Wall clock time and date at job start Sat Apr 11 2020 05:50:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52997 * 109.47035 * 2 1 4 4 C 1.50701 * 109.47200 * 179.97438 * 3 2 1 5 5 O 1.21279 * 119.99978 * 0.02562 * 4 3 2 6 6 N 1.34778 * 119.99755 * 179.97438 * 4 3 2 7 7 C 1.46957 * 120.65560 * 5.48162 * 6 4 3 8 8 C 1.53190 * 108.88993 * 233.53365 * 7 6 4 9 9 C 1.53036 * 109.31307 * 305.44838 * 8 7 6 10 10 C 1.53041 * 109.54048 * 61.36472 * 9 8 7 11 11 C 1.46932 * 120.62538 * 185.66580 * 6 4 3 12 12 H 1.08997 * 109.58693 * 246.32053 * 11 6 4 13 13 C 1.50697 * 109.58655 * 6.60504 * 11 6 4 14 14 O 1.21283 * 120.00200 * 63.86188 * 13 11 6 15 15 N 1.34773 * 119.99846 * 243.86086 * 13 11 6 16 16 C 1.46497 * 120.00067 * 180.02562 * 15 13 11 17 17 C 1.53008 * 109.47515 * 179.97438 * 16 15 13 18 18 N 1.46494 * 109.47196 * 179.97438 * 17 16 15 19 19 C 1.36935 * 119.99670 * 90.00465 * 18 17 16 20 20 H 1.08001 * 120.00446 * 43.45697 * 19 18 17 21 21 C 1.38812 * 120.00092 * 223.18090 * 19 18 17 22 22 N 1.31618 * 120.00143 * 209.64201 * 21 19 18 23 23 Si 1.86806 * 119.99550 * 29.63945 * 21 19 18 24 24 H 1.48501 * 109.47070 * 86.43521 * 23 21 19 25 25 H 1.48507 * 109.46819 * 206.43275 * 23 21 19 26 26 H 1.48492 * 109.47194 * 326.43060 * 23 21 19 27 27 C 1.46497 * 120.00092 * 269.99925 * 18 17 16 28 28 C 1.53007 * 109.47093 * 275.10295 * 27 18 17 29 29 H 1.09005 * 109.47270 * 299.99728 * 1 2 3 30 30 H 1.08992 * 109.47066 * 60.00121 * 1 2 3 31 31 H 1.09002 * 109.46752 * 180.02562 * 1 2 3 32 32 H 1.08996 * 109.47191 * 240.00014 * 2 1 3 33 33 H 1.09009 * 109.46971 * 120.00049 * 2 1 3 34 34 H 1.09005 * 109.46870 * 60.00027 * 3 2 1 35 35 H 1.09003 * 109.47305 * 300.00305 * 3 2 1 36 36 H 1.09008 * 109.46547 * 113.75280 * 7 6 4 37 37 H 1.08991 * 109.71500 * 353.46976 * 7 6 4 38 38 H 1.08996 * 109.50061 * 185.49035 * 8 7 6 39 39 H 1.09003 * 109.51898 * 65.41515 * 8 7 6 40 40 H 1.09004 * 109.46340 * 301.33927 * 9 8 7 41 41 H 1.09007 * 109.46016 * 181.38244 * 9 8 7 42 42 H 1.08998 * 109.49832 * 178.68795 * 10 9 8 43 43 H 1.08995 * 109.52834 * 58.60200 * 10 9 8 44 44 H 0.96997 * 120.00175 * 0.02562 * 15 13 11 45 45 H 1.09003 * 109.47270 * 60.00050 * 16 15 13 46 46 H 1.09002 * 109.47011 * 299.99854 * 16 15 13 47 47 H 1.09003 * 109.46810 * 59.99769 * 17 16 15 48 48 H 1.08993 * 109.46800 * 300.00529 * 17 16 15 49 49 H 0.97005 * 119.99542 * 179.97438 * 22 21 19 50 50 H 1.08999 * 109.47199 * 35.10687 * 27 18 17 51 51 H 1.09004 * 109.47266 * 155.10894 * 27 18 17 52 52 H 1.09004 * 109.46825 * 184.92835 * 28 27 18 53 53 H 1.09000 * 109.47079 * 304.92890 * 28 27 18 54 54 H 1.08996 * 109.46897 * 64.92935 * 28 27 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5470 1.4425 0.0006 5 8 4.1534 0.3922 0.0006 6 7 4.2208 2.6098 0.0002 7 6 3.5055 3.8879 0.1199 8 6 3.9173 4.7974 -1.0419 9 6 5.4418 4.9300 -1.0652 10 6 6.0721 3.5525 -1.2832 11 6 5.6848 2.6289 -0.1240 12 1 6.1252 2.9997 0.8015 13 6 6.1867 1.2349 -0.3993 14 8 5.8735 0.6692 -1.4254 15 7 6.9836 0.6168 0.4947 16 6 7.4720 -0.7381 0.2269 17 6 8.3499 -1.2033 1.3906 18 7 8.8377 -2.5584 1.1229 19 6 10.0206 -2.7412 0.4577 20 1 10.8803 -2.1376 0.7087 21 6 10.1164 -3.7064 -0.5353 22 7 11.2682 -4.2995 -0.7677 23 14 8.6106 -4.1636 -1.5418 24 1 8.4861 -3.2366 -2.6953 25 1 8.7513 -5.5560 -2.0387 26 1 7.3974 -4.0617 -0.6917 27 6 8.0602 -3.7179 1.5670 28 6 8.4061 -4.0365 3.0231 29 1 -0.3634 0.5138 0.8900 30 1 -0.3633 0.5138 -0.8899 31 1 -0.3633 -1.0277 0.0005 32 1 1.8934 -0.5138 -0.8899 33 1 1.8934 -0.5139 0.8901 34 1 1.6766 1.9563 0.8900 35 1 1.6766 1.9564 -0.8900 36 1 3.7662 4.3629 1.0658 37 1 2.4305 3.7124 0.0833 38 1 3.4685 5.7819 -0.9101 39 1 3.5754 4.3647 -1.9821 40 1 5.7852 5.3403 -0.1155 41 1 5.7360 5.5964 -1.8761 42 1 7.1569 3.6510 -1.3230 43 1 5.7105 3.1307 -2.2209 44 1 7.2338 1.0691 1.3155 45 1 8.0579 -0.7381 -0.6923 46 1 6.6245 -1.4148 0.1175 47 1 7.7643 -1.2032 2.3100 48 1 9.1972 -0.5264 1.4995 49 1 11.3350 -4.9742 -1.4614 50 1 6.9964 -3.4943 1.4868 51 1 8.2992 -4.5772 0.9405 52 1 7.8946 -4.9500 3.3264 53 1 9.4831 -4.1741 3.1189 54 1 8.0868 -3.2124 3.6610 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001567354342.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:50:43 Heat of formation + Delta-G solvation = -83.555176 kcal Electronic energy + Delta-G solvation = -31532.045061 eV Core-core repulsion = 27503.178240 eV Total energy + Delta-G solvation = -4028.866821 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 339.231 amu Computer time = 1.42 seconds Orbital eigenvalues (eV) -42.00264 -39.81383 -38.51497 -38.15778 -35.72095 -35.37310 -33.94855 -33.91139 -32.68958 -31.63367 -29.49318 -29.02401 -26.64425 -25.69294 -24.79975 -24.11242 -23.14636 -22.00947 -21.58509 -21.50525 -19.89302 -18.82896 -18.52267 -17.56832 -17.43449 -17.08426 -16.82818 -16.60342 -16.16161 -15.81196 -15.50645 -15.33670 -15.23986 -15.05341 -14.85367 -14.76773 -14.58497 -14.35034 -14.04848 -13.87921 -13.81038 -13.59954 -13.45265 -13.04073 -12.87341 -12.86191 -12.71154 -12.66190 -12.51724 -12.28398 -12.17107 -12.00908 -11.96149 -11.73913 -11.71499 -11.69998 -11.59180 -11.45079 -10.74144 -10.67438 -10.58755 -10.00129 -9.66700 -8.75390 -8.34117 -5.67842 1.23420 1.33893 1.44543 1.48474 1.65769 2.19704 2.27173 2.35053 2.93170 3.36779 3.57728 3.76505 3.83511 3.85544 3.93929 4.04854 4.06867 4.11639 4.17318 4.20379 4.29328 4.33609 4.44422 4.55074 4.60650 4.62784 4.65944 4.70906 4.71139 4.75485 4.81384 4.83503 4.88076 4.95498 5.05404 5.07175 5.12554 5.13236 5.19138 5.21253 5.21811 5.23362 5.39448 5.44258 5.49250 5.51323 5.56541 5.89478 6.16994 6.34765 6.67976 6.96770 7.16856 7.49830 7.57042 8.04113 8.85933 Molecular weight = 339.23amu Principal moments of inertia in cm(-1) A = 0.012078 B = 0.003230 C = 0.002883 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2317.643917 B = 8665.713748 C = 9709.708934 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.112 4.112 3 C -0.122 4.122 4 C 0.488 3.512 5 O -0.556 6.556 6 N -0.605 5.605 7 C 0.103 3.897 8 C -0.136 4.136 9 C -0.111 4.111 10 C -0.121 4.121 11 C 0.134 3.866 12 H 0.119 0.881 13 C 0.523 3.477 14 O -0.589 6.589 15 N -0.712 5.712 16 C 0.124 3.876 17 C 0.148 3.852 18 N -0.609 5.609 19 C -0.264 4.264 20 H 0.049 0.951 21 C 0.010 3.990 22 N -0.926 5.926 23 Si 0.902 3.098 24 H -0.306 1.306 25 H -0.291 1.291 26 H -0.251 1.251 27 C 0.135 3.865 28 C -0.150 4.150 29 H 0.074 0.926 30 H 0.065 0.935 31 H 0.052 0.948 32 H 0.033 0.967 33 H 0.048 0.952 34 H 0.129 0.871 35 H 0.112 0.888 36 H 0.098 0.902 37 H 0.111 0.889 38 H 0.109 0.891 39 H 0.051 0.949 40 H 0.089 0.911 41 H 0.078 0.922 42 H 0.079 0.921 43 H 0.044 0.956 44 H 0.411 0.589 45 H 0.023 0.977 46 H 0.023 0.977 47 H 0.074 0.926 48 H 0.065 0.935 49 H 0.265 0.735 50 H 0.042 0.958 51 H 0.032 0.968 52 H 0.065 0.935 53 H 0.038 0.962 54 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.981 24.672 7.196 34.476 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.150 4.150 3 C -0.161 4.161 4 C 0.278 3.722 5 O -0.434 6.434 6 N -0.341 5.341 7 C -0.018 4.018 8 C -0.174 4.174 9 C -0.149 4.149 10 C -0.160 4.160 11 C 0.027 3.973 12 H 0.136 0.864 13 C 0.311 3.689 14 O -0.469 6.469 15 N -0.366 5.366 16 C -0.003 4.003 17 C 0.022 3.978 18 N -0.332 5.332 19 C -0.393 4.393 20 H 0.066 0.934 21 C -0.189 4.189 22 N -0.568 5.568 23 Si 0.730 3.270 24 H -0.235 1.235 25 H -0.217 1.217 26 H -0.175 1.175 27 C 0.010 3.990 28 C -0.209 4.209 29 H 0.093 0.907 30 H 0.084 0.916 31 H 0.071 0.929 32 H 0.052 0.948 33 H 0.067 0.933 34 H 0.146 0.854 35 H 0.130 0.870 36 H 0.116 0.884 37 H 0.129 0.871 38 H 0.128 0.872 39 H 0.070 0.930 40 H 0.108 0.892 41 H 0.097 0.903 42 H 0.097 0.903 43 H 0.063 0.937 44 H 0.247 0.753 45 H 0.041 0.959 46 H 0.042 0.958 47 H 0.093 0.907 48 H 0.083 0.917 49 H 0.074 0.926 50 H 0.061 0.939 51 H 0.050 0.950 52 H 0.084 0.916 53 H 0.058 0.942 54 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -22.794 23.559 6.411 33.402 hybrid contribution 0.211 -0.929 -1.159 1.500 sum -22.584 22.630 5.252 32.399 Atomic orbital electron populations 1.21728 0.92893 1.02279 1.03110 1.21258 0.97294 0.95387 1.01087 1.21728 0.88331 0.99577 1.06486 1.21754 0.92349 0.82992 0.75144 1.90805 1.69605 1.32911 1.50045 1.48259 1.04834 1.07697 1.73360 1.22190 0.97988 0.81392 1.00198 1.21968 0.96012 1.01174 0.98197 1.21520 0.95502 0.93867 1.03964 1.21839 1.01763 0.96350 0.96074 1.21196 0.82688 0.91554 1.01875 0.86362 1.20685 0.76948 0.88125 0.83100 1.90644 1.58409 1.67762 1.30088 1.45683 1.51285 1.16468 1.23150 1.21688 0.96070 0.82553 1.00023 1.21147 0.95893 0.86484 0.94316 1.44186 1.22816 1.00949 1.65273 1.18575 0.87913 1.19698 1.13140 0.93379 1.25975 0.97074 0.97992 0.97899 1.70047 1.27319 1.25992 1.33422 0.86559 0.84165 0.75965 0.80274 1.23467 1.21718 1.17543 1.21230 0.93525 0.89295 0.94903 1.22098 1.00981 1.01129 0.96725 0.90661 0.91572 0.92906 0.94836 0.93280 0.85351 0.86997 0.88357 0.87077 0.87224 0.92967 0.89233 0.90331 0.90257 0.93728 0.75321 0.95893 0.95846 0.90736 0.91678 0.92604 0.93918 0.94964 0.91629 0.94246 0.92055 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.93 9.91 71.98 0.71 -1.21 16 2 C -0.11 -2.35 5.22 30.59 0.16 -2.19 16 3 C -0.12 -1.95 4.06 29.85 0.12 -1.83 16 4 C 0.49 12.68 7.43 87.66 0.65 13.33 16 5 O -0.56 -21.54 11.82 20.33 0.24 -21.30 16 6 N -0.61 -11.69 2.98 -799.10 -2.38 -14.08 16 7 C 0.10 0.80 6.34 86.36 0.55 1.35 16 8 C -0.14 -1.01 6.08 30.67 0.19 -0.82 16 9 C -0.11 -1.11 5.88 30.62 0.18 -0.93 16 10 C -0.12 -2.38 5.31 30.67 0.16 -2.22 16 11 C 0.13 3.00 3.31 44.23 0.15 3.15 16 12 H 0.12 1.83 7.93 -2.39 -0.02 1.81 16 13 C 0.52 18.72 4.27 87.66 0.37 19.10 16 14 O -0.59 -28.12 14.75 20.32 0.30 -27.82 16 15 N -0.71 -24.34 5.56 -463.05 -2.57 -26.92 16 16 C 0.12 5.41 6.00 86.38 0.52 5.93 16 17 C 0.15 5.94 5.80 86.38 0.50 6.44 16 18 N -0.61 -29.87 1.93 -702.00 -1.36 -31.23 16 19 C -0.26 -15.33 9.76 84.03 0.82 -14.51 16 20 H 0.05 3.02 8.06 -2.91 -0.02 3.00 16 21 C 0.01 0.60 5.05 84.86 0.43 1.03 16 22 N -0.93 -59.01 13.97 21.65 0.30 -58.71 16 23 Si 0.90 49.82 26.60 68.60 1.82 51.64 16 24 H -0.31 -17.83 7.11 99.48 0.71 -17.12 16 25 H -0.29 -15.64 7.11 99.48 0.71 -14.93 16 26 H -0.25 -13.34 5.64 99.48 0.56 -12.78 16 27 C 0.14 6.11 4.56 86.38 0.39 6.51 16 28 C -0.15 -5.60 10.24 71.98 0.74 -4.86 16 29 H 0.07 0.71 8.14 -2.38 -0.02 0.69 16 30 H 0.07 0.74 8.14 -2.39 -0.02 0.72 16 31 H 0.05 0.77 8.14 -2.39 -0.02 0.75 16 32 H 0.03 0.93 8.10 -2.39 -0.02 0.91 16 33 H 0.05 1.20 8.10 -2.38 -0.02 1.18 16 34 H 0.13 1.07 7.72 -2.38 -0.02 1.05 16 35 H 0.11 1.34 7.92 -2.39 -0.02 1.32 16 36 H 0.10 0.33 8.14 -2.38 -0.02 0.31 16 37 H 0.11 0.39 5.94 -2.39 -0.01 0.37 16 38 H 0.11 0.19 8.14 -2.39 -0.02 0.17 16 39 H 0.05 0.60 8.14 -2.39 -0.02 0.58 16 40 H 0.09 0.55 8.14 -2.39 -0.02 0.53 16 41 H 0.08 0.70 8.14 -2.38 -0.02 0.68 16 42 H 0.08 1.51 8.14 -2.39 -0.02 1.49 16 43 H 0.04 1.19 7.89 -2.39 -0.02 1.17 16 44 H 0.41 10.27 8.32 -92.71 -0.77 9.50 16 45 H 0.02 1.17 8.14 -2.39 -0.02 1.15 16 46 H 0.02 1.17 8.14 -2.39 -0.02 1.15 16 47 H 0.07 2.54 8.07 -2.39 -0.02 2.52 16 48 H 0.06 2.50 8.04 -2.39 -0.02 2.48 16 49 H 0.26 16.06 8.31 -92.70 -0.77 15.29 16 50 H 0.04 1.84 8.09 -2.39 -0.02 1.82 16 51 H 0.03 1.59 4.97 -2.38 -0.01 1.58 16 52 H 0.06 2.09 8.14 -2.39 -0.02 2.07 16 53 H 0.04 1.62 8.14 -2.39 -0.02 1.60 16 54 H 0.06 2.00 8.14 -2.39 -0.02 1.98 16 Total: -1.00 -90.07 418.14 2.94 -87.13 By element: Atomic # 1 Polarization: 13.09 SS G_CDS: -0.06 Total: 13.03 kcal Atomic # 6 Polarization: 21.61 SS G_CDS: 6.64 Total: 28.25 kcal Atomic # 7 Polarization: -124.92 SS G_CDS: -6.01 Total: -130.93 kcal Atomic # 8 Polarization: -49.66 SS G_CDS: 0.54 Total: -49.12 kcal Atomic # 14 Polarization: 49.82 SS G_CDS: 1.82 Total: 51.64 kcal Total: -90.07 2.94 -87.13 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001567354342.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.575 kcal (2) G-P(sol) polarization free energy of solvation -90.068 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -86.492 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.937 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -87.130 kcal (6) G-S(sol) free energy of system = (1) + (5) -83.555 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.42 seconds