Wall clock time and date at job start Sat Apr 11 2020 05:51:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53000 * 109.47264 * 2 1 4 4 H 1.09006 * 110.32950 * 52.74863 * 3 2 1 5 5 C 1.54472 * 110.37272 * 174.99798 * 3 2 1 6 6 C 1.54508 * 104.06264 * 142.92251 * 5 3 2 7 7 C 1.54479 * 104.06246 * 359.97438 * 6 5 3 8 8 H 1.08996 * 110.37399 * 94.96606 * 7 6 5 9 9 C 1.50705 * 110.37026 * 217.18975 * 7 6 5 10 10 O 1.21282 * 119.99744 * 115.00108 * 9 7 6 11 11 N 1.34774 * 120.00150 * 295.27429 * 9 7 6 12 12 C 1.46498 * 119.99995 * 359.72865 * 11 9 7 13 13 C 1.46500 * 119.99839 * 179.72459 * 11 9 7 14 14 C 1.53003 * 109.46792 * 90.00190 * 13 11 9 15 15 N 1.46903 * 109.46798 * 179.97438 * 14 13 11 16 16 C 1.46897 * 111.00263 * 294.30172 * 15 14 13 17 17 C 1.53244 * 109.34048 * 172.74522 * 16 15 14 18 18 N 1.47083 * 108.51967 * 53.83031 * 17 16 15 19 19 C 1.36929 * 120.88047 * 128.79404 * 18 17 16 20 20 H 1.08003 * 120.00230 * 206.99120 * 19 18 17 21 21 C 1.38813 * 120.00068 * 26.99161 * 19 18 17 22 22 N 1.31618 * 120.00315 * 17.14595 * 21 19 18 23 23 Si 1.86805 * 119.99783 * 197.14918 * 21 19 18 24 24 H 1.48498 * 109.47149 * 94.12852 * 23 21 19 25 25 H 1.48506 * 109.46942 * 214.12288 * 23 21 19 26 26 H 1.48492 * 109.47482 * 334.12404 * 23 21 19 27 27 C 1.47084 * 118.23638 * 308.81526 * 18 17 16 28 28 C 1.46903 * 110.99825 * 170.00003 * 15 14 13 29 29 O 1.44419 * 104.80249 * 336.02183 * 7 6 5 30 30 H 1.09004 * 109.47140 * 60.00004 * 1 2 3 31 31 H 1.09003 * 109.47249 * 179.97438 * 1 2 3 32 32 H 1.09001 * 109.47280 * 299.99948 * 1 2 3 33 33 H 1.08994 * 109.47269 * 239.99625 * 2 1 3 34 34 H 1.08999 * 109.46902 * 119.99559 * 2 1 3 35 35 H 1.08996 * 110.51521 * 24.27797 * 5 3 2 36 36 H 1.09003 * 110.51237 * 261.56341 * 5 3 2 37 37 H 1.09001 * 110.50968 * 241.35158 * 6 5 3 38 38 H 1.09001 * 110.51516 * 118.64741 * 6 5 3 39 39 H 1.08998 * 109.47504 * 89.99977 * 12 11 9 40 40 H 1.09007 * 109.47187 * 210.00109 * 12 11 9 41 41 H 1.09000 * 109.47098 * 329.99567 * 12 11 9 42 42 H 1.08995 * 109.46860 * 209.99922 * 13 11 9 43 43 H 1.08997 * 109.47328 * 330.00345 * 13 11 9 44 44 H 1.08995 * 109.47199 * 299.99525 * 14 13 11 45 45 H 1.08997 * 109.47057 * 59.99989 * 14 13 11 46 46 H 1.08996 * 109.49408 * 292.71007 * 16 15 14 47 47 H 1.09006 * 109.49145 * 52.78648 * 16 15 14 48 48 H 1.08998 * 109.62871 * 294.12651 * 17 16 15 49 49 H 1.08992 * 109.78729 * 173.63771 * 17 16 15 50 50 H 0.96999 * 120.00021 * 180.02562 * 22 21 19 51 51 H 1.08989 * 109.62832 * 291.47389 * 27 18 17 52 52 H 1.09004 * 109.78455 * 170.99058 * 27 18 17 53 53 H 1.09003 * 109.49190 * 307.21684 * 28 15 14 54 54 H 1.08995 * 109.49543 * 67.26714 * 28 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.5829 2.0058 0.8136 5 6 3.5794 1.4686 0.1263 6 6 4.0105 2.6437 -0.7795 7 6 2.6806 3.1882 -1.3464 8 1 2.3224 4.0205 -0.7407 9 6 2.8592 3.6218 -2.7786 10 8 2.2710 3.0407 -3.6659 11 7 3.6769 4.6516 -3.0740 12 6 4.3875 5.3534 -2.0022 13 6 3.8552 5.0691 -4.4669 14 6 2.8112 6.1309 -4.8185 15 7 2.9904 6.5500 -6.2151 16 6 4.2750 7.2388 -6.3974 17 6 4.5049 7.4973 -7.8902 18 7 3.3354 8.2101 -8.4265 19 6 3.4858 9.3632 -9.1495 20 1 2.6930 10.0963 -9.1680 21 6 4.6574 9.5899 -9.8586 22 7 5.4720 8.5899 -10.1209 23 14 5.0779 11.3145 -10.4407 24 1 5.9529 11.9753 -9.4392 25 1 5.7867 11.2381 -11.7434 26 1 3.8287 12.1008 -10.6022 27 6 2.0000 7.6517 -8.1651 28 6 1.8688 7.3872 -6.6615 29 8 1.7633 2.0755 -1.2686 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3634 -1.0277 -0.0005 32 1 -0.3634 0.5138 0.8900 33 1 1.8933 -0.5139 -0.8899 34 1 1.8933 -0.5138 0.8900 35 1 4.0080 0.5328 -0.2324 36 1 3.8748 1.6541 1.1590 37 1 4.6522 2.2889 -1.5860 38 1 4.5191 3.4102 -0.1947 39 1 5.3517 4.8747 -1.8312 40 1 4.5440 6.3931 -2.2901 41 1 3.7954 5.3148 -1.0878 42 1 4.8543 5.4851 -4.5964 43 1 3.7324 4.2075 -5.1230 44 1 1.8121 5.7150 -4.6890 45 1 2.9340 6.9925 -4.1624 46 1 4.2578 8.1882 -5.8622 47 1 5.0802 6.6158 -6.0078 48 1 4.6258 6.5479 -8.4119 49 1 5.3987 8.1061 -8.0259 50 1 6.2908 8.7485 -10.6161 51 1 1.8803 6.7172 -8.7131 52 1 1.2351 8.3615 -8.4802 53 1 0.9289 6.8718 -6.4635 54 1 1.8847 8.3343 -6.1223 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001567717217.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:51:05 Heat of formation + Delta-G solvation = -68.133103 kcal Electronic energy + Delta-G solvation = -30498.446910 eV Core-core repulsion = 26470.248841 eV Total energy + Delta-G solvation = -4028.198070 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 339.231 amu Computer time = 1.32 seconds Orbital eigenvalues (eV) -41.58766 -40.06573 -39.46566 -37.08626 -36.00837 -34.59849 -33.56467 -33.01344 -31.67679 -31.07024 -29.39854 -28.06396 -27.23419 -25.54907 -24.71151 -24.24687 -22.97018 -22.51316 -21.93581 -20.86343 -20.32078 -18.76033 -18.27853 -17.67745 -17.49017 -17.12210 -16.79234 -16.17997 -16.10654 -15.86216 -15.45161 -15.32274 -15.07671 -14.96725 -14.84925 -14.65216 -14.50380 -14.22413 -14.16704 -13.94757 -13.85004 -13.28130 -13.21462 -13.04419 -12.95973 -12.84401 -12.64164 -12.62613 -12.45344 -12.35400 -12.13813 -12.03758 -11.89276 -11.85925 -11.72159 -11.58379 -11.49508 -11.40240 -10.99327 -10.60454 -10.60004 -9.79955 -9.28453 -8.69874 -7.88334 -5.33840 1.47054 1.47266 1.48436 1.57611 1.70530 2.50283 2.84971 3.08988 3.26751 3.35330 3.56121 3.65179 3.84199 3.88440 3.92551 4.06054 4.12362 4.18431 4.22107 4.30154 4.32385 4.33409 4.37661 4.42218 4.52063 4.57283 4.58610 4.66311 4.69463 4.73476 4.78174 4.85867 4.86488 4.91003 4.94847 4.96020 5.01881 5.04274 5.07337 5.15572 5.16545 5.21646 5.33636 5.41332 5.42077 5.60479 5.67168 5.85073 6.13804 6.20741 6.32433 6.36562 7.09616 7.12184 7.81775 8.37386 9.18746 Molecular weight = 339.23amu Principal moments of inertia in cm(-1) A = 0.030081 B = 0.001926 C = 0.001867 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 930.599150 B =14530.786903 C =14995.480919 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.118 4.118 3 C 0.062 3.938 4 H 0.088 0.912 5 C -0.145 4.145 6 C -0.138 4.138 7 C 0.060 3.940 8 H 0.120 0.880 9 C 0.507 3.493 10 O -0.575 6.575 11 N -0.607 5.607 12 C 0.064 3.936 13 C 0.126 3.874 14 C 0.056 3.944 15 N -0.546 5.546 16 C 0.052 3.948 17 C 0.184 3.816 18 N -0.614 5.614 19 C -0.265 4.265 20 H 0.067 0.933 21 C -0.052 4.052 22 N -0.936 5.936 23 Si 0.971 3.029 24 H -0.283 1.283 25 H -0.295 1.295 26 H -0.269 1.269 27 C 0.145 3.855 28 C 0.059 3.941 29 O -0.380 6.380 30 H 0.034 0.966 31 H 0.062 0.938 32 H 0.065 0.935 33 H 0.053 0.947 34 H 0.102 0.898 35 H 0.074 0.926 36 H 0.111 0.889 37 H 0.064 0.936 38 H 0.123 0.877 39 H 0.081 0.919 40 H 0.082 0.918 41 H 0.096 0.904 42 H 0.097 0.903 43 H 0.062 0.938 44 H 0.059 0.941 45 H 0.043 0.957 46 H 0.026 0.974 47 H 0.087 0.913 48 H -0.005 1.005 49 H 0.060 0.940 50 H 0.251 0.749 51 H 0.011 0.989 52 H 0.062 0.938 53 H 0.082 0.918 54 H 0.029 0.971 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.687 -11.964 30.219 32.545 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.155 4.155 3 C 0.005 3.995 4 H 0.106 0.894 5 C -0.182 4.182 6 C -0.176 4.176 7 C -0.001 4.001 8 H 0.137 0.863 9 C 0.296 3.704 10 O -0.454 6.454 11 N -0.341 5.341 12 C -0.077 4.077 13 C 0.002 3.998 14 C -0.073 4.073 15 N -0.271 5.271 16 C -0.077 4.077 17 C 0.058 3.942 18 N -0.338 5.338 19 C -0.395 4.395 20 H 0.085 0.915 21 C -0.247 4.247 22 N -0.582 5.582 23 Si 0.799 3.201 24 H -0.210 1.210 25 H -0.222 1.222 26 H -0.194 1.194 27 C 0.019 3.981 28 C -0.071 4.071 29 O -0.300 6.300 30 H 0.054 0.946 31 H 0.081 0.919 32 H 0.084 0.916 33 H 0.072 0.928 34 H 0.120 0.880 35 H 0.093 0.907 36 H 0.130 0.870 37 H 0.083 0.917 38 H 0.142 0.858 39 H 0.100 0.900 40 H 0.101 0.899 41 H 0.114 0.886 42 H 0.115 0.885 43 H 0.080 0.920 44 H 0.077 0.923 45 H 0.062 0.938 46 H 0.044 0.956 47 H 0.105 0.895 48 H 0.013 0.987 49 H 0.079 0.921 50 H 0.060 0.940 51 H 0.029 0.971 52 H 0.080 0.920 53 H 0.101 0.899 54 H 0.048 0.952 Dipole moment (debyes) X Y Z Total from point charges -2.020 -12.741 29.215 31.936 hybrid contribution 0.251 1.449 -0.693 1.626 sum -1.769 -11.291 28.521 30.726 Atomic orbital electron populations 1.21736 0.95636 1.01963 1.01569 1.21632 0.96533 0.94247 1.03118 1.23412 0.95664 0.94778 0.85657 0.89391 1.23030 0.94362 0.98861 1.01980 1.23006 0.94957 0.99767 0.99897 1.22976 0.92545 0.92515 0.92021 0.86260 1.21006 0.78378 0.79562 0.91465 1.90729 1.48236 1.55892 1.50522 1.47844 1.45569 1.32429 1.08256 1.22294 0.97803 0.97995 0.89609 1.21304 0.99197 0.97510 0.81746 1.22276 0.99558 0.97323 0.88154 1.61780 1.02805 1.42326 1.20204 1.22642 0.91246 0.95820 0.98004 1.20650 0.90523 0.93712 0.89338 1.44409 1.01454 1.26785 1.61115 1.19544 1.02569 0.94906 1.22461 0.91497 1.25837 0.99505 1.01019 0.98343 1.70203 1.13811 1.30882 1.43263 0.85193 0.78060 0.79911 0.76901 1.20971 1.22165 1.19372 1.21097 0.87653 0.95935 0.93445 1.22414 0.93530 0.94647 0.96479 1.89292 1.57740 1.43499 1.39428 0.94632 0.91937 0.91595 0.92791 0.87961 0.90702 0.87029 0.91682 0.85832 0.90031 0.89926 0.88570 0.88522 0.91982 0.92282 0.93846 0.95612 0.89467 0.98663 0.92121 0.93997 0.97108 0.91967 0.89945 0.95248 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.15 9.85 71.98 0.71 -1.44 16 2 C -0.12 -1.53 5.56 30.59 0.17 -1.36 16 3 C 0.06 0.83 3.24 31.09 0.10 0.93 16 4 H 0.09 0.85 8.14 -2.38 -0.02 0.84 16 5 C -0.14 -1.25 6.63 31.61 0.21 -1.04 16 6 C -0.14 -1.42 5.46 31.61 0.17 -1.24 16 7 C 0.06 1.05 2.79 30.35 0.08 1.13 16 8 H 0.12 1.37 7.29 -2.39 -0.02 1.35 16 9 C 0.51 13.18 7.00 87.66 0.61 13.79 16 10 O -0.58 -21.89 16.13 15.34 0.25 -21.64 16 11 N -0.61 -12.58 2.87 -846.76 -2.43 -15.01 16 12 C 0.06 0.63 9.06 127.77 1.16 1.79 16 13 C 0.13 3.32 5.34 86.38 0.46 3.78 16 14 C 0.06 1.64 5.29 86.30 0.46 2.09 16 15 N -0.55 -19.95 4.63 -895.24 -4.14 -24.09 16 16 C 0.05 1.99 5.46 86.39 0.47 2.46 16 17 C 0.18 9.22 5.42 86.35 0.47 9.68 16 18 N -0.61 -32.36 3.04 -698.13 -2.12 -34.48 16 19 C -0.26 -14.96 9.63 84.03 0.81 -14.15 16 20 H 0.07 3.68 7.89 -2.91 -0.02 3.65 16 21 C -0.05 -2.94 4.93 84.86 0.42 -2.52 16 22 N -0.94 -56.28 11.19 21.65 0.24 -56.04 16 23 Si 0.97 45.25 29.59 68.60 2.03 47.28 16 24 H -0.28 -12.84 7.11 99.48 0.71 -12.14 16 25 H -0.29 -13.82 7.11 99.48 0.71 -13.12 16 26 H -0.27 -11.97 7.11 99.48 0.71 -11.26 16 27 C 0.14 6.49 6.69 86.35 0.58 7.07 16 28 C 0.06 2.18 5.62 86.38 0.49 2.66 16 29 O -0.38 -8.86 10.40 -130.61 -1.36 -10.22 16 30 H 0.03 0.70 8.01 -2.39 -0.02 0.68 16 31 H 0.06 0.76 8.14 -2.39 -0.02 0.74 16 32 H 0.07 0.74 8.14 -2.39 -0.02 0.72 16 33 H 0.05 0.90 8.14 -2.39 -0.02 0.88 16 34 H 0.10 0.75 8.14 -2.39 -0.02 0.73 16 35 H 0.07 0.74 7.87 -2.39 -0.02 0.72 16 36 H 0.11 0.30 8.14 -2.39 -0.02 0.28 16 37 H 0.06 0.90 7.86 -2.39 -0.02 0.88 16 38 H 0.12 0.35 7.29 -2.39 -0.02 0.33 16 39 H 0.08 0.51 7.96 -2.39 -0.02 0.49 16 40 H 0.08 0.76 8.07 -2.38 -0.02 0.75 16 41 H 0.10 0.46 6.01 -2.39 -0.01 0.44 16 42 H 0.10 2.22 6.33 -2.39 -0.02 2.21 16 43 H 0.06 2.06 7.42 -2.39 -0.02 2.05 16 44 H 0.06 1.89 7.97 -2.39 -0.02 1.87 16 45 H 0.04 1.14 8.12 -2.39 -0.02 1.12 16 46 H 0.03 0.99 8.14 -2.39 -0.02 0.97 16 47 H 0.09 2.86 6.16 -2.38 -0.01 2.84 16 48 H 0.00 -0.26 8.14 -2.39 -0.02 -0.28 16 49 H 0.06 3.35 6.14 -2.39 -0.01 3.33 16 50 H 0.25 14.53 8.31 -92.71 -0.77 13.76 16 51 H 0.01 0.52 8.14 -2.39 -0.02 0.50 16 52 H 0.06 2.65 7.96 -2.39 -0.02 2.63 16 53 H 0.08 2.72 7.99 -2.39 -0.02 2.70 16 54 H 0.03 1.08 8.14 -2.39 -0.02 1.07 16 Total: -1.00 -79.52 413.20 0.68 -78.84 By element: Atomic # 1 Polarization: 10.89 SS G_CDS: 0.85 Total: 11.74 kcal Atomic # 6 Polarization: 16.27 SS G_CDS: 7.36 Total: 23.63 kcal Atomic # 7 Polarization: -121.17 SS G_CDS: -8.45 Total: -129.63 kcal Atomic # 8 Polarization: -30.75 SS G_CDS: -1.11 Total: -31.86 kcal Atomic # 14 Polarization: 45.25 SS G_CDS: 2.03 Total: 47.28 kcal Total: -79.52 0.68 -78.84 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001567717217.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.705 kcal (2) G-P(sol) polarization free energy of solvation -79.517 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.813 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.679 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.838 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.133 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.32 seconds