0.02 2.01 16 51 H 0.39 15.28 5.76 -92.71 -0.53 14.75 16 52 H 0.28 15.47 8.31 -92.71 -0.77 14.70 16 53 H 0.10 1.62 7.72 -2.39 -0.02 1.60 16 54 H 0.08 1.33 7.55 -2.39 -0.02 1.31 16 Total: -1.00 -81.68 419.96 0.05 -81.63 By element: Atomic # 1 Polarization: 36.17 SS G_CDS: -0.48 Total: 35.70 kcal Atomic # 6 Polarization: 4.50 SS G_CDS: 6.57 Total: 11.07 kcal Atomic # 7 Polarization: -111.33 SS G_CDS: -7.85 Total: -119.19 kcal Atomic # 8 Polarization: -50.11 SS G_CDS: -0.09 Total: -50.20 kcal Atomic # 14 Polarization: 39.09 SS G_CDS: 1.90 Total: 40.99 kcal Total: -81.68 0.05 -81.63 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001566677398.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -32.202 kcal (2) G-P(sol) polarization free energy of solvation -81.684 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -113.886 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.051 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.633 kcal (6) G-S(sol) free energy of system = (1) + (5) -113.835 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.15 seconds