Wall clock time and date at job start Sat Apr 11 2020 05:51:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53001 * 109.47010 * 2 1 4 4 H 1.08997 * 109.89836 * 305.93273 * 3 2 1 5 5 C 1.54385 * 109.82821 * 184.99715 * 3 2 1 6 6 C 1.55298 * 102.25292 * 219.13162 * 5 3 2 7 7 C 1.54943 * 100.94515 * 34.13699 * 6 5 3 8 8 H 1.09000 * 110.31242 * 82.56569 * 7 6 5 9 9 C 1.50697 * 110.31405 * 204.64060 * 7 6 5 10 10 O 1.21286 * 120.00189 * 106.49042 * 9 7 6 11 11 N 1.34779 * 120.00046 * 286.48659 * 9 7 6 12 12 C 1.46500 * 119.99820 * 4.45223 * 11 9 7 13 13 C 1.46500 * 120.00302 * 184.44381 * 11 9 7 14 14 C 1.53003 * 109.47072 * 270.00787 * 13 11 9 15 15 N 1.46899 * 109.46870 * 180.02562 * 14 13 11 16 16 C 1.46894 * 111.00057 * 189.99279 * 15 14 13 17 17 C 1.53240 * 109.34285 * 187.25191 * 16 15 14 18 18 N 1.47079 * 108.52109 * 306.17189 * 17 16 15 19 19 C 1.36935 * 120.88634 * 231.18592 * 18 17 16 20 20 H 1.08001 * 119.99409 * 28.74863 * 19 18 17 21 21 C 1.38806 * 120.00312 * 208.75577 * 19 18 17 22 22 N 1.31616 * 120.00080 * 17.39947 * 21 19 18 23 23 Si 1.86806 * 120.00054 * 197.12634 * 21 19 18 24 24 H 1.48493 * 109.47030 * 265.28715 * 23 21 19 25 25 H 1.48498 * 109.47035 * 25.28497 * 23 21 19 26 26 H 1.48491 * 109.47135 * 145.28573 * 23 21 19 27 27 C 1.47079 * 118.23348 * 51.45816 * 18 17 16 28 28 C 1.46901 * 111.00025 * 314.29646 * 15 14 13 29 29 O 1.43243 * 109.82602 * 66.86792 * 3 2 1 30 30 H 1.09002 * 109.46982 * 59.99834 * 1 2 3 31 31 H 1.08995 * 109.47241 * 179.97438 * 1 2 3 32 32 H 1.09005 * 109.47255 * 299.99723 * 1 2 3 33 33 H 1.08999 * 109.46972 * 240.00605 * 2 1 3 34 34 H 1.08995 * 109.47347 * 120.00160 * 2 1 3 35 35 H 1.09002 * 110.84265 * 100.94318 * 5 3 2 36 36 H 1.08993 * 110.84674 * 337.32588 * 5 3 2 37 37 H 1.09006 * 111.12878 * 276.21580 * 6 5 3 38 38 H 1.09000 * 111.16195 * 152.07412 * 6 5 3 39 39 H 1.09005 * 109.46442 * 265.30176 * 12 11 9 40 40 H 1.09001 * 109.47139 * 25.29188 * 12 11 9 41 41 H 1.08997 * 109.47201 * 145.29849 * 12 11 9 42 42 H 1.08994 * 109.46963 * 150.00014 * 13 11 9 43 43 H 1.09000 * 109.46870 * 30.00071 * 13 11 9 44 44 H 1.08988 * 109.47446 * 59.99969 * 14 13 11 45 45 H 1.09000 * 109.46689 * 299.99395 * 14 13 11 46 46 H 1.09008 * 109.48807 * 67.29508 * 16 15 14 47 47 H 1.09002 * 109.51964 * 307.23227 * 16 15 14 48 48 H 1.08999 * 109.62793 * 186.46728 * 17 16 15 49 49 H 1.09001 * 109.78682 * 65.97797 * 17 16 15 50 50 H 0.97000 * 120.00301 * 179.72506 * 22 21 19 51 51 H 1.08997 * 109.62954 * 68.25324 * 27 18 17 52 52 H 1.09003 * 109.62646 * 188.83121 * 27 18 17 53 53 H 1.08998 * 109.49350 * 292.71017 * 28 15 14 54 54 H 1.09003 * 109.48742 * 52.79193 * 28 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.5966 1.9928 -0.8299 5 6 3.5786 1.4540 -0.1265 6 6 3.9798 2.6053 0.8354 7 6 2.8994 2.4588 1.9363 8 1 3.1873 1.6854 2.6484 9 6 2.6946 3.7722 2.6464 10 8 1.6926 4.4235 2.4396 11 7 3.6248 4.2229 3.5113 12 6 4.8786 3.4861 3.6882 13 6 3.3822 5.4498 4.2743 14 6 3.9026 6.6527 3.4849 15 7 3.6599 7.8827 4.2503 16 6 3.9265 9.0732 3.4321 17 6 3.8386 10.3243 4.3126 18 7 2.5387 10.3210 5.0006 19 6 1.7209 11.4187 4.9634 20 1 1.7534 12.0878 4.1163 21 6 0.8502 11.6715 6.0145 22 7 1.0344 11.0837 7.1775 23 14 -0.5786 12.8519 5.7804 24 1 -0.1821 14.2066 6.2415 25 1 -0.9454 12.9062 4.3425 26 1 -1.7441 12.3814 6.5712 27 6 2.1432 9.1096 5.7349 28 6 2.2951 7.9042 4.7935 29 8 1.7028 2.0770 1.2392 30 1 -0.3633 0.5139 -0.8900 31 1 -0.3633 -1.0276 -0.0005 32 1 -0.3634 0.5138 0.8900 33 1 1.8933 -0.5137 -0.8900 34 1 1.8934 -0.5138 0.8899 35 1 3.8820 1.6792 -1.1489 36 1 4.0021 0.5061 0.2051 37 1 3.9076 3.5739 0.3406 38 1 4.9788 2.4483 1.2420 39 1 4.7855 2.8094 4.5376 40 1 5.0923 2.9109 2.7873 41 1 5.6907 4.1896 3.8713 42 1 3.9009 5.3910 5.2311 43 1 2.3122 5.5643 4.4475 44 1 3.3838 6.7114 2.5282 45 1 4.9726 6.5381 3.3117 46 1 3.1879 9.1381 2.6330 47 1 4.9246 9.0019 2.9999 48 1 3.9216 11.2159 3.6911 49 1 4.6426 10.3148 5.0486 50 1 0.4283 11.2634 7.9132 51 1 2.7872 8.9821 6.6049 52 1 1.1047 9.1977 6.0543 53 1 1.5793 7.9854 3.9755 54 1 2.1104 6.9848 5.3492 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001567717216.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:51:01 Heat of formation + Delta-G solvation = -64.125955 kcal Electronic energy + Delta-G solvation = -30780.269295 eV Core-core repulsion = 26752.244988 eV Total energy + Delta-G solvation = -4028.024307 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 339.231 amu Computer time = 1.12 seconds Orbital eigenvalues (eV) -41.65147 -40.16438 -39.47513 -37.10263 -36.02714 -34.54731 -33.61021 -33.10705 -31.73629 -31.00716 -29.44782 -28.07924 -27.27224 -25.55738 -24.81418 -24.25629 -22.89036 -22.78428 -21.75619 -20.89938 -20.21928 -18.79625 -18.76977 -17.75973 -17.23460 -16.95479 -16.71218 -16.56889 -15.88771 -15.83295 -15.61027 -15.33086 -15.21766 -15.06873 -15.00546 -14.60541 -14.34881 -14.26189 -14.02012 -13.88995 -13.87545 -13.29925 -13.24466 -13.13447 -13.01459 -12.95247 -12.67683 -12.64847 -12.40643 -12.34839 -12.16547 -12.09911 -11.89920 -11.87212 -11.79488 -11.58744 -11.56623 -11.43659 -11.03733 -10.61764 -10.41152 -9.75321 -9.37969 -8.69534 -7.91317 -5.36805 1.42492 1.44579 1.44757 1.54765 1.70914 2.47751 2.83527 3.02596 3.24222 3.32635 3.51432 3.64204 3.72717 3.87612 3.96726 4.01095 4.08229 4.15227 4.21991 4.26133 4.29415 4.30958 4.43268 4.44470 4.49753 4.52438 4.56501 4.62865 4.68315 4.74575 4.77939 4.82199 4.83203 4.91738 4.93117 4.96728 4.98925 5.04583 5.06339 5.11713 5.15777 5.30591 5.31666 5.39853 5.43253 5.58664 5.61414 5.97138 6.06850 6.15363 6.33039 6.34993 7.08990 7.10066 7.80210 8.35748 9.15844 Molecular weight = 339.23amu Principal moments of inertia in cm(-1) A = 0.017515 B = 0.002222 C = 0.002084 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1598.290643 B =12596.324033 C =13434.564641 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.126 4.126 3 C 0.064 3.936 4 H 0.067 0.933 5 C -0.137 4.137 6 C -0.142 4.142 7 C 0.066 3.934 8 H 0.123 0.877 9 C 0.499 3.501 10 O -0.581 6.581 11 N -0.607 5.607 12 C 0.058 3.942 13 C 0.117 3.883 14 C 0.053 3.947 15 N -0.529 5.529 16 C 0.055 3.945 17 C 0.146 3.854 18 N -0.616 5.616 19 C -0.268 4.268 20 H 0.064 0.936 21 C -0.050 4.050 22 N -0.932 5.932 23 Si 0.967 3.033 24 H -0.280 1.280 25 H -0.274 1.274 26 H -0.291 1.291 27 C 0.190 3.810 28 C 0.048 3.952 29 O -0.386 6.386 30 H 0.050 0.950 31 H 0.066 0.934 32 H 0.035 0.965 33 H 0.097 0.903 34 H 0.073 0.927 35 H 0.101 0.899 36 H 0.108 0.892 37 H 0.065 0.935 38 H 0.132 0.868 39 H 0.077 0.923 40 H 0.100 0.900 41 H 0.090 0.910 42 H 0.108 0.892 43 H 0.055 0.945 44 H 0.007 0.993 45 H 0.100 0.900 46 H 0.012 0.988 47 H 0.100 0.900 48 H 0.060 0.940 49 H 0.024 0.976 50 H 0.251 0.749 51 H 0.009 0.991 52 H 0.049 0.951 53 H 0.002 0.998 54 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.988 -27.484 -14.235 33.566 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.163 4.163 3 C 0.006 3.994 4 H 0.085 0.915 5 C -0.175 4.175 6 C -0.180 4.180 7 C 0.006 3.994 8 H 0.140 0.860 9 C 0.288 3.712 10 O -0.460 6.460 11 N -0.341 5.341 12 C -0.083 4.083 13 C -0.006 4.006 14 C -0.075 4.075 15 N -0.254 5.254 16 C -0.074 4.074 17 C 0.020 3.980 18 N -0.340 5.340 19 C -0.398 4.398 20 H 0.082 0.918 21 C -0.245 4.245 22 N -0.578 5.578 23 Si 0.795 3.205 24 H -0.207 1.207 25 H -0.199 1.199 26 H -0.217 1.217 27 C 0.063 3.937 28 C -0.082 4.082 29 O -0.305 6.305 30 H 0.069 0.931 31 H 0.085 0.915 32 H 0.054 0.946 33 H 0.115 0.885 34 H 0.091 0.909 35 H 0.119 0.881 36 H 0.127 0.873 37 H 0.084 0.916 38 H 0.150 0.850 39 H 0.095 0.905 40 H 0.118 0.882 41 H 0.109 0.891 42 H 0.126 0.874 43 H 0.073 0.927 44 H 0.026 0.974 45 H 0.119 0.881 46 H 0.030 0.970 47 H 0.118 0.882 48 H 0.079 0.921 49 H 0.042 0.958 50 H 0.060 0.940 51 H 0.027 0.973 52 H 0.067 0.933 53 H 0.020 0.980 54 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges 12.499 -27.087 -13.748 32.847 hybrid contribution -1.820 1.170 -0.388 2.198 sum 10.679 -25.917 -14.136 31.394 Atomic orbital electron populations 1.21735 0.96489 1.01774 1.01108 1.21893 0.96034 0.94648 1.03725 1.23114 0.96580 0.94040 0.85621 0.91492 1.23206 0.92832 0.99738 1.01680 1.23393 0.99460 1.00200 0.94907 1.22999 0.87101 0.92874 0.96441 0.85987 1.21374 0.82512 0.87959 0.79378 1.90733 1.31094 1.59915 1.64244 1.47877 1.19484 1.25484 1.41240 1.22431 0.83853 0.97688 1.04323 1.21520 1.01183 0.82793 0.95117 1.22403 1.01764 0.89183 0.94198 1.62051 1.25062 1.02103 1.36169 1.22496 1.00517 0.90566 0.93847 1.21124 0.87154 0.95602 0.94096 1.44399 1.16990 1.11998 1.60597 1.19479 1.15927 1.03683 1.00733 0.91806 1.25837 1.03411 1.00973 0.94308 1.70176 1.38304 1.47848 1.01456 0.85271 0.79080 0.78630 0.77537 1.20689 1.19861 1.21681 1.20658 0.98238 0.83547 0.91209 1.22743 0.88401 0.99690 0.97353 1.88556 1.29175 1.78461 1.34297 0.93116 0.91537 0.94555 0.88508 0.90869 0.88057 0.87310 0.91610 0.85029 0.90480 0.88173 0.89114 0.87383 0.92691 0.97450 0.88140 0.97005 0.88158 0.92115 0.95753 0.93956 0.97286 0.93262 0.97967 0.89868 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.37 9.83 71.98 0.71 -1.66 16 2 C -0.13 -1.46 5.50 30.59 0.17 -1.30 16 3 C 0.06 0.98 3.51 31.07 0.11 1.09 16 4 H 0.07 1.18 8.14 -2.39 -0.02 1.16 16 5 C -0.14 -1.05 6.54 31.85 0.21 -0.84 16 6 C -0.14 -1.48 5.89 32.05 0.19 -1.29 16 7 C 0.07 1.20 2.94 30.51 0.09 1.29 16 8 H 0.12 1.45 7.83 -2.39 -0.02 1.43 16 9 C 0.50 13.47 7.03 87.66 0.62 14.08 16 10 O -0.58 -23.21 16.20 15.27 0.25 -22.97 16 11 N -0.61 -12.70 2.87 -846.75 -2.43 -15.14 16 12 C 0.06 0.52 10.09 127.77 1.29 1.81 16 13 C 0.12 3.11 4.65 86.38 0.40 3.52 16 14 C 0.05 1.55 5.59 86.30 0.48 2.03 16 15 N -0.53 -19.29 4.78 -894.32 -4.27 -23.56 16 16 C 0.06 2.04 5.58 86.38 0.48 2.52 16 17 C 0.15 6.44 6.69 86.35 0.58 7.02 16 18 N -0.62 -33.33 3.02 -697.25 -2.11 -35.44 16 19 C -0.27 -15.66 9.61 84.03 0.81 -14.86 16 20 H 0.06 3.64 7.89 -2.91 -0.02 3.61 16 21 C -0.05 -2.91 4.91 84.86 0.42 -2.49 16 22 N -0.93 -57.36 11.32 21.65 0.25 -57.12 16 23 Si 0.97 47.01 29.59 68.60 2.03 49.04 16 24 H -0.28 -13.22 7.11 99.48 0.71 -12.52 16 25 H -0.27 -12.91 7.11 99.48 0.71 -12.20 16 26 H -0.29 -14.08 7.11 99.48 0.71 -13.37 16 27 C 0.19 9.92 5.43 86.50 0.47 10.39 16 28 C 0.05 2.05 5.06 86.54 0.44 2.49 16 29 O -0.39 -9.39 9.92 -130.66 -1.30 -10.69 16 30 H 0.05 0.78 8.14 -2.39 -0.02 0.76 16 31 H 0.07 0.81 8.14 -2.39 -0.02 0.79 16 32 H 0.04 0.75 7.90 -2.38 -0.02 0.73 16 33 H 0.10 0.66 8.14 -2.39 -0.02 0.64 16 34 H 0.07 0.78 8.14 -2.39 -0.02 0.76 16 35 H 0.10 0.52 8.14 -2.39 -0.02 0.50 16 36 H 0.11 0.31 7.85 -2.39 -0.02 0.29 16 37 H 0.07 0.98 8.05 -2.38 -0.02 0.96 16 38 H 0.13 0.37 6.08 -2.39 -0.01 0.35 16 39 H 0.08 0.49 8.14 -2.38 -0.02 0.47 16 40 H 0.10 0.39 4.16 -2.39 -0.01 0.38 16 41 H 0.09 0.63 8.11 -2.39 -0.02 0.61 16 42 H 0.11 2.44 8.07 -2.39 -0.02 2.42 16 43 H 0.05 1.87 5.53 -2.39 -0.01 1.86 16 44 H 0.01 0.25 8.08 -2.39 -0.02 0.23 16 45 H 0.10 2.30 8.14 -2.39 -0.02 2.28 16 46 H 0.01 0.47 8.14 -2.38 -0.02 0.45 16 47 H 0.10 2.93 8.11 -2.39 -0.02 2.91 16 48 H 0.06 2.56 7.95 -2.39 -0.02 2.55 16 49 H 0.02 1.09 8.14 -2.39 -0.02 1.07 16 50 H 0.25 14.87 8.31 -92.71 -0.77 14.10 16 51 H 0.01 0.50 8.14 -2.39 -0.02 0.48 16 52 H 0.05 2.88 6.28 -2.39 -0.01 2.87 16 53 H 0.00 0.10 8.14 -2.39 -0.02 0.08 16 54 H 0.08 3.25 5.73 -2.39 -0.01 3.23 16 Total: -1.00 -82.91 411.49 0.72 -82.18 By element: Atomic # 1 Polarization: 9.03 SS G_CDS: 0.86 Total: 9.89 kcal Atomic # 6 Polarization: 16.35 SS G_CDS: 7.45 Total: 23.80 kcal Atomic # 7 Polarization: -122.69 SS G_CDS: -8.57 Total: -131.26 kcal Atomic # 8 Polarization: -32.61 SS G_CDS: -1.05 Total: -33.66 kcal Atomic # 14 Polarization: 47.01 SS G_CDS: 2.03 Total: 49.04 kcal Total: -82.91 0.72 -82.18 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001567717216.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.059 kcal (2) G-P(sol) polarization free energy of solvation -82.907 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.849 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.723 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.185 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.126 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.12 seconds