Wall clock time and date at job start Sat Apr 11 2020 05:50:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53003 * 109.47184 * 2 1 4 4 C 1.50703 * 109.46586 * 179.97438 * 3 2 1 5 5 O 1.21271 * 120.00481 * 359.97438 * 4 3 2 6 6 N 1.34787 * 119.99322 * 179.97438 * 4 3 2 7 7 C 1.46919 * 120.63110 * 3.64378 * 6 4 3 8 8 C 1.53190 * 108.77647 * 126.36695 * 7 6 4 9 9 C 1.53044 * 109.31221 * 54.63198 * 8 7 6 10 10 C 1.53035 * 109.53946 * 298.63726 * 9 8 7 11 11 C 1.46926 * 120.62774 * 183.61758 * 6 4 3 12 12 H 1.08993 * 109.58321 * 113.84548 * 11 6 4 13 13 C 1.50703 * 109.58406 * 353.42055 * 11 6 4 14 14 O 1.21278 * 120.00448 * 294.12938 * 13 11 6 15 15 N 1.34779 * 119.99920 * 114.13832 * 13 11 6 16 16 C 1.46494 * 119.99930 * 179.97438 * 15 13 11 17 17 C 1.53003 * 109.46882 * 179.97438 * 16 15 13 18 18 N 1.46506 * 109.47127 * 179.97438 * 17 16 15 19 19 C 1.36939 * 119.99471 * 90.00327 * 18 17 16 20 20 H 1.07996 * 120.00052 * 5.22501 * 19 18 17 21 21 C 1.38810 * 119.99816 * 185.21946 * 19 18 17 22 22 N 1.31621 * 119.99709 * 34.50367 * 21 19 18 23 23 Si 1.86800 * 120.00439 * 214.50245 * 21 19 18 24 24 H 1.48498 * 109.47050 * 94.99683 * 23 21 19 25 25 H 1.48492 * 109.47243 * 215.00435 * 23 21 19 26 26 H 1.48501 * 109.46603 * 334.99880 * 23 21 19 27 27 C 1.46500 * 120.00179 * 270.00492 * 18 17 16 28 28 C 1.53005 * 109.47081 * 84.68146 * 27 18 17 29 29 H 1.09006 * 109.47318 * 300.00620 * 1 2 3 30 30 H 1.09005 * 109.47131 * 60.00523 * 1 2 3 31 31 H 1.09005 * 109.47124 * 180.02562 * 1 2 3 32 32 H 1.08996 * 109.47212 * 239.99243 * 2 1 3 33 33 H 1.09005 * 109.46787 * 119.99898 * 2 1 3 34 34 H 1.08993 * 109.47008 * 59.99822 * 3 2 1 35 35 H 1.09000 * 109.46526 * 299.99038 * 3 2 1 36 36 H 1.08998 * 109.58657 * 246.15122 * 7 6 4 37 37 H 1.09000 * 109.59202 * 6.58050 * 7 6 4 38 38 H 1.08996 * 109.50411 * 174.58366 * 8 7 6 39 39 H 1.09004 * 109.50036 * 294.65074 * 8 7 6 40 40 H 1.09001 * 109.45748 * 58.65911 * 9 8 7 41 41 H 1.09007 * 109.45939 * 178.61477 * 9 8 7 42 42 H 1.09000 * 109.49664 * 301.41272 * 10 9 8 43 43 H 1.08998 * 109.50160 * 181.32052 * 10 9 8 44 44 H 0.97007 * 119.99804 * 359.97438 * 15 13 11 45 45 H 1.08990 * 109.47571 * 299.99392 * 16 15 13 46 46 H 1.09000 * 109.46869 * 59.99937 * 16 15 13 47 47 H 1.08998 * 109.47524 * 299.99926 * 17 16 15 48 48 H 1.09000 * 109.46877 * 60.00607 * 17 16 15 49 49 H 0.97005 * 120.00063 * 179.97438 * 22 21 19 50 50 H 1.09000 * 109.46747 * 204.68089 * 27 18 17 51 51 H 1.09002 * 109.47021 * 324.67868 * 27 18 17 52 52 H 1.08994 * 109.46545 * 300.00056 * 28 27 18 53 53 H 1.08995 * 109.46786 * 59.99798 * 28 27 18 54 54 H 1.08991 * 109.46755 * 179.97438 * 28 27 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5470 1.4424 0.0006 5 8 4.1534 0.3921 0.0015 6 7 4.2209 2.6097 0.0002 7 6 3.5026 3.8888 0.0795 8 6 4.0740 4.7039 1.2439 9 6 5.5881 4.8430 1.0694 10 6 6.2349 3.4562 1.0872 11 6 5.6880 2.6270 -0.0789 12 1 5.9976 3.0753 -1.0229 13 6 6.2154 1.2182 0.0117 14 8 6.0766 0.5834 1.0357 15 7 6.8416 0.6637 -1.0452 16 6 7.3548 -0.7055 -0.9569 17 6 8.0149 -1.0892 -2.2828 18 7 8.5287 -2.4583 -2.1943 19 6 7.7311 -3.5132 -2.5496 20 1 6.7546 -3.3328 -2.9743 21 6 8.1776 -4.8143 -2.3641 22 7 8.9375 -5.1081 -1.3303 23 14 7.7002 -6.1484 -3.5814 24 1 8.7745 -6.3009 -4.5951 25 1 7.5139 -7.4329 -2.8602 26 1 6.4324 -5.7715 -4.2566 27 6 9.8958 -2.6989 -1.7257 28 6 9.9102 -2.7436 -0.1964 29 1 -0.3634 0.5139 0.8900 30 1 -0.3634 0.5138 -0.8901 31 1 -0.3633 -1.0277 0.0005 32 1 1.8933 -0.5139 -0.8899 33 1 1.8933 -0.5138 0.8901 34 1 1.6767 1.9563 0.8899 35 1 1.6768 1.9562 -0.8901 36 1 3.6341 4.4400 -0.8516 37 1 2.4422 3.7025 0.2496 38 1 3.6166 5.6932 1.2546 39 1 3.8609 4.1945 2.1838 40 1 5.8006 5.3307 0.1180 41 1 5.9938 5.4435 1.8837 42 1 6.0020 2.9582 2.0285 43 1 7.3155 3.5574 0.9864 44 1 6.9524 1.1714 -1.8644 45 1 8.0891 -0.7673 -0.1539 46 1 6.5316 -1.3894 -0.7499 47 1 7.2803 -1.0276 -3.0857 48 1 8.8380 -0.4054 -2.4900 49 1 9.2493 -6.0175 -1.2004 50 1 10.2530 -3.6500 -2.1204 51 1 10.5453 -1.8949 -2.0719 52 1 9.5529 -1.7925 0.1982 53 1 9.2607 -3.5476 0.1497 54 1 10.9272 -2.9230 0.1521 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001567354341.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:50:39 Heat of formation + Delta-G solvation = -71.538811 kcal Electronic energy + Delta-G solvation = -31510.812827 eV Core-core repulsion = 27482.467074 eV Total energy + Delta-G solvation = -4028.345752 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 339.231 amu Computer time = 1.39 seconds Orbital eigenvalues (eV) -41.98042 -39.77426 -38.48939 -38.09329 -35.70334 -35.35943 -33.90125 -33.41424 -32.51915 -31.44576 -29.39532 -29.00212 -26.60253 -25.83900 -24.73566 -23.54966 -23.00369 -22.23920 -21.58443 -21.44760 -19.85950 -18.83857 -18.50212 -17.49239 -17.33086 -16.90376 -16.72678 -16.43096 -16.21362 -15.60468 -15.47527 -15.34952 -15.19326 -15.01113 -14.74290 -14.60694 -14.32283 -14.07843 -13.91274 -13.81714 -13.76032 -13.46418 -13.30281 -12.97335 -12.87398 -12.69568 -12.67470 -12.49285 -12.29945 -12.25064 -12.15132 -11.99172 -11.84068 -11.72125 -11.70537 -11.63727 -11.57300 -11.32867 -10.69555 -10.49657 -10.35261 -9.93183 -9.64723 -8.98720 -7.92309 -5.12804 1.45589 1.48445 1.52944 1.57108 1.64502 2.25501 2.31663 2.55639 3.15735 3.48410 3.69194 3.79291 3.85600 3.89444 3.94467 4.04546 4.08533 4.13699 4.21443 4.22664 4.36618 4.45476 4.55521 4.61571 4.63405 4.64551 4.66212 4.72784 4.83203 4.83913 4.88877 4.89858 5.06849 5.07398 5.09281 5.14196 5.14304 5.20137 5.21258 5.22698 5.30344 5.40036 5.45593 5.51728 5.55353 5.65468 5.70123 6.06152 6.27474 6.35665 6.72906 7.14646 7.19996 7.57632 7.87092 8.27163 9.12638 Molecular weight = 339.23amu Principal moments of inertia in cm(-1) A = 0.012086 B = 0.003092 C = 0.002596 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2316.163078 B = 9054.909175 C =10782.453162 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.113 4.113 3 C -0.121 4.121 4 C 0.483 3.517 5 O -0.555 6.555 6 N -0.605 5.605 7 C 0.102 3.898 8 C -0.136 4.136 9 C -0.111 4.111 10 C -0.120 4.120 11 C 0.132 3.868 12 H 0.120 0.880 13 C 0.522 3.478 14 O -0.583 6.583 15 N -0.716 5.716 16 C 0.127 3.873 17 C 0.150 3.850 18 N -0.605 5.605 19 C -0.274 4.274 20 H 0.067 0.933 21 C -0.041 4.041 22 N -0.905 5.905 23 Si 0.948 3.052 24 H -0.283 1.283 25 H -0.300 1.300 26 H -0.275 1.275 27 C 0.169 3.831 28 C -0.144 4.144 29 H 0.069 0.931 30 H 0.073 0.927 31 H 0.050 0.950 32 H 0.041 0.959 33 H 0.035 0.965 34 H 0.117 0.883 35 H 0.126 0.874 36 H 0.100 0.900 37 H 0.109 0.891 38 H 0.110 0.890 39 H 0.049 0.951 40 H 0.090 0.910 41 H 0.079 0.921 42 H 0.042 0.958 43 H 0.081 0.919 44 H 0.408 0.592 45 H 0.035 0.965 46 H 0.009 0.991 47 H 0.056 0.944 48 H 0.076 0.924 49 H 0.249 0.751 50 H 0.053 0.947 51 H 0.040 0.960 52 H 0.020 0.980 53 H 0.052 0.948 54 H 0.039 0.961 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.358 28.473 0.473 31.454 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.152 4.152 3 C -0.160 4.160 4 C 0.272 3.728 5 O -0.432 6.432 6 N -0.341 5.341 7 C -0.018 4.018 8 C -0.174 4.174 9 C -0.148 4.148 10 C -0.159 4.159 11 C 0.025 3.975 12 H 0.138 0.862 13 C 0.310 3.690 14 O -0.462 6.462 15 N -0.370 5.370 16 C 0.000 4.000 17 C 0.023 3.977 18 N -0.327 5.327 19 C -0.403 4.403 20 H 0.085 0.915 21 C -0.238 4.238 22 N -0.550 5.550 23 Si 0.776 3.224 24 H -0.210 1.210 25 H -0.227 1.227 26 H -0.200 1.200 27 C 0.044 3.956 28 C -0.203 4.203 29 H 0.088 0.912 30 H 0.092 0.908 31 H 0.069 0.931 32 H 0.060 0.940 33 H 0.054 0.946 34 H 0.135 0.865 35 H 0.144 0.856 36 H 0.118 0.882 37 H 0.127 0.873 38 H 0.128 0.872 39 H 0.068 0.932 40 H 0.108 0.892 41 H 0.098 0.902 42 H 0.061 0.939 43 H 0.100 0.900 44 H 0.244 0.756 45 H 0.054 0.946 46 H 0.027 0.973 47 H 0.074 0.926 48 H 0.095 0.905 49 H 0.058 0.942 50 H 0.071 0.929 51 H 0.058 0.942 52 H 0.039 0.961 53 H 0.071 0.929 54 H 0.058 0.942 Dipole moment (debyes) X Y Z Total from point charges -13.075 27.299 1.223 30.294 hybrid contribution 0.140 -1.581 -0.191 1.599 sum -12.935 25.718 1.032 28.807 Atomic orbital electron populations 1.21723 0.92758 1.02233 1.03203 1.21263 0.97413 0.95555 1.00938 1.21726 0.88343 0.99351 1.06583 1.21826 0.92398 0.83151 0.75375 1.90901 1.69509 1.33026 1.49796 1.48259 1.04511 1.07569 1.73809 1.22194 0.97285 0.81819 1.00511 1.21973 0.95951 1.01636 0.97818 1.21521 0.95309 0.93849 1.04139 1.21828 1.01062 0.96897 0.96087 1.21251 0.82095 0.91778 1.02339 0.86248 1.20669 0.76350 0.88773 0.83237 1.90645 1.57920 1.64431 1.33208 1.45783 1.59587 1.15301 1.16280 1.21868 0.95866 0.81658 1.00646 1.21040 0.97277 0.86066 0.93347 1.44505 1.10989 1.01334 1.75865 1.19414 1.00399 0.86073 1.34417 0.91473 1.25317 1.01145 0.98683 0.98651 1.70423 1.40820 1.18806 1.24972 0.85536 0.77875 0.78721 0.80219 1.21025 1.22741 1.20034 1.20698 0.83920 0.98409 0.92606 1.22231 0.99588 0.99259 0.99226 0.91154 0.90793 0.93071 0.93975 0.94634 0.86504 0.85553 0.88219 0.87261 0.87194 0.93172 0.89152 0.90249 0.93860 0.90047 0.75568 0.94621 0.97273 0.92607 0.90541 0.94169 0.92881 0.94211 0.96063 0.92940 0.94160 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.21 9.91 71.98 0.71 -1.50 16 2 C -0.11 -2.68 5.22 30.59 0.16 -2.52 16 3 C -0.12 -2.14 4.08 29.85 0.12 -2.01 16 4 C 0.48 13.49 7.56 87.66 0.66 14.15 16 5 O -0.55 -23.31 11.53 20.71 0.24 -23.07 16 6 N -0.61 -12.34 2.97 -799.21 -2.38 -14.72 16 7 C 0.10 0.88 6.33 86.36 0.55 1.43 16 8 C -0.14 -1.09 6.08 30.67 0.19 -0.90 16 9 C -0.11 -1.09 5.88 30.62 0.18 -0.91 16 10 C -0.12 -2.34 5.29 30.67 0.16 -2.17 16 11 C 0.13 3.02 3.31 44.23 0.15 3.17 16 12 H 0.12 1.85 7.94 -2.39 -0.02 1.83 16 13 C 0.52 18.99 4.37 87.66 0.38 19.38 16 14 O -0.58 -28.37 14.53 20.69 0.30 -28.06 16 15 N -0.72 -25.01 5.56 -463.07 -2.57 -27.58 16 16 C 0.13 5.71 5.89 86.38 0.51 6.22 16 17 C 0.15 6.30 5.82 86.38 0.50 6.80 16 18 N -0.61 -31.37 2.53 -701.98 -1.78 -33.15 16 19 C -0.27 -15.82 9.63 84.03 0.81 -15.02 16 20 H 0.07 3.91 8.01 -2.91 -0.02 3.89 16 21 C -0.04 -2.40 4.66 84.86 0.40 -2.00 16 22 N -0.91 -54.32 9.12 21.65 0.20 -54.12 16 23 Si 0.95 46.59 29.67 68.60 2.04 48.62 16 24 H -0.28 -13.58 7.11 99.48 0.71 -12.87 16 25 H -0.30 -14.91 7.11 99.48 0.71 -14.20 16 26 H -0.28 -13.18 7.11 99.48 0.71 -12.47 16 27 C 0.17 8.41 5.65 86.38 0.49 8.90 16 28 C -0.14 -7.18 9.66 71.98 0.70 -6.49 16 29 H 0.07 0.87 8.14 -2.38 -0.02 0.85 16 30 H 0.07 0.87 8.14 -2.38 -0.02 0.85 16 31 H 0.05 0.87 8.14 -2.38 -0.02 0.85 16 32 H 0.04 1.21 8.10 -2.39 -0.02 1.19 16 33 H 0.03 1.06 8.10 -2.38 -0.02 1.04 16 34 H 0.12 1.43 7.54 -2.39 -0.02 1.41 16 35 H 0.13 1.34 8.07 -2.39 -0.02 1.32 16 36 H 0.10 0.38 8.14 -2.39 -0.02 0.36 16 37 H 0.11 0.50 5.95 -2.39 -0.01 0.49 16 38 H 0.11 0.24 8.14 -2.39 -0.02 0.22 16 39 H 0.05 0.62 8.14 -2.38 -0.02 0.60 16 40 H 0.09 0.53 8.14 -2.39 -0.02 0.51 16 41 H 0.08 0.68 8.14 -2.38 -0.02 0.66 16 42 H 0.04 1.16 7.86 -2.39 -0.02 1.14 16 43 H 0.08 1.48 8.14 -2.39 -0.02 1.46 16 44 H 0.41 10.55 8.33 -92.70 -0.77 9.77 16 45 H 0.04 1.76 5.95 -2.39 -0.01 1.75 16 46 H 0.01 0.50 8.14 -2.39 -0.02 0.48 16 47 H 0.06 2.26 8.03 -2.39 -0.02 2.24 16 48 H 0.08 2.69 7.94 -2.39 -0.02 2.67 16 49 H 0.25 14.49 8.31 -92.70 -0.77 13.72 16 50 H 0.05 2.93 6.00 -2.39 -0.01 2.91 16 51 H 0.04 1.71 7.97 -2.39 -0.02 1.69 16 52 H 0.02 1.00 5.99 -2.39 -0.01 0.99 16 53 H 0.05 3.06 6.29 -2.39 -0.02 3.04 16 54 H 0.04 1.79 8.14 -2.39 -0.02 1.77 16 Total: -1.00 -88.21 412.56 2.81 -85.41 By element: Atomic # 1 Polarization: 20.06 SS G_CDS: 0.10 Total: 20.15 kcal Atomic # 6 Polarization: 19.85 SS G_CDS: 6.66 Total: 26.51 kcal Atomic # 7 Polarization: -123.03 SS G_CDS: -6.53 Total: -129.56 kcal Atomic # 8 Polarization: -51.67 SS G_CDS: 0.54 Total: -51.13 kcal Atomic # 14 Polarization: 46.59 SS G_CDS: 2.04 Total: 48.62 kcal Total: -88.21 2.81 -85.41 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001567354341.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.869 kcal (2) G-P(sol) polarization free energy of solvation -88.215 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -74.346 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.807 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -85.408 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.539 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.40 seconds