Wall clock time and date at job start Sat Apr 11 2020 05:50:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53009 * 109.46913 * 2 1 4 4 H 1.08996 * 109.46394 * 55.00290 * 3 2 1 5 5 C 1.52991 * 109.47027 * 295.00406 * 3 2 1 6 6 C 1.52996 * 109.47014 * 175.00076 * 3 2 1 7 7 C 1.52997 * 109.47039 * 185.00345 * 6 3 2 8 8 C 1.50703 * 109.47158 * 180.02562 * 7 6 3 9 9 O 1.21280 * 120.00050 * 0.02562 * 8 7 6 10 10 N 1.34772 * 119.99881 * 179.97438 * 8 7 6 11 11 C 1.46508 * 119.99789 * 179.97438 * 10 8 7 12 12 C 1.52997 * 109.47065 * 180.02562 * 11 10 8 13 13 H 1.09007 * 110.27207 * 307.08938 * 12 11 10 14 14 C 1.54597 * 110.31107 * 69.28110 * 12 11 10 15 15 C 1.54936 * 102.91999 * 140.87425 * 14 12 11 16 16 N 1.48542 * 103.23034 * 322.58734 * 15 14 12 17 17 C 1.46893 * 111.00222 * 159.72082 * 16 15 14 18 18 C 1.50708 * 109.47146 * 52.60642 * 17 16 15 19 19 O 1.21288 * 119.99815 * 359.97438 * 18 17 16 20 20 N 1.34774 * 119.99719 * 180.02562 * 18 17 16 21 21 C 1.37101 * 119.99349 * 180.02562 * 20 18 17 22 22 H 1.07991 * 120.00515 * 359.97438 * 21 20 18 23 23 C 1.38955 * 119.99490 * 179.97438 * 21 20 18 24 24 N 1.31413 * 120.00236 * 359.97438 * 23 21 20 25 25 Si 1.86803 * 119.99845 * 179.97438 * 23 21 20 26 26 H 1.48498 * 109.47174 * 270.00316 * 25 23 21 27 27 H 1.48501 * 109.47062 * 30.00267 * 25 23 21 28 28 H 1.48504 * 109.46913 * 150.00066 * 25 23 21 29 29 C 1.47906 * 105.81487 * 39.20545 * 16 15 14 30 30 H 1.09002 * 109.47118 * 59.99683 * 1 2 3 31 31 H 1.09000 * 109.46694 * 180.02562 * 1 2 3 32 32 H 1.08994 * 109.46836 * 299.99178 * 1 2 3 33 33 H 1.09006 * 109.47045 * 240.00510 * 2 1 3 34 34 H 1.08996 * 109.47803 * 120.00385 * 2 1 3 35 35 H 1.09009 * 109.46968 * 180.02562 * 5 3 2 36 36 H 1.08996 * 109.47438 * 299.99802 * 5 3 2 37 37 H 1.09002 * 109.47707 * 60.00320 * 5 3 2 38 38 H 1.09008 * 109.47087 * 65.00287 * 6 3 2 39 39 H 1.08998 * 109.47626 * 305.00528 * 6 3 2 40 40 H 1.08995 * 109.47049 * 60.00357 * 7 6 3 41 41 H 1.09004 * 109.47288 * 299.99862 * 7 6 3 42 42 H 0.96999 * 120.00709 * 0.02562 * 10 8 7 43 43 H 1.08995 * 109.46996 * 60.00602 * 11 10 8 44 44 H 1.09004 * 109.47311 * 300.00130 * 11 10 8 45 45 H 1.08998 * 110.72504 * 259.23418 * 14 12 11 46 46 H 1.09003 * 110.72153 * 22.51904 * 14 12 11 47 47 H 1.09001 * 110.66896 * 204.15732 * 15 14 12 48 48 H 1.08998 * 110.66946 * 81.02629 * 15 14 12 49 49 H 1.09002 * 109.47091 * 292.60813 * 17 16 15 50 50 H 1.09000 * 109.47343 * 172.60431 * 17 16 15 51 51 H 0.96996 * 120.00564 * 359.97438 * 20 18 17 52 52 H 0.97001 * 119.99781 * 179.97438 * 24 23 21 53 53 H 1.09000 * 109.91096 * 94.02703 * 29 16 15 54 54 H 1.09001 * 109.91375 * 215.11607 * 29 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 1.6053 1.9815 0.8418 5 6 1.6351 2.1266 -1.3072 6 6 3.5648 1.4445 0.1257 7 6 4.0644 2.8851 0.2512 8 6 5.5664 2.8870 0.3744 9 8 6.1771 1.8393 0.3625 10 7 6.2310 4.0531 0.4967 11 6 7.6911 4.0548 0.6171 12 6 8.1907 5.4955 0.7424 13 1 7.8002 6.1031 -0.0740 14 6 7.7719 6.0920 2.1058 15 6 9.0151 6.9194 2.5185 16 7 10.1504 6.0842 2.0495 17 6 11.3727 6.8870 1.9112 18 6 11.6326 7.6317 3.1954 19 8 10.8739 7.5063 4.1333 20 7 12.7076 8.4377 3.3011 21 6 12.9443 9.1148 4.4696 22 1 12.2692 9.0025 5.3050 23 6 14.0528 9.9454 4.5789 24 7 14.8746 10.0816 3.5624 25 14 14.3750 10.8685 6.1706 26 1 13.6997 12.1901 6.1218 27 1 13.8446 10.0834 7.3141 28 1 15.8370 11.0655 6.3413 29 6 9.7302 5.5290 0.7446 30 1 -0.3633 0.5139 -0.8900 31 1 -0.3633 -1.0277 0.0005 32 1 -0.3633 0.5137 0.8900 33 1 1.8934 -0.5138 -0.8901 34 1 1.8935 -0.5139 0.8899 35 1 1.9989 3.1542 -1.3074 36 1 2.0697 1.5877 -2.1491 37 1 0.5488 2.1253 -1.3968 38 1 4.0029 0.9837 -0.7598 39 1 3.8571 0.8801 1.0112 40 1 3.6263 3.3457 1.1366 41 1 3.7721 3.4495 -0.6344 42 1 5.7426 4.8911 0.5059 43 1 8.1291 3.5938 -0.2681 44 1 7.9834 3.4909 1.5029 45 1 6.8997 6.7361 1.9935 46 1 7.5776 5.3006 2.8297 47 1 9.0515 7.0454 3.6006 48 1 9.0167 7.8873 2.0173 49 1 11.2486 7.6003 1.0963 50 1 12.2158 6.2309 1.6947 51 1 13.3141 8.5383 2.5509 52 1 15.6482 10.6618 3.6386 53 1 10.0890 6.1670 -0.0631 54 1 10.1268 4.5207 0.6251 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001567413440.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:50:54 Heat of formation + Delta-G solvation = -120.813040 kcal Electronic energy + Delta-G solvation = -28765.809505 eV Core-core repulsion = 24735.327062 eV Total energy + Delta-G solvation = -4030.482443 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 339.231 amu Computer time = 1.16 seconds Orbital eigenvalues (eV) -41.05158 -40.55200 -39.21536 -37.99523 -36.22961 -35.73627 -33.53652 -33.28840 -32.77009 -30.49797 -29.60878 -28.59895 -27.08547 -26.21039 -25.17571 -23.28671 -22.47089 -21.51226 -21.05633 -20.82207 -20.69562 -19.87134 -17.99999 -17.86093 -17.30247 -16.91582 -16.62975 -16.48738 -16.20989 -15.89989 -15.79920 -15.63685 -15.32397 -14.86031 -14.73104 -14.51083 -14.28907 -14.12813 -14.06094 -13.55354 -13.49399 -13.37673 -13.18408 -12.92753 -12.83158 -12.77388 -12.61270 -12.46791 -12.42218 -12.35624 -12.15261 -12.13243 -11.83980 -11.82341 -11.57235 -11.44894 -11.44697 -11.37421 -11.27819 -10.80910 -10.17696 -10.04434 -10.00088 -9.28504 -8.47418 -5.96092 1.37218 1.41359 1.54042 1.70672 2.03275 2.24228 2.29316 2.89527 3.19682 3.34898 3.59549 3.72627 3.80591 3.84510 3.89981 3.99005 4.19081 4.28206 4.32843 4.35119 4.40627 4.43481 4.47269 4.50344 4.58941 4.61629 4.67963 4.70512 4.74344 4.78165 4.84069 4.90589 4.93428 4.95483 5.10909 5.12040 5.14416 5.20932 5.25681 5.27341 5.28376 5.32371 5.35961 5.41338 5.49989 5.60265 5.60993 5.88357 6.00552 6.14499 6.59945 6.61831 7.12199 7.32689 7.54668 8.10643 8.70041 Molecular weight = 339.23amu Principal moments of inertia in cm(-1) A = 0.037409 B = 0.001405 C = 0.001382 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 748.293579 B =19930.792028 C =20257.941288 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.123 4.123 3 C -0.087 4.087 4 H 0.079 0.921 5 C -0.151 4.151 6 C -0.097 4.097 7 C -0.133 4.133 8 C 0.504 3.496 9 O -0.593 6.593 10 N -0.718 5.718 11 C 0.137 3.863 12 C -0.093 4.093 13 H 0.108 0.892 14 C -0.110 4.110 15 C 0.037 3.963 16 N -0.518 5.518 17 C 0.048 3.952 18 C 0.438 3.562 19 O -0.614 6.614 20 N -0.572 5.572 21 C -0.334 4.334 22 H 0.079 0.921 23 C -0.011 4.011 24 N -0.920 5.920 25 Si 0.992 3.008 26 H -0.270 1.270 27 H -0.274 1.274 28 H -0.271 1.271 29 C 0.038 3.962 30 H 0.061 0.939 31 H 0.052 0.948 32 H 0.056 0.944 33 H 0.056 0.944 34 H 0.054 0.946 35 H 0.066 0.934 36 H 0.048 0.952 37 H 0.062 0.938 38 H 0.052 0.948 39 H 0.049 0.951 40 H 0.114 0.886 41 H 0.119 0.881 42 H 0.416 0.584 43 H 0.065 0.935 44 H 0.049 0.951 45 H 0.096 0.904 46 H 0.064 0.936 47 H 0.073 0.927 48 H 0.031 0.969 49 H 0.071 0.929 50 H 0.106 0.894 51 H 0.396 0.604 52 H 0.278 0.722 53 H 0.063 0.937 54 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.823 -11.981 -13.857 31.660 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.161 4.161 3 C -0.106 4.106 4 H 0.097 0.903 5 C -0.208 4.208 6 C -0.135 4.135 7 C -0.173 4.173 8 C 0.292 3.708 9 O -0.473 6.473 10 N -0.370 5.370 11 C 0.013 3.987 12 C -0.112 4.112 13 H 0.126 0.874 14 C -0.148 4.148 15 C -0.091 4.091 16 N -0.243 5.243 17 C -0.083 4.083 18 C 0.225 3.775 19 O -0.500 6.500 20 N -0.209 5.209 21 C -0.463 4.463 22 H 0.097 0.903 23 C -0.211 4.211 24 N -0.561 5.561 25 Si 0.816 3.184 26 H -0.195 1.195 27 H -0.199 1.199 28 H -0.196 1.196 29 C -0.090 4.090 30 H 0.080 0.920 31 H 0.071 0.929 32 H 0.075 0.925 33 H 0.075 0.925 34 H 0.073 0.927 35 H 0.085 0.915 36 H 0.067 0.933 37 H 0.081 0.919 38 H 0.071 0.929 39 H 0.068 0.932 40 H 0.133 0.867 41 H 0.137 0.863 42 H 0.253 0.747 43 H 0.083 0.917 44 H 0.067 0.933 45 H 0.114 0.886 46 H 0.083 0.917 47 H 0.092 0.908 48 H 0.049 0.951 49 H 0.088 0.912 50 H 0.124 0.876 51 H 0.229 0.771 52 H 0.087 0.913 53 H 0.081 0.919 54 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges -25.564 -13.096 -12.903 31.488 hybrid contribution 0.894 1.434 0.018 1.690 sum -24.670 -11.661 -12.885 30.177 Atomic orbital electron populations 1.21808 0.95131 1.01731 1.02217 1.21588 0.96481 0.96461 1.01570 1.21155 0.93732 0.96382 0.99320 0.90302 1.21954 1.01737 1.00785 0.96333 1.21341 0.95410 0.95037 1.01730 1.21781 0.88988 1.00123 1.06395 1.21440 0.91705 0.82957 0.74660 1.90698 1.71323 1.33298 1.52010 1.45956 1.07540 1.09448 1.74079 1.21266 0.80296 0.96013 1.01167 1.22149 0.94679 0.95514 0.98907 0.87394 1.22598 0.97032 0.99199 0.95960 1.23299 0.89952 0.94091 1.01751 1.64568 1.02585 1.32134 1.25033 1.21985 0.95837 0.96481 0.94037 1.20737 0.82778 0.82971 0.90967 1.90436 1.48836 1.68278 1.42473 1.41919 1.23678 1.40289 1.15022 1.19670 1.09811 1.23602 0.93242 0.90264 1.26026 0.94980 0.98097 1.02015 1.69674 1.15030 1.39232 1.32197 0.84937 0.77742 0.78285 0.77432 1.19517 1.19851 1.19583 1.22989 0.94809 1.01283 0.89882 0.91987 0.92873 0.92522 0.92527 0.92708 0.91473 0.93260 0.91875 0.92903 0.93189 0.86738 0.86290 0.74685 0.91676 0.93290 0.88563 0.91689 0.90824 0.95085 0.91151 0.87626 0.77051 0.91294 0.91920 0.89736 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.31 9.67 71.98 0.70 -0.61 16 2 C -0.12 -1.33 5.40 30.60 0.17 -1.17 16 3 C -0.09 -0.84 2.39 -10.80 -0.03 -0.87 16 4 H 0.08 0.66 8.14 -2.39 -0.02 0.64 16 5 C -0.15 -1.14 8.70 71.98 0.63 -0.52 16 6 C -0.10 -1.34 3.97 30.59 0.12 -1.22 16 7 C -0.13 -1.41 5.45 29.85 0.16 -1.25 16 8 C 0.50 9.45 7.83 87.66 0.69 10.13 16 9 O -0.59 -17.20 15.98 -3.03 -0.05 -17.25 16 10 N -0.72 -10.58 5.43 -463.05 -2.51 -13.10 16 11 C 0.14 2.58 4.77 86.38 0.41 2.99 16 12 C -0.09 -1.65 3.03 -9.92 -0.03 -1.68 16 13 H 0.11 1.37 8.14 -2.38 -0.02 1.35 16 14 C -0.11 -2.38 6.41 31.80 0.20 -2.17 16 15 C 0.04 1.18 5.30 86.65 0.46 1.64 16 16 N -0.52 -16.87 5.26 -887.54 -4.67 -21.53 16 17 C 0.05 1.69 5.52 85.56 0.47 2.16 16 18 C 0.44 20.92 7.49 87.66 0.66 21.57 16 19 O -0.61 -33.52 13.09 -3.05 -0.04 -33.56 16 20 N -0.57 -29.44 5.29 -306.98 -1.62 -31.06 16 21 C -0.33 -18.96 9.68 84.04 0.81 -18.15 16 22 H 0.08 4.79 7.16 -2.92 -0.02 4.77 16 23 C -0.01 -0.61 5.50 84.93 0.47 -0.14 16 24 N -0.92 -49.66 13.05 21.66 0.28 -49.37 16 25 Si 0.99 42.87 29.55 68.60 2.03 44.90 16 26 H -0.27 -11.25 7.11 99.48 0.71 -10.54 16 27 H -0.27 -11.92 7.11 99.48 0.71 -11.22 16 28 H -0.27 -11.11 7.11 99.48 0.71 -10.40 16 29 C 0.04 0.87 6.35 86.44 0.55 1.42 16 30 H 0.06 0.47 6.56 -2.39 -0.02 0.45 16 31 H 0.05 0.45 8.14 -2.39 -0.02 0.43 16 32 H 0.06 0.46 8.14 -2.39 -0.02 0.44 16 33 H 0.06 0.66 8.14 -2.38 -0.02 0.64 16 34 H 0.05 0.66 8.14 -2.39 -0.02 0.64 16 35 H 0.07 0.36 6.56 -2.38 -0.02 0.34 16 36 H 0.05 0.44 8.14 -2.39 -0.02 0.42 16 37 H 0.06 0.41 6.57 -2.39 -0.02 0.40 16 38 H 0.05 0.90 8.10 -2.38 -0.02 0.88 16 39 H 0.05 0.88 8.10 -2.39 -0.02 0.86 16 40 H 0.11 0.76 8.14 -2.39 -0.02 0.74 16 41 H 0.12 0.69 6.56 -2.38 -0.02 0.68 16 42 H 0.42 3.41 8.41 -92.71 -0.78 2.63 16 43 H 0.06 1.28 8.14 -2.39 -0.02 1.26 16 44 H 0.05 1.20 7.99 -2.38 -0.02 1.18 16 45 H 0.10 1.53 8.14 -2.39 -0.02 1.51 16 46 H 0.06 1.57 7.76 -2.39 -0.02 1.55 16 47 H 0.07 3.06 5.97 -2.39 -0.01 3.04 16 48 H 0.03 1.00 8.02 -2.39 -0.02 0.99 16 49 H 0.07 2.17 7.81 -2.39 -0.02 2.15 16 50 H 0.11 3.38 8.14 -2.39 -0.02 3.36 16 51 H 0.40 19.39 7.90 -92.71 -0.73 18.65 16 52 H 0.28 14.01 8.31 -92.71 -0.77 13.24 16 53 H 0.06 1.25 7.57 -2.39 -0.02 1.23 16 54 H 0.08 1.87 7.69 -2.39 -0.02 1.85 16 Total: -1.00 -73.88 423.05 -0.77 -74.65 By element: Atomic # 1 Polarization: 34.79 SS G_CDS: -0.62 Total: 34.17 kcal Atomic # 6 Polarization: 5.72 SS G_CDS: 6.44 Total: 12.16 kcal Atomic # 7 Polarization: -106.55 SS G_CDS: -8.52 Total: -115.07 kcal Atomic # 8 Polarization: -50.72 SS G_CDS: -0.09 Total: -50.81 kcal Atomic # 14 Polarization: 42.87 SS G_CDS: 2.03 Total: 44.90 kcal Total: -73.88 -0.77 -74.65 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001567413440.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -46.164 kcal (2) G-P(sol) polarization free energy of solvation -73.878 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -120.042 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.771 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.649 kcal (6) G-S(sol) free energy of system = (1) + (5) -120.813 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.17 seconds